DNA quality control by a lesion sensor pocket of the xeroderma pigmentosum group D helicase subunit of TFIIH

Current Biology

Volumn 23, Issue 3, 2013, Pages 204-212

  Mathieu, Nadine ^a   Kaczmarek, Nina ^a   Rüthemann, Peter ^a   Luch, Andreas ^b   Naegeli, Hanspeter ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b FEDERAL INSTITUTE FOR RISK ASSESSMENT   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; XERODERMA PIGMENTOSUM GROUP D PROTEIN;

ARTICLE; CELL LINE; CELL NUCLEUS; DNA DAMAGE; DNA REPAIR; HUMAN; METABOLISM; MUTATION;

CELL LINE, TRANSFORMED; CELL NUCLEUS; DNA; DNA DAMAGE; DNA REPAIR; HUMANS; MUTATION; XERODERMA PIGMENTOSUM GROUP D PROTEIN;

ARCHAEA;

EID: 84873408109     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2012.12.032     Document Type: Article

References (50)

1. J.J. Truglio, D.L. Croteau, B. Van Houten, and C. Kisker Prokaryotic nucleotide excision repair: the UvrABC system Chem. Rev. 106 2006 233 252
2. J.C. Huang, D.S. Hsu, A. Kazantsev, and A. Sancar Substrate spectrum of human excinuclease: repair of abasic sites, methylated bases, mismatches, and bulky adducts Proc. Natl. Acad. Sci. USA 91 1994 12213 12217
3. I. Kuraoka, C. Bender, A. Romieu, J. Cadet, R.D. Wood, and T. Lindahl Removal of oxygen free-radical-induced 5′,8-purine cyclodeoxynucleosides from DNA by the nucleotide excision-repair pathway in human cells Proc. Natl. Acad. Sci. USA 97 2000 3832 3837
4. L.C. Gillet, and O.D. Schärer Molecular mechanisms of mammalian global genome nucleotide excision repair Chem. Rev. 106 2006 253 276
5. K. Sugasawa, J.M. Ng, C. Masutani, S. Iwai, P.J. van der Spek, A.P. Eker, F. Hanaoka, D. Bootsma, and J.H. Hoeijmakers Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair Mol. Cell 2 1998 223 232
6. M. Volker, M.J. Moné, P. Karmakar, A. van Hoffen, W. Schul, W. Vermeulen, J.H. Hoeijmakers, R. van Driel, A.A. van Zeeland, and L.H. Mullenders Sequential assembly of the nucleotide excision repair factors in vivo Mol. Cell 8 2001 213 224
7. K. Sugasawa, T. Okamoto, Y. Shimizu, C. Masutani, S. Iwai, and F. Hanaoka A multistep damage recognition mechanism for global genomic nucleotide excision repair Genes Dev. 15 2001 507 521
8. J.H. Min, and N.P. Pavletich Recognition of DNA damage by the Rad4 nucleotide excision repair protein Nature 449 2007 570 575
9. J.Q. Svejstrup Mechanisms of transcription-coupled DNA repair Nat. Rev. Mol. Cell Biol. 3 2002 21 29
10. P.C. Hanawalt, and G. Spivak Transcription-coupled DNA repair: two decades of progress and surprises Nat. Rev. Mol. Cell Biol. 9 2008 958 970
11. E. Evans, J.G. Moggs, J.R. Hwang, J.M. Egly, and R.D. Wood Mechanism of open complex and dual incision formation by human nucleotide excision repair factors EMBO J. 16 1997 6559 6573
12. D. Mu, M. Wakasugi, D.S. Hsu, and A. Sancar Characterization of reaction intermediates of human excision repair nuclease J. Biol. Chem. 272 1997 28971 28979
13. T. Riedl, F. Hanaoka, and J.-M. Egly The comings and goings of nucleotide excision repair factors on damaged DNA EMBO J. 22 2003 5293 5303
14. F. Coin, J.-C. Marinoni, C. Rodolfo, S. Fribourg, A.M. Pedrini, and J.-M. Egly Mutations in the XPD helicase gene result in XP and TTD phenotypes, preventing interaction between XPD and the p44 subunit of TFIIH Nat. Genet. 20 1998 184 188
15. F. Coin, V. Oksenych, and J.-M. Egly Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair Mol. Cell 26 2007 245 256
16. E.C. Friedberg How nucleotide excision repair protects against cancer Nat. Rev. Cancer 1 2001 22 33
17. A.R. Lehmann The xeroderma pigmentosum group D (XPD) gene: one gene, two functions, three diseases Genes Dev. 15 2001 15 23
18. J.H. Hoeijmakers DNA damage, aging, and cancer N. Engl. J. Med. 361 2009 1475 1485
19. T. Hey, G. Lipps, K. Sugasawa, S. Iwai, F. Hanaoka, and G. Krauss The XPC-HR23B complex displays high affinity and specificity for damaged DNA in a true-equilibrium fluorescence assay Biochemistry 41 2002 6583 6587
20. Y.S. Krasikova, N.I. Rechkunova, E.A. Maltseva, I.O. Petruseva, V.N. Silnikov, T.S. Zatsepin, T.S. Oretskaya, O.D. Schärer, and O.I. Lavrik Interaction of nucleotide excision repair factors XPC-HR23B, XPA, and RPA with damaged DNA Biochemistry (Mosc.) 73 2008 886 896
21. Y. Roche, D. Zhang, G.M. Segers-Nolten, W. Vermeulen, C. Wyman, K. Sugasawa, J. Hoeijmakers, and C. Otto Fluorescence correlation spectroscopy of the binding of nucleotide excision repair protein XPC-hHr23B with DNA substrates J. Fluoresc. 18 2008 987 995
22. D. Hoogstraten, S. Bergink, J.M. Ng, V.H. Verbiest, M.S. Luijsterburg, B. Geverts, A. Raams, C. Dinant, J.H. Hoeijmakers, W. Vermeulen, and A.B. Houtsmuller Versatile DNA damage detection by the global genome nucleotide excision repair protein XPC J. Cell Sci. 121 2008 2850 2859
23. L. Solimando, M.S. Luijsterburg, L. Vecchio, W. Vermeulen, R. van Driel, and S. Fakan Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus J. Cell Sci. 122 2009 83 91
24. J. Fei, N. Kaczmarek, A. Luch, A. Glas, T. Carell, and H. Naegeli Regulation of nucleotide excision repair by UV-DDB: prioritization of damage recognition to internucleosomal DNA PLoS Biol. 9 2011 e1001183
25. J.O. Fuss, and J.A. Tainer XPB and XPD helicases in TFIIH orchestrate DNA duplex opening and damage verification to coordinate repair with transcription and cell cycle via CAK kinase DNA Repair (Amst.) 10 2011 697 713
26. E. Compe, and J.M. Egly TFIIH: when transcription met DNA repair Nat. Rev. Mol. Cell Biol. 13 2012 343 354
27. F. Coin, V. Oksenych, V. Mocquet, S. Groh, C. Blattner, and J.-M. Egly Nucleotide excision repair driven by the dissociation of CAK from TFIIH Mol. Cell 31 2008 9 20
28. K. Sugasawa, J. Akagi, R. Nishi, S. Iwai, and F. Hanaoka Two-step recognition of DNA damage for mammalian nucleotide excision repair: Directional binding of the XPC complex and DNA strand scanning Mol. Cell 36 2009 642 653
29. L. Fan, J.O. Fuss, Q.J. Cheng, A.S. Arvai, M. Hammel, V.A. Roberts, P.K. Cooper, and J.A. Tainer XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations Cell 133 2008 789 800
30. H. Liu, J. Rudolf, K.A. Johnson, S.A. McMahon, M. Oke, L. Carter, A.-M. McRobbie, S.E. Brown, J.H. Naismith, and M.F. White Structure of the DNA repair helicase XPD Cell 133 2008 801 812
31. S.C. Wolski, J. Kuper, P. Hänzelmann, J.J. Truglio, D.L. Croteau, B. Van Houten, and C. Kisker Crystal structure of the FeS cluster-containing nucleotide excision repair helicase XPD PLoS Biol. 6 2008 e149
32. J. Kuper, S.C. Wolski, G. Michels, and C. Kisker Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocation EMBO J. 31 2012 494 502
33. A.E. Gorbalenya, E.V. Koonin, A.P. Donchenko, and V.M. Blinov Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes Nucleic Acids Res. 17 1989 4713 4730
34. M. Carreau, E. Eveno, X. Quilliet, O. Chevalier-Lagente, A. Benoit, B. Tanganelli, M. Stefanini, W. Vermeulen, J.H. Hoeijmakers, A. Sarasin, and M. Mezzina Development of a new easy complementation assay for DNA repair deficient human syndromes using cloned repair genes Carcinogenesis 16 1995 1003 1009
35. O. Maillard, S. Solyom, and H. Naegeli An aromatic sensor with aversion to damaged strands confers versatility to DNA repair PLoS Biol. 5 2007 e79
36. G.S. Winkler, S.J. Araújo, U. Fiedler, W. Vermeulen, F. Coin, J.-M. Egly, J.H. Hoeijmakers, R.D. Wood, H.T. Timmers, and G. Weeda TFIIH with inactive XPD helicase functions in transcription initiation but is defective in DNA repair J. Biol. Chem. 275 2000 4258 4266
37. J.Y. Tang, B.J. Hwang, J.M. Ford, P.C. Hanawalt, and G. Chu Xeroderma pigmentosum p48 gene enhances global genomic repair and suppresses UV-induced mutagenesis Mol. Cell 5 2000 737 744
38. S. Dubaele, L. Proietti De Santis, R.J. Bienstock, A. Keriel, M. Stefanini, B. Van Houten, and J.-M. Egly Basal transcription defect discriminates between xeroderma pigmentosum and trichothiodystrophy in XPD patients Mol. Cell 11 2003 1635 1646
39. V. Oksenych, B. Bernardes de Jesus, A. Zhovmer, J.-M. Egly, and F. Coin Molecular insights into the recruitment of TFIIH to sites of DNA damage EMBO J. 28 2009 2971 2980
40. N. Mathieu, N. Kaczmarek, and H. Naegeli Strand- and site-specific DNA lesion demarcation by the xeroderma pigmentosum group D helicase Proc. Natl. Acad. Sci. USA 107 2010 17545 17550
41. K. Sugasawa, Y. Okuda, M. Saijo, R. Nishi, N. Matsuda, G. Chu, T. Mori, S. Iwai, K. Tanaka, K. Tanaka, and F. Hanaoka UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex Cell 121 2005 387 400
42. R.A. Pugh, M. Honda, H. Leesley, A. Thomas, Y. Lin, M.J. Nilges, I.K. Cann, and M. Spies The iron-containing domain is essential in Rad3 helicases for coupling of ATP hydrolysis to DNA translocation and for targeting the helicase to the ssDNA-dsDNA junction J. Biol. Chem. 283 2007 1732 1743
43. M. Honda, J. Park, R.A. Pugh, T. Ha, and M. Spies Single-molecule analysis reveals differential effect of ssDNA-binding proteins on DNA translocation by XPD helicase Mol. Cell 35 2009 694 703
44. L.K. Gordon, and W.A. Haseltine Comparison of the cleavage of pyrimidine dimers by the bacteriophage T4 and Micrococcus luteus UV-specific endonucleases J. Biol. Chem. 255 1980 12047 12050
45. A.R. Lehmann XPD structure reveals its secrets DNA Repair (Amst.) 7 2008 1912 1915
46. R.A. Pugh, C.G. Wu, and M. Spies Regulation of translocation polarity by helicase domain 1 in SF2B helicases EMBO J. 31 2012 503 514
47. K.S. Trego, and J.J. Turchi Pre-steady-state binding of damaged DNA by XPC-hHR23B reveals a kinetic mechanism for damage discrimination Biochemistry 45 2006 1961 1969
48. T. Yasuda, K. Sugasawa, Y. Shimizu, S. Iwai, T. Shiomi, and F. Hanaoka Nucleosomal structure of undamaged DNA regions suppresses the non-specific DNA binding of the XPC complex DNA Repair (Amst.) 4 2005 389 395
49. J.-P. Lainé, and J.-M. Egly Initiation of DNA repair mediated by a stalled RNA polymerase IIO EMBO J. 25 2006 387 397
50. S. Alekseev, M.S. Luijsterburg, A. Pines, B. Geverts, P.O. Mari, G. Giglia-Mari, H. Lans, A.B. Houtsmuller, L.H. Mullenders, J.H. Hoeijmakers, and W. Vermeulen Cellular concentrations of DDB2 regulate dynamic binding of DDB1 at UV-induced DNA damage Mol. Cell. Biol. 28 2008 7402 7413