Nucleotide Excision Repair Driven by the Dissociation of CAK from TFIIH

Molecular Cell

Volumn 31, Issue 1, 2008, Pages 9-20

  Coin, Frédéric ^a   Oksenych, Valentyn ^a   Mocquet, Vincent ^a   Groh, Stefanie ^b,c   Blattner, Christine ^b   Egly, Jean Marc ^a  

^a INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^b KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

^c HZM Pharmaservice GmbH   (Germany)

Author keywords

DNA

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR 3; ADENOSINE TRIPHOSPHATE; CYCLIN DEPENDENT KINASE ACTIVATING KINASE; DNA; PROTEIN MDM2; PROTEIN P21; TRANSCRIPTION FACTOR IIH; XERODERMA PIGMENTOSUM GROUP A PROTEIN;

ANIMAL CELL; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; COMPLEX FORMATION; CONTROLLED STUDY; DISSOCIATION; DNA DAMAGE; DNA REPAIR; EUKARYOTE; EXCISION REPAIR; HUMAN; HUMAN CELL; NONHUMAN; PROTEIN PROTEIN INTERACTION; TRANSCRIPTION REGULATION; ULTRAVIOLET RADIATION;

ADENOSINE TRIPHOSPHATE; CELL CYCLE PROTEINS; CELL LINE; CYCLIN-DEPENDENT KINASES; DNA REPAIR; HUMANS; MODELS, BIOLOGICAL; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTOR TFIIH; ULTRAVIOLET RAYS; XERODERMA PIGMENTOSUM GROUP A PROTEIN;

EID: 46349091030     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2008.04.024     Document Type: Article

References (46)

1. Andressoo J.O., Jans J., de Wit J., Coin F., Hoogstraten D., van de Ven M., Toussaint W., Huijmans J., Thio H.B., van Leeuwen W.J., et al. Rescue of progeria in trichothiodystrophy by homozygous lethal Xpd alleles. PLoS Biol. 4 (2006) e322
2. Araujo S.J., Nigg E.A., and Wood R.D. Strong functional interactions of TFIIH with XPC and XPG in human DNA nucleotide excision repair, without a preassembled repairosome. Mol. Cell. Biol. 21 (2001) 2281-2291
3. Araujo S.J., Tirode F., Coin F., Pospiech H., Syvaoja J.E., Stucki M., Hubscher U., Egly J.M., and Wood R.D. Nucleotide excision repair of DNA with recombinant human proteins: definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK. Genes Dev. 14 (2000) 349-359
4. Coin F., Bergmann E., Tremeau-Bravard A., and Egly J.M. Mutations in XPB and XPD helicases found in xeroderma pigmentosum patients impair the transcription function of TFIIH. EMBO J. 18 (1999) 1357-1366
5. Coin F., De Santis L.P., Nardo T., Zlobinskaya O., Stefanini M., and Egly J.M. p8/TTD-A as a repair-specific TFIIH subunit. Mol. Cell 21 (2006) 215-226
6. Drapkin R., Reardon J.T., Ansari A., Huang J.C., Zawel L., Ahn K., Sancar A., and Reinberg D. Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II. Nature 368 (1994) 769-772
7. Dubaele S., Proietti De Santis L., Bienstock R.J., Keriel A., Stefanini M., Van Houten B., and Egly J.M. Basal transcription defect discriminates between xeroderma pigmentosum and trichothiodystrophy in XPD patients. Mol. Cell 11 (2003) 1635-1646
8. Evans E., Fellows J., Coffer A., and Wood R.D. Open complex formation around lesion during nucleotide excision repair provides a structure for cleavage by human XPG protein. EMBO J. 16 (1997) 625-638
9. Fan F., Jin S., Amundson S.A., Tong T., Fan W., Zhao H., Zhu X., Mazzacurati L., Li X., Petrik K.L., et al. ATF3 induction following DNA damage is regulated by distinct signaling pathways and over-expression of ATF3 protein suppresses cells growth. Oncogene 21 (2002) 7488-7496
10. Feaver W.J., Svejstrup J.Q., Bardwell L., Bardwell A.J., Buratowski S., Gulyas K.D., Donahue T.F., Friedberg E.C., and Kornberg R.D. Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair. Cell 75 (1993) 1379-1387
11. Fousteri M., Vermeulen W., van Zeeland A.A., and Mullenders L.H. Cockayne syndrome A and B proteins differentially regulate recruitment of chromatin remodeling and repair factors to stalled RNA polymerase II in vivo. Mol. Cell 23 (2006) 471-482
12. Gerard M., Fischer L., Moncollin V., Chipoulet J.M., Chambon P., and Egly J.M. Purification and interaction properties of the human RNA polymerase B(II) general transcription factor BTF2. J. Biol. Chem. 266 (1991) 20940-20945
13. Giglia-Mari G., Coin F., Ranish J.A., Hoogstraten D., Theil A., Wijgers N., Jaspers N.G., Raams A., Argentini M., van der Spek P.J., et al. A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A. Nat. Genet. 36 (2004) 714-719
14. Giglia-Mari G., Miquel C., Theil A.F., Mari P.O., Hoogstraten D., Ng J.M., Dinant C., Hoeijmakers J.H., and Vermeulen W. Dynamic interaction of TTDA with TFIIH Is stabilized by nucleotide excision repair in living cells. PLoS Biol. 4 (2006) e156
15. Guzder S.N., Qiu H., Sommers C.H., Sung P., Prakash L., and Prakash S. DNA repair gene RAD3 of S. cerevisiae is essential for transcription by RNA polymerase II. Nature 367 (1994) 91-94
16. Guzder S.N., Sung P., Bailly V., Prakash L., and Prakash S. RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription. Nature 369 (1994) 578-581
17. Hanawalt P.C. Subpathways of nucleotide excision repair and their regulation. Oncogene 21 (2002) 8949-8956
18. Hoogstraten D., Nigg A.L., Heath H., Mullenders L.H., van Driel R., Hoeijmakers J.H., Vermeulen W., and Houtsmuller A.B. Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo. Mol. Cell 10 (2002) 1163-1174
19. Huang J.C., Svoboda D.L., Reardon J.T., and Sancar A. Human nucleotide excision nuclease removes thymine dimers from DNA by incising the 22nd phosphodiester bond 5′ and the 6th phosphodiester bond 3′ to the photodimer. Proc. Natl. Acad. Sci. USA 89 (1992) 3664-3668
20. Iben S., Tschochner H., Bier M., Hoogstraten D., Hozak P., Egly J.M., and Grummt I. TFIIH plays an essential role in RNA polymerase I transcription. Cell 109 (2002) 297-306
21. Kesseler K.J., Kaufmann W.K., Reardon J.T., Elston T.C., and Sancar A. A mathematical model for human nucleotide excision repair: Damage recognition by random order assembly and kinetic proofreading. J. Theor. Biol. 249 (2007) 361-375
22. Koberle B., Roginskaya V., and Wood R.D. XPA protein as a limiting factor for nucleotide excision repair and UV sensitivity in human cells. DNA Repair (Amst.) 5 (2006) 641-648
23. Lehmann A.R. DNA repair-deficient diseases, xeroderma pigmentosum, Cockayne syndrome and trichothiodystrophy. Biochimie 85 (2003) 1101-1111
24. Lindahl T., and Wood R.D. Quality control by DNA repair. Science 286 (1999) 1897-1905
25. Mayne L.V., and Lehmann A.R. Failure of RNA synthesis to recover after UV radiation: An early defect in cells from individuals with Cockayne's syndrome and xeroderma pigmentosum. Cancer Res. 42 (1982) 1473-1478
26. Moggs J.G., Yarema K.J., Essigmann J.M., and Wood R.D. Analysis of incision sites produced by human cell extracts and purified proteins during nucleotide excision repair of a 1,3-intrastrand d(GpTpG)-cisplatin adduct. J. Biol. Chem. 271 (1996) 7177-7186
27. Mori T., Nakane M., Hattori T., Matsunaga T., Ihara M., and Nikaido O. Simultaneous establishment of monoclonal antibodies specific for either cyclobutane pyrimidine dimer or (6-4)photoproduct from the same mouse immunized with ultraviolet-irradiated DNA. Photochem. Photobiol. 54 (1991) 225-232
28. Nocentini S., Coin F., Saijo M., Tanaka K., and Egly J.-M. DNA damage recognition by XPA protein promotes efficient recruitment of transcription factor II H. J. Biol. Sci. 272 (1997) 22991-22994
29. O'Donovan A., Davies A.A., Moggs J.G., West S.C., and Wood R.D. XPG endonuclease makes the 3′ incision in human DNA nucleotide excision repair. Nature 371 (1994) 432-435
30. Park C.H., Mu D., Reardon J.T., and Sancar A. The general transcription-repair factor TFIIH is recruited to the excision repair complex by the XPA protein independent of the TFIIE transcription factor. J. Biol. Chem. 270 (1995) 4896-4902
31. Proietti-De-Santis L., Drane P., and Egly J.M. Cockayne syndrome B protein regulates the transcriptional program after UV irradiation. EMBO J. 25 (2006) 1915-1923
32. Ranish J.A., Hahn S., Lu Y., Yi E., Li X., Eng J., and Aebersold R. Identification of TFB5, a new component of general transcription and DNA repair factor IIH. Nat. Genet. 36 (2004) 707-713
33. Riedl T., Hanaoka F., and Egly J.M. The comings and goings of nucleotide excision repair factors on damaged DNA. EMBO J. 22 (2003) 5293-5303
34. Riou L., Eveno E., van Hoffen A., van Zeeland A.A., Sarasin A., and Mullenders L.H. Differential repair of the two major UV-induced photolesions in trichothiodystrophy fibroblasts. Cancer Res. 64 (2004) 889-894
35. Roy R., Adamczewski J.P., Seroz T., Vermeulen W., Tassan J.P., Schaeffer L., Nigg E.A., Hoeijmakers J.H., and Egly J.M. The MO15 cell cycle kinase is associated with the TFIIH transcription-DNA repair factor. Cell 79 (1994) 1093-1101
36. Sandrock B., and Egly J.M. A yeast four-hybrid system identifies Cdk-activating kinase as a regulator of the XPD helicase, a subunit of transcription factor IIH. J. Biol. Chem. 276 (2001) 35328-35333
37. Schaeffer L., Roy R., Humbert S., Moncollin V., Vermeulen W., Hoeijmakers J.H., Chambon P., and Egly J.M. DNA repair helicase: A component of BTF2 (TFIIH) basic transcription factor. Science 260 (1993) 58-63
38. Shivji M.K.K., Podust V.N., Hubsher U., and Wood R.D. Nucleotide excision repair DNA synthesis by DNA polymerase epsilon in the presence of PCNA, RFC, and RPA. Biochemistry 34 (1995) 5011-5017
39. Sijbers A.M., de Laat W.L., Ariza R.R., Biggerstaff M., Wei Y.F., Moggs J.G., Carter K.C., Shell B.K., Evans E., de Jong M.C., et al. Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease. Cell 86 (1996) 811-822
40. Svejstrup J.Q., Wang Z., Feaver W.J., Wu X., Bushnell D.A., Donahue T.F., Friedberg E.C., and Kornberg R.D. Different forms of TFIIH for transcription and DNA repair: Holo-TFIIH and a nucleotide excision repairosome. Cell 80 (1995) 21-28
41. Tapias A., Auriol J., Forget D., Enzlin J.H., Scharer O.D., Coin F., Coulombe B., and Egly J.M. Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors. J. Biol. Chem. 279 (2004) 19074-19083
42. Tirode F., Busso D., Coin F., and Egly J.M. Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7. Mol. Cell 3 (1999) 87-95
43. van Hoffen A., Venema J., Meschini R., van Zeeland A.A., and Mullenders L.H. Transcription-coupled repair removes both cyclobutane pyrimidine dimers and 6-4 photoproducts with equal efficiency and in a sequential way from transcribed DNA in xeroderma pigmentosum group C fibroblasts. EMBO J. 14 (1995) 360-367
44. Volker M., Mone M.J., Karmakar P., van Hoffen A., Schul W., Vermeulen W., Hoeijmakers J.H., van Driel R., van Zeeland A.A., and Mullenders L.H. Sequential assembly of the nucleotide excision repair factors in vivo. Mol. Cell 8 (2001) 213-224
45. Winkler G.S., Sugasawa K., Eker A.P., de Laat W.L., and Hoeijmakers J.H. Novel functional interactions between nucleotide excision DNA repair proteins influencing the enzymatic activities of TFIIH, XPG, and ERCC1-XPF. Biochemistry 40 (2001) 160-165
46. Zurita M., and Merino C. The transcriptional complexity of the TFIIH complex. Trends Genet. 19 (2003) 578-584