ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes

EMBO Journal

Volumn 20, Issue 8, 2001, Pages 2004-2014

  Ura, Kiyoe ^a   Araki, Marito ^b,c   Saeki, Hideaki ^a   Masutani, Chikahide ^b   Ito, Takashi ^d   Iwai, Shigenori ^e   Mizukoshi, Toshimi ^e   Kaneda, Yasufumi ^a   Hanaoka, Fumio ^b  

^a OSAKA UNIVERSITY MEDICAL SCHOOL   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c DUKE UNIVERSITY MEDICAL CENTER   (United States)

^d SAITAMA MEDICAL UNIVERSITY   (Japan)

^e BIOMOL ENG RESEARCH INSTITUTE   (Japan)

Author keywords

ACF; Chromatin remodeling; DNA damage; Nucleosome; Nucleotide excision repair

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA; HISTONE H1; NUCLEOTIDE EXCISION REPAIR PROTEIN; PROTEIN; PYRIMIDINE; PYRIMIDINONE DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; CHROMATIN; CHROMATIN STRUCTURE; DNA DAMAGE; DNA REPAIR; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN ASSEMBLY; ULTRAVIOLET RADIATION;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; CHROMATIN; DNA DAMAGE; DNA REPAIR; NUCLEOSOMES; PYRIMIDINE DIMERS; SUBSTRATE SPECIFICITY; TRANSCRIPTION FACTORS; ULTRAVIOLET RAYS;

NEGIBACTERIA;

EID: 0035901558     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/20.8.2004     Document Type: Article

References (46)

1. Reconstitution of damage DNA excision reaction from SV40 minichromosomes with purified nucleotide excision repair proteins
2. Nucleotide excision repair of DNA with recombinant human proteins: Definition of the minimal set of factors, active forms of TFIIH and modulation by CAK
3. Damage recognition in nucleotide excision repair of DNA
4. dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties
5. Molecular mechanism of nucleotide excision repair
6. Alkaline lability of fluorescent photoproducts produced in ultraviolet light-irradiated DNA
7. Chromatin assembly coupled to DNA repair: A new role for chromatin assembly factor I
8. UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases
9. Multiple ISWI ATPase complexes from Xenopus laevis: Functional conservation of an ACF/CHRAC homolog
10. ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF
11. DNA damage in the nucleosome core is refractory to repair by human excision nuclease
12. Determination of minimum substrate size for human excinuclease
13. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor
14. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly
15. p300-mediated acetylation facilitates the transfer of histone H2A-H2B dimers from nucleosomes to a histone chaperone
16. The solution structure of DNA duplex-decamer containing the (6-4) photoproduct of thymidylyl (3′→5′)thymidine by NMR and relaxation matrix refinement
17. ATP-dependent remodeling and acetylation as regulators of chromatin fluidity
18. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
19. Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer
20. Purification and characterization of a human factor that assembles and remodels chromatin
21. Nucleotide excision repair of the 5S ribosomal RNA gene assembled into a nucleosome
22. Ultraviolet damage and nucleosome folding of the 5S ribosomal RNA gene
23. Crystal structure of the nucleosome core particle at 2.8 Å resolution
24. Nonrandom induction of pyrimidine-pyrimidone (6-4) photoproducts in ultraviolet-irradiated human chromatin
25. Studies on the chemical synthesis of oligonucleotides containing the (6-4) photoproduct of thymine-cytosine and its repair by (6-4) photolyase
26. A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damage
27. Interaction of the yeast RAD7 and SIR3 proteins: Implications for DNA repair and chromatin structure
28. Probing the conformation of nucleosome linker DNA in situ with pyrimidine dimer formation
29. Formation and processing of UV photoproducts: Effects of DNA sequence and chromatin environment
30. DNA excision repair
31. Atomic force microscopy sees nucleosome positioning and histone H1-induced compaction in reconstituted chromatin
32. Modulation of cyclobutane pyrimidine dimer formation in a positioned nucleosome containing poly(dA.dT) tracts
33. Site-specific repair of cyclobutane pyrimidine dimers in a positioned nucleosome by photolyase and T4 endonuclease V in vitro
34. A chromatin remodelling complex involved in transcription and DNA processing
35. Light and dark in chromatin repair: Repair of UV-induced DNA lesions by photolyase and nucleotide excision repair
36. RNA polymerase II transcription suppresses nucleosomal modulation of UV-induced (6-4) photoproduct and cyclobutane pyrimidine dimer repair in yeast
37. A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: Restriction by linker histones
38. Differential association of HMG1 and linker histones B4 and H1 with dinucleosomal DNA: Structural transitions and transcriptional repression
39. Histone acetylation: Influence on transcription, nucleosome mobility and positioning and linker histone-dependent transcriptional repression
40. De novo nucleosome assembly: New pieces in an old puzzle
41. ATP-dependent chromatin-remodeling complexes
42. Site-specific effect of thymine dimer formation on dAn.dTn tract bending and its biological implications
43. Nucleosome structure and positioning modulate nucleotide excision repair in the nontranscribed strand of an active gene
44. Alternative repair pathways for UV-induced DNA damage