Chromatin assembly coupled to DNA repair: A new role for chromatin assembly factor I

Cell

Volumn 86, Issue 6, 1996, Pages 887-896

  Gaillard, Pierre Henri L ^a   Martini, Emmanuelle M D ^a   Kaufman, Paul D ^b   Stillman, Bruce ^b   Moustacchi, Ethel ^a   Almouzni, Geneviève ^a  

^a INSTITUT CURIE   (France)

^b Watson School of Biological Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ANIMAL CELL; ARTICLE; CHROMATIN; DNA DETERMINATION; DNA REPAIR; DNA SYNTHESIS; EXCISION REPAIR; HUMAN; HUMAN CELL; MICROINJECTION; NONHUMAN; PRIORITY JOURNAL; ULTRAVIOLET RADIATION; XENOPUS;

ANIMALIA; EUKARYOTA;

EID: 0030595338     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80164-6     Document Type: Article

References (64)

1. Aboussekhra, A., Biggerstaff, M., Shivji, M.K.K., Vilpo, J.A., Moncollin, V., Podust, V.N., Protic, M., Hübscher, U., Egly, J.-M., and Wood, R.D. (1995). Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 80, 859-868.
2. Almouzni, G., and Méchali, M. (1988a). Assembly of spaced chromatin involvement of ATP and DNA topoisomerase activity. EMBO J. 7, 4355-4365.
3. Almouzni, G., and Méchali, M. (1988b). Assembly of spaced Chromatin promoted by DNA synthesis in extracts from Xenopus eggs. EMBO J. 7, 665-672.
4. Almouzni, G., and Wolffe, A.P. (1993a). Nuclear assembly, structure, and function: the use of Xenopus in vitro systems. Exp. Cell Res. 205, 1-15.
5. Almouzni, G., and Wolffe, A.P. (1993b). Replication-coupled chromatin assembly is required for the repression of basal transcription in vivo. Genes Dev. 7, 2033-2047.
6. Almouzni, G., Méchali, M., and Wolffe, A.P. (1991). Transcription complex disruption caused by a transition in chromatin structure. Mol. Cell. Biol. 11, 655-665.
7. Banerjee, S., and Cantor, C.R. (1990). Nucleosome assembly of simian virus 40 DNA in a mammalian cell extract. Mol. Cell. Biol. 10, 2863-2873.
8. Becker, P.B. (1994). The establishment of active promoters in chromatin. Bioessays 16, 541-547.
9. Becker, P.B., and Wu, C. (1992). Cell-free system for assembly of transcriptionally repressed chromatin from Drosophila embryos. Mol. Cell. Biol. 12, 2241-2249.
10. Blow, J.J., and Laskey, R.A. (1986). Initiation of DNA replication in nuclei and purified DNA by cell-free extracts of Xenopus eggs. Cell 47, 577-587.
11. Bradford, M.M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing a principle of protein dye binding. Anal. Biochem. 72, 248-254.
12. Bulger, M., Ito, T., Kamakaka, R.T., and Kadonaga, J.T. (1995). Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein. Proc. Natl. Acad. Sci. USA 92, 11726-11730.
13. Coverley, D., Kenny, M.K., Lane, D.P., and Wood, R.D. (1992). A role for the human single stranded DNA binding protein HSSB/RPA in an early stage of nucleotide excision repair. Nucleic Acids Res. 20, 3873-3880.
14. Dilworth, S.M., Black, S.J., and Laskey, R.A. (1987). Two complexes that contain histones are required for nucleosome assembly in vitro: role of nucleoplasmin and N1 in Xenopus egg extracts. Cell 51, 1009-1018.
15. Friedberg, E.C., Walker, G.C., and Siede, W. (1995). DNA Repair and Mutagenesis (Washington D.C.: ASM Press).
16. Germond, J.E., Rouvière-Yaniv, J., Yaniv, M., and Brutlag, D. (1979). Nicking-closing enzyme assembles nucleosome-like structures in vitro. Proc. Natl. Acad. Sci. USA 76, 3779-3783.
17. Glikin, G.C., Ruberti, I., and Worcel, A. (1984). Chromatin assembly in Xenopus oocytes: in vitro studies. Cell 37, 33-41.
18. Gruss, C., Gutierrez, C., Burhans, W.C., DePamphilis, M.L., and Sogo, J.M. (1990). Nucleosome assembly in mammalian cell extracts before and after DNA replication. EMBO J. 9, 2911-2922.
19. Gruss, C., Wu, J., Koller, T., and Sogo, J.M. (1993). Disruption of the nucleosome at the replication fork. EMBO J. 12, 4533-4545.
20. Gurdon, J.B., and Wakefield, L. (1986). Microinjection of amphibian oocytes and eggs for the analysis of transcription. Microinjection and organelle transplantation techniques. Methods Cell Biol. 15, 270-299.
21. Ishimi, Y., and Kikuchi, A. (1991). Identification and molecular cloning of yeast homolog of nucleosome assembly protein I which facilitates nucleosome assembly in vitro. J. Biol. Chem. 266, 7025-7029.
22. Ishimi, Y., Hirosumi, J., Sato, W., Sugasawa, K., Yokota, S., Hanaoka, F., and Yamada, M. (1984). Purification and initial characterization of a protein which facilitates assembly of nucleosome-like structure from mammalian cell. Eur. J. Biochem. 142, 431-439.
23. Kamakaka, R.T., Bulger, M., and Kadonaga, J.T. (1993). Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly. Genes Dev. 7, 1779-1795.
24. Kamakaka, R.T., Bulger, M., Kaufman, P.D., Stillman, B., and Kadonaga, J.T. (1996). Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor I. Mol. Cell. Biol. 16, 810-817.
25. Kaufman, P.D., Kobayashi, R., Kessler, N., and Stillman, B. (1995). The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication. Cell 81, 1105-1114.
26. Kleinschmidt, J.A., Fortkamp, E., Krohne, G., Zentgraf, H., and Franke, W.W. (1985). Co-existence of two different types of soluble histone complexes in nuclei of Xenopus laevis oocytes. J. Biol. Chem. 260, 1166-1176.
27. Kleinschmidt, J.A., Seiter, A., and Zentgraf, H. (1990). Nucleosome assembly in vitro: separate histone transfer and synergistic interaction of native histone complexes purified from nuclei of Xenopus laevis oocytes. EMBO J. 9, 1309-1318.
28. Kornberg, R.D., and Lorch, Y. (1992). Chromatin structure and transcription. Annu. Rev. Cell Biol. 8, 563-587.
29. Kornberg, R.D., and Lorch, Y. (1995). Interplay between chromatin structure and transcription. Curr. Opin. Cell Biol. 7, 371-375.
30. Krude, T. (1995a). Chromatin assembly factor 1 (CAF-1) colocalizes with replication foci in HeLa cell nuclei. Exp. Cell Res. 220, 304-311.
31. Krude, T. (1995b). Nucleosome assembly during DNA replication. Curr. Biol. 5, 1232-1234.
32. Laskey, R.A., Mills, A.D., and Morris, N.R. (1977). Assembly of SV40 chromatin in a cell-free system from Xenopus eggs. Cell 10, 237-243.
33. Laskey, R.A., Honda, B.M., Mills, A.D., and Finch, J.T. (1978). Nucleosomes are assembled by an acidic protein which binds histones and transfers them to DNA. Nature 275, 416-420.
34. Laskey, R.A., Mills, A.D., Philpott, A., Leno, G.H., Dilworth, S.M., and Dingwall, C. (1993). The role of nucleoplasmin in chromatin assembly and disassembly. Philos. Trans. R. Soc. Lond. Biol. 339, 263-269.
35. Legerski, R., Penkala, J., Peterson, C., and Wright, D. (1987). Repair of UV-induced lesions in Xenopus laevis oocytes. Mol. Cell. Biol. 7, 4317-4323.
36. Li, J.J., and Kelly, T.J. (1985). SV40 DNA replication in vitro: specificity of initiation and evidence for bidirectional replication. Mol. Cell. Biol. 5, 12038-12046.
37. Matsumoto, H., Takakusu, A., Mori, T., Ihara, M., Todo, T., and Ohnishi, T. (1995). Preferential inhibition of nucleosome assembly by UV-induced (6-4) photoproducts. Phot. Phot. 61, 459-462.
38. Moggs, J.G., Yarema, K.J., Essigmann, J.M., and Wood, R.D. (1996). Analysis of incision sites produced by human cell extracts and purified proteins during nucleotide excision repair of a 1,3-intrastrand d(GpTpG)-Cisplatin adduct. J. Biol. Chem. 271, 7177-7186.
39. Nelson, T., Hsieh,T.-S., and Brutlag, D. (1979). Extacts of Drosophila embryos mediate chromatin assembly in vitro. Proc. Natl. Acad. Sci. USA 76, 5510-5514.
40. Nelson, T., Wiegand, R., and Brutlag, D. (1981). Ribonucleic acid and other polyanions facilitate chromatin assembly in vitro. Biochemistry 20, 2594-2601.
41. Nichols, A.F., and Sancar, A. (1992). Purification of PCNA as a nucleotide excision repair protein. Nucleic Acids Res. 20, 3559-3564.
42. Owen-Hughes, T., and Workman, J.L. (1994). Experimental analysis of chromatin function in transcription control. Crit. Rev. Eukaryot. Gene Expr. 4, 403-441.
43. Paranjape, S.M., Kamakaka, R.T., and Kadonaga, J.T. (1994). Role of chromatin structure in the regulation of transcription by RNA polymerase II. Annu. Rev. Biochem. 63, 265-297.
44. Ryoji, M., Tominna, E., and Yasui, W. (1989). Minichromosome assembly accompanying repair-type DNA synthesis in Xenopus oocytes. Nucleic Acids Res. 17, 10243-10258.
45. Saxena, J., Hays, J., and Ackerman, E. (1990). Excision repair of UV-damaged plasmid DNA in Xenopus oocytes is mediated by DNA polymerase alpha (and/or delta). Nucleic Acids Res. 18, 7425-7432.
46. Sealy, L., Cotten, M., and Chalkley, R. (1986). Xenopus nucleoplasmin: egg versus oocyte. Biochemistry 25, 3064-3072.
47. Shivji, M.K.K., Grey, S.J., Strausfeld, U.P., Wood, R.D., and Blow, J.J. (1994). Cip1 inhibits DNA replication but not PCNA-dependent nucleotide excision repair. Curr. Biol. 4, 1062-1068.
48. Smerdon, M. (1992). DNA excision repair at the nucleosome level of chromatin. In DNA Repair Mechanisms and Their Biological Implications in Mammalian Cells, M.W. Lambertand and J. Laval, eds. (New York: Plenum Press).
49. Smith, S., and Stillman, B. (1989). Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58, 15-25.
50. Smith, S., and Stillman, B. (1991). Immunological characterization of chromatin assembly factor I, a human cell factor required for chromatin assembly during DNA replication in vitro. J. Biol. Chem. 266, 12041 -12047.
51. Sogo, J.M., Stahl, H., Koller, T., and Knippers, R. (1986). Structure of replicating SV40 minichromosomes. J. Mol. Biol. 189, 189-204.
52. Stillman, B. (1986). Chromatin assembly during SV40 DNA replication in vitro. Cell 45, 555-565.
53. Sugasawa, K., Masutani, C., and Hanaoka, F. (1993). Cell-free repair of UV-damaged SV40 chromosomes in human cell extracts. J. Biol. Chem. 268, 9098-9104.
54. Svoboda, D.L., Taylor, J.S., Hearst, J.E., and Sancar, A. (1993). DNA repair by eukaryotic nuclease. Removal of thymine dimer and psoralen monoadduct by HeLa cell-free extract and thymine dimer by Xenopus laevis oocytes. J. Biol. Chem. 268, 1931-1936.
55. Szymkowski, D.E., Yarema, K., Essigmann, J.M., Lippard, S.J., and Wood, R.D. (1992). An intrastrand d(GpG) platinum crosslink in duplex M13 DNA is refractory to repair by human cell extracts. Proc. Natl. Acad. Sci. USA 89, 10772-10776.
56. Travers, A.A. (1994). Chromatin structure and dynamics. Bioessays 16, 657-662.
57. Turner, B.M. (1995). Histone H4, the cell cycle and a question of integrity. Bioessays 17, 1013-1015.
58. Wang, Z., Wu, X., and Friedberg, E.C. (1991). Nucleotide excision repair of DNA by human cell extracts is suppressed in reconstituted nucleosomes. J. Biol. Chem. 266, 22472-22478.
59. Weinberg, D.H., and Kelly, T.J. (1989). Requirement for two DNA polymerases in the replication of simian virus 40 DNA in vitro Proc. Natl. Acad. Sci. USA 86, 9742-9746.
60. Wolffe, A.P. (1994a). Inheritance of chromatin states. Dev. Genet. 75, 463-470.
61. Wolffe, A.P. (1994b). The transcription of chromatin templates. Curr. Opin. Genet. Dev. 4, 245-254.
62. Wood, R.D., Robins, P., and Lindahl, T. (1988). Complementation of the Xeroderma pigmentosum DNA repair defect in cell-free extracts. Cell 53, 97-106.
63. Wood, R.D., Aboussekhra, A., Biggerstaff, M., Jones, C.J., O'Donovan, A., Shivji, M.K.K., and Szymkovski, D.E. (1993). Nucleotide excision repair of DNA by mammalian cell extracts and purified proteins. Cold Spring Harbor Symp. Quant. Biol. 58, 625-632.
64. Wood, R.D., Biggerstaff, M., and Shivji, M.K.K. (1995). Detection and measurement of nucleotide excision repair synthesis by mammalian cell extracts in vitro. Methods: a Companion to Methods in Enzymology 7, 163-175.