-
1
-
-
34848918829
-
Comparing the DNA hypermethylome with gene mutations in human colorectal cancer
-
DOI 10.1371/journal.pgen.0030157
-
Schuebel KE, Chen W, Cope L et al. Comparing the DNA hypermethylome with gene mutations in human colorectal cancer. PLoS Genet. 3, 1709-1723 (2007) (Pubitemid 47510263)
-
(2007)
PLoS Genetics
, vol.3
, Issue.9
, pp. 1709-1723
-
-
Schuebel, K.E.1
Chen, W.2
Cope, L.3
Glockner, S.C.4
Suzuki, H.5
Yi, J.-M.6
Chan, T.A.7
Van Neste, L.8
Van Criekinge, W.9
Van Den Bosch, S.10
Van Engeland, M.11
Ting, A.H.12
Jair, K.13
Yu, W.14
Toyota, M.15
Imai, K.16
Ahuja, N.17
Herman, J.G.18
Baylin, S.B.19
-
2
-
-
75649094543
-
Aberrant DNA methylation in contrast with mutations
-
Ushijima T, Asada K. Aberrant DNA methylation in contrast with mutations. Cancer Sci. 101, 300-305 (2010)
-
(2010)
Cancer Sci.
, vol.101
, pp. 300-305
-
-
Ushijima, T.1
Asada, K.2
-
4
-
-
53549095222
-
Loss of the epigenetic tumor suppressor SNF5 leads to cancer without genomic instability
-
McKenna ES, Sansam CG, Cho YJ et al. Loss of the epigenetic tumor suppressor SNF5 leads to cancer without genomic instability. Mol. Cell. Biol. 28, 6223-6233 (2008)
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 6223-6233
-
-
McKenna, E.S.1
Sansam, C.G.2
Cho, Y.J.3
-
5
-
-
84862777113
-
A novel retinoblastoma therapy from genomic and epigenetic analyses
-
Zhang J, Benavente CA, McEvoy J et al. A novel retinoblastoma therapy from genomic and epigenetic analyses. Nature 481, 329-334 (2012)
-
(2012)
Nature
, vol.481
, pp. 329-334
-
-
Zhang, J.1
Benavente, C.A.2
McEvoy, J.3
-
6
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
Bird AP. CpG-rich islands and the function of DNA methylation. Nature 321, 209-213 (1986) (Pubitemid 16016411)
-
(1986)
Nature
, vol.321
, Issue.6067
, pp. 209-213
-
-
Bird, A.P.1
-
7
-
-
0345357773
-
Gene silencing in cancer in association with promoter hypermethylation
-
DOI 10.1056/NEJMra023075
-
Herman JG, Baylin SB. Gene silencing in cancer in association with promoter hypermethylation. N. Engl. J. Med. 349, 2042-2054 (2003) (Pubitemid 37448928)
-
(2003)
New England Journal of Medicine
, vol.349
, Issue.21
, pp. 2042-2054
-
-
Herman, J.G.1
Baylin, S.B.2
-
8
-
-
0032890965
-
The DNA methylation paradox
-
DOI 10.1016/S0168-9525(98)01636-9, PII S0168952598016369
-
Jones PA. The DNA methylation paradox. Trends Genet. 15, 34-37 (1999) (Pubitemid 29207343)
-
(1999)
Trends in Genetics
, vol.15
, Issue.1
, pp. 34-37
-
-
Jones, P.A.1
-
9
-
-
84856474843
-
Intragenic DNA methylation: Implications of this epigenetic mechanism for cancer research
-
Shenker N, Flanagan JM. Intragenic DNA methylation: implications of this epigenetic mechanism for cancer research. Br. J. Cancer 106, 248-253 (2012)
-
(2012)
Br. J. Cancer
, vol.106
, pp. 248-253
-
-
Shenker, N.1
Flanagan, J.M.2
-
10
-
-
77954661906
-
DNA hypomethylation in cancer cells
-
Ehrlich M. DNA hypomethylation in cancer cells. Epigenomics 1, 239-259 (2009)
-
(2009)
Epigenomics
, vol.1
, pp. 239-259
-
-
Ehrlich, M.1
-
11
-
-
38349135680
-
High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer
-
Rauch TA, Zhong X, Wu X et al. High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer. Proc. Natl Acad. Sci. USA 105, 252-257 (2008)
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 252-257
-
-
Rauch, T.A.1
Zhong, X.2
Wu, X.3
-
12
-
-
71849113808
-
Genome-wide DNA methylation profiles in precancerous conditions and cancers
-
Kanai Y. Genome-wide DNA methylation profiles in precancerous conditions and cancers. Cancer Sci. 101, 36-45 (2010)
-
(2010)
Cancer Sci.
, vol.101
, pp. 36-45
-
-
Kanai, Y.1
-
13
-
-
77957350610
-
Identification of driver and passenger DNA methylation in cancer by epigenomic analysis
-
Kalari S, Pfeifer GP. Identification of driver and passenger DNA methylation in cancer by epigenomic analysis. Adv. Genet. 70, 277-308 (2010)
-
(2010)
Adv. Genet.
, vol.70
, pp. 277-308
-
-
Kalari, S.1
Pfeifer, G.P.2
-
14
-
-
33846569960
-
A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing
-
DOI 10.1038/ng1972, PII NG1972
-
Ohm JE, McGarvey KM, Yu X et al. A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. Nat. Genet. 39, 237-242 (2007) (Pubitemid 46184356)
-
(2007)
Nature Genetics
, vol.39
, Issue.2
, pp. 237-242
-
-
Ohm, J.E.1
McGarvey, K.M.2
Yu, X.3
Cheng, L.4
Schuebel, K.E.5
Cope, L.6
Mohammad, H.P.7
Chen, W.8
Daniel, V.C.9
Yu, W.10
Berman, D.M.11
Jenuwein, T.12
Pruitt, K.13
Sharkis, S.J.14
Watkins, D.N.15
Herman, J.G.16
Baylin, S.B.17
-
15
-
-
33846576622
-
Epigenetic stem cell signature in cancer
-
DOI 10.1038/ng1941, PII NG1941
-
Widschwendter M, Fiegl H, Egle D et al. Epigenetic stem cell signature in cancer. Nat. Genet. 39, 157-158 (2007) (Pubitemid 46184343)
-
(2007)
Nature Genetics
, vol.39
, Issue.2
, pp. 157-158
-
-
Widschwendter, M.1
Fiegl, H.2
Egle, D.3
Mueller-Holzner, E.4
Spizzo, G.5
Marth, C.6
Weisenberger, D.J.7
Campan, M.8
Young, J.9
Jacobs, I.10
Laird, P.W.11
-
16
-
-
68149163117
-
PCR-based methods for detecting single-locus DNA methylation biomarkers in cancer diagnostics, prognostics, and response to treatment
-
Kristensen LS, Hansen LL. PCR-based methods for detecting single-locus DNA methylation biomarkers in cancer diagnostics, prognostics, and response to treatment. Clin. Chem. 55, 1471-1483 (2009)
-
(2009)
Clin. Chem.
, vol.55
, pp. 1471-1483
-
-
Kristensen, L.S.1
Hansen, L.L.2
-
17
-
-
0344844471
-
Death-associated protein kinase promoter hypermethylation in normal human lymphocytes
-
Reddy AN, Jiang WW, Kim M et al. Death-associated protein kinase promoter hypermethylation in normal human lymphocytes. Cancer Res. 63, 7694-7698 (2003) (Pubitemid 37466698)
-
(2003)
Cancer Research
, vol.63
, Issue.22
, pp. 7694-7698
-
-
Reddy, A.N.1
Jiang, W.W.2
Kim, M.3
Benoit, N.4
Taylor, R.5
Clinger, J.6
Sidransky, D.7
Califano, J.A.8
-
18
-
-
70449366014
-
Detection of MGMT promoter methylation in normal individuals is strongly associated with the T allele of the rs16906252 MGMT promoter single nucleotide polymorphism
-
Candiloro IL, Dobrovic A. Detection of MGMT promoter methylation in normal individuals is strongly associated with the T allele of the rs16906252 MGMT promoter single nucleotide polymorphism. Cancer Prev. Res. 2, 862-867 (2009)
-
(2009)
Cancer Prev. Res.
, vol.2
, pp. 862-867
-
-
Candiloro, I.L.1
Dobrovic, A.2
-
19
-
-
0036324919
-
Epigenetic variation and human disease
-
Issa JP. Epigenetic variation and human disease. J. Nutr. 132, 2388S-2392S (2002)
-
(2002)
J. Nutr.
, vol.132
-
-
Issa, J.P.1
-
20
-
-
0033135049
-
Methylation of CpG in a small region of the hMLH1 promoter invariably correlates with the absence of gene expression
-
Deng G, Chen A, Hong J, Chae HS, Kim YS. Methylation of CpG in a small region of the hMLH1 promoter invariably correlates with the absence of gene expression. Cancer Res. 59, 2029-2033 (1999) (Pubitemid 29217657)
-
(1999)
Cancer Research
, vol.59
, Issue.9
, pp. 2029-2033
-
-
Deng, G.1
Chen, A.2
Hong, J.3
Chae, H.S.4
Kim, Y.S.5
-
21
-
-
77952519089
-
DNA methylation as a universal biomarker
-
Levenson VV. DNA methylation as a universal biomarker. Expert Rev. Mol. Diagn. 10(4), 481-488 (2010)
-
(2010)
Expert Rev. Mol. Diagn.
, vol.10
, Issue.4
, pp. 481-488
-
-
Levenson, V.V.1
-
22
-
-
69249114294
-
CpG methylation analysis - current status of clinical assays and potential applications in molecular diagnostics: A report of the association for molecular pathology
-
Sepulveda AR, Jones D, Ogino S et al. CpG methylation analysis - current status of clinical assays and potential applications in molecular diagnostics: a report of the association for molecular pathology. J. Mol. Diagn. 11, 266-278 (2009)
-
(2009)
J. Mol. Diagn.
, vol.11
, pp. 266-278
-
-
Sepulveda, A.R.1
Jones, D.2
Ogino, S.3
-
23
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer M, McDonald LE, Millar DS et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl Acad. Sci. USA 89, 1827-1831 (1992)
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
-
24
-
-
0036314222
-
Conversion-specific detection of DNA methylation using real-time polymerase chain reaction (ConLight-MSP) to avoid false positives
-
DOI 10.1016/S1046-2023(02)00062-2, PII S1046202302000622
-
Rand K, Qu W, Ho T, Clark SJ, Molloy P. Conversion-specific detection of DNA methylation using real-time polymerase chain reaction ConLight-MSP to avoid false positives. Methods 27, 114-120 (2002) (Pubitemid 34757121)
-
(2002)
Methods
, vol.27
, Issue.2
, pp. 114-120
-
-
Rand, K.1
Qu, W.2
Ho, T.3
Clark, S.J.4
Molloy, P.5
-
25
-
-
42449142344
-
Sensitive melting analysis after real time-methylation specific PCR (SMART-MSP): High-throughput and probe-free quantitative DNA methylation detection
-
Kristensen LS, Mikeska T, Krypuy M, Dobrovic A. Sensitive melting analysis after real time-methylation specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection. Nucl. Acids Res. 36, E42 (2008)
-
(2008)
Nucl. Acids Res.
, vol.36
-
-
Kristensen, L.S.1
Mikeska, T.2
Krypuy, M.3
Dobrovic, A.4
-
26
-
-
0035407651
-
Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
-
Grunau C, Clark SJ, Rosenthal A. Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucl. Acids Res. 29, E65 (2001)
-
(2001)
Nucl. Acids Res
, vol.29
-
-
Grunau, C.1
Clark, S.J.2
Rosenthal, A.3
-
27
-
-
0030697141
-
Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
-
DOI 10.1093/nar/25.21.4422
-
Warnecke PM, Stirzaker C, Melki JR et al. Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA. Nucl. Acids Res. 25, 4422-4426 (1997) (Pubitemid 27485227)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.21
, pp. 4422-4426
-
-
Warnecke, P.M.1
Stirzaker, C.2
Melki, J.R.3
Millar, D.S.4
Paul, C.L.5
Clark, S.J.6
-
28
-
-
34047226121
-
Reversal of PCR bias for improved sensitivity of the DNA methylation melting curve assay
-
DOI 10.2144/000112240
-
Wojdacz TK, Hansen LL. Reversal of PCR bias for improved sensitivity of the DNA methylation melting curve assay. Biotechniques 41, 274-278 (2006) (Pubitemid 46534890)
-
(2006)
BioTechniques
, vol.41
, Issue.3
, pp. 274-278
-
-
Wojdacz, T.K.1
Hansen, L.L.2
-
29
-
-
33847736948
-
Optimizing annealing temperature overcomes bias in bisulfite PCR methylation analysis
-
Shen L, Guo Y, Chen X, Ahmed S, Issa JP. Optimizing annealing temperature overcomes bias in bisulfite PCR methylation analysis. Biotechniques 42, 48-58 (2007)
-
(2007)
Biotechniques
, vol.42
, pp. 48-58
-
-
Shen, L.1
Guo, Y.2
Chen, X.3
Ahmed, S.4
Issa, J.P.5
-
30
-
-
77955450160
-
The implications of heterogeneous DNA methylation for the accurate quantification of methylation
-
Mikeska T, Candiloro IL, Dobrovic A. The implications of heterogeneous DNA methylation for the accurate quantification of methylation. Epigenomics 2, 561-573 (2010)
-
(2010)
Epigenomics
, vol.2
, pp. 561-573
-
-
Mikeska, T.1
Candiloro, I.L.2
Dobrovic, A.3
-
31
-
-
79954526429
-
Assessing combined methylation-sensitive high resolution melting and pyrosequencing for the analysis of heterogeneous DNA methylation
-
Candiloro ILM, Mikeska T, Dobrovic A. Assessing combined methylation-sensitive high resolution melting and pyrosequencing for the analysis of heterogeneous DNA methylation. Epigenetics 6, 500-507 (2011)
-
(2011)
Epigenetics
, vol.6
, pp. 500-507
-
-
Candiloro, I.L.M.1
Mikeska, T.2
Dobrovic, A.3
-
32
-
-
0036898005
-
Effect of fixatives and tissue processing on the content and integrity of nucleic acids
-
Srinivasan M, Sedmak D, Jewell S. Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am. J. Pathol. 161, 1961-1971 (2002) (Pubitemid 35434840)
-
(2002)
American Journal of Pathology
, vol.161
, Issue.6
, pp. 1961-1971
-
-
Srinivasan, M.1
Sedmak, D.2
Jewell, S.3
-
33
-
-
80054737698
-
Analysing DNA methylation using bisulphite pyrosequencing
-
Mikeska T, Felsberg J, Hewitt CA, Dobrovic A. Analysing DNA methylation using bisulphite pyrosequencing. Methods Mol. Biol. 791, 33-53 (2011)
-
(2011)
Methods Mol. Biol.
, vol.791
, pp. 33-53
-
-
Mikeska, T.1
Felsberg, J.2
Hewitt, C.A.3
Dobrovic, A.4
-
34
-
-
34548722691
-
Rapid identification of promoter hypermethylation in hepatocellular carcinoma by pyrosequencing of etiologically homogeneous sample pools
-
DOI 10.2353/jmoldx.2007.060209
-
Dejeux E, Audard V, Cavard C et al. Rapid identification of promoter hypermethylation in hepatocellular carcinoma by pyrosequencing of etiologically homogeneous sample pools. J. Mol. Diagn. 9, 510-520 (2007) (Pubitemid 47434118)
-
(2007)
Journal of Molecular Diagnostics
, vol.9
, Issue.4
, pp. 510-520
-
-
Dejeux, E.1
Audard, V.2
Cavard, C.3
Gut, I.G.4
Terris, B.5
Tost, J.6
-
35
-
-
50049108528
-
Feeding pregnant rats a protein-restricted diet persistently alters the methylation of specific cytosines in the hepatic PPAR a promoter of the offspring
-
Lillycrop KA, Phillips ES, Torrens C et al. Feeding pregnant rats a protein-restricted diet persistently alters the methylation of specific cytosines in the hepatic PPAR a promoter of the offspring. Br. J. Nutr. 100, 278-282 (2008)
-
(2008)
Br. J. Nutr.
, vol.100
, pp. 278-282
-
-
Lillycrop, K.A.1
Phillips, E.S.2
Torrens, C.3
-
36
-
-
34247849498
-
Methylation-sensitive high resolution melting (MS-HRM): A new approach for sensitive and high-throughput assessment of methylation
-
Wojdacz TK, Dobrovic A. Methylation-sensitive high resolution melting (MS-HRM): a new approach for sensitive and high-throughput assessment of methylation. Nucl. Acids Res. 35, E41 (2007)
-
(2007)
Nucl. Acids Res.
, vol.35
-
-
Wojdacz, T.K.1
Dobrovic, A.2
-
37
-
-
84862582523
-
Methylation-sensitive high resolution melting for the rapid analysis of DNA methylation
-
Craig JM, Wong NC (Eds). Caister Academic Press, Norwich, UK
-
Mikeska T, Dobrovic A. Methylation-sensitive high resolution melting for the rapid analysis of DNA methylation. In: Epigenetics: A Reference Manual. Craig JM, Wong NC (Eds). Caister Academic Press, Norwich, UK, 325-335 (2011)
-
(2011)
Epigenetics: A Reference Manual
, pp. 325-335
-
-
Mikeska, T.1
Dobrovic, A.2
-
38
-
-
82955207575
-
Methylation-sensitive high-resolution melting in the context of legislative requirements for validation of analytical procedures for diagnostic applications
-
Wojdacz TK. Methylation-sensitive high-resolution melting in the context of legislative requirements for validation of analytical procedures for diagnostic applications. Expert Rev. Mol. Diagn. 12(1), 39-47 (2012)
-
(2012)
Expert Rev. Mol. Diagn.
, vol.12
, Issue.1
, pp. 39-47
-
-
Wojdacz, T.K.1
-
39
-
-
27644548948
-
Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry
-
DOI 10.1073/pnas.0507816102
-
Ehrich M, Nelson MR, Stanssens P et al. Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry. Proc. Natl Acad. Sci. USA 102, 15785-15790 (2005) (Pubitemid 41552820)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.44
, pp. 15785-15790
-
-
Ehrich, M.1
Nelson, M.R.2
Stanssens, P.3
Zabeau, M.4
Liloglou, T.5
Xinarianos, G.6
Cantor, C.R.7
Field, J.K.8
Van Den Boom, D.9
-
40
-
-
35648937679
-
Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: Critical evaluation and improvements
-
Coolen MW, Statham AL, Gardiner-Garden M, Clark SJ. Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements. Nucl. Acids Res. 35, E119 (2007)
-
(2007)
Nucl. Acids Res.
, vol.35
-
-
Coolen, M.W.1
Statham, A.L.2
Gardiner-Garden, M.3
Clark, S.J.4
-
41
-
-
82455206314
-
Evaluation of the Infinium Methylation 450K technology
-
Dedeurwaerder S, Defrance M, Calonne E et al. Evaluation of the Infinium Methylation 450K technology. Epigenomics 3, 771-784 (2011)
-
(2011)
Epigenomics
, vol.3
, pp. 771-784
-
-
Dedeurwaerder, S.1
Defrance, M.2
Calonne, E.3
-
42
-
-
77955633914
-
Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the illumina Infinium HumanMethylation27 Bead Chip
-
Thirlwell C, Eymard M, Feber A et al. Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the illumina Infinium HumanMethylation27 Bead Chip. Methods 52, 248-254 (2010)
-
(2010)
Methods
, vol.52
, pp. 248-254
-
-
Thirlwell, C.1
Eymard, M.2
Feber, A.3
-
43
-
-
84857217981
-
Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed, paraffin-embedded paired tumor and normal tissue
-
Jasmine F, Rahaman R, Roy S et al. Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed, paraffin-embedded paired tumor and normal tissue. BMC Res. Notes 5, 117 (2012)
-
(2012)
BMC Res. Notes
, vol.5
, pp. 117
-
-
Jasmine, F.1
Rahaman, R.2
Roy, S.3
-
44
-
-
34548734299
-
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing
-
DOI 10.1158/0008-5472.CAN-07-1016
-
Taylor KH, Kramer RS, Davis JW et al. Ultra deep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res. 67, 8511-8518 (2007) (Pubitemid 47437425)
-
(2007)
Cancer Research
, vol.67
, Issue.18
, pp. 8511-8518
-
-
Taylor, K.H.1
Kramer, R.S.2
Davis, J.W.3
Guo, J.4
Duff, D.J.5
Xu, D.6
Caldwell, C.W.7
Shi, H.8
-
45
-
-
38049073696
-
Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA
-
Korshunova Y, Maloney RK, Lakey N et al. Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA. Genome Res. 18, 19-29 (2008)
-
(2008)
Genome Res.
, vol.18
, pp. 19-29
-
-
Korshunova, Y.1
Maloney, R.K.2
Lakey, N.3
-
47
-
-
0029843950
-
Methylation-specific PCR: A novel PCR assay for methylation status of CpG islands
-
DOI 10.1073/pnas.93.18.9821
-
Herman JG, Graff JR, Myohanen S, Nelkin BD, Baylin SB. Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc. Natl Acad. Sci. USA 93, 9821-9826 (1996) (Pubitemid 26296693)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.18
, pp. 9821-9826
-
-
Herman, J.G.1
Graff, J.R.2
Myohanen, S.3
Nelkin, B.D.4
Baylin, S.B.5
-
48
-
-
57149111930
-
Reliability and reproducibility of PCR-based testing of O6-methylguanine-DNA methyltransferase gene (MGMT) promoter methylation status in formalin-fixed and paraffin-embedded neurosurgical biopsy specimens
-
Preusser M, Elezi L, Hainfellner JA. Reliability and reproducibility of PCR-based testing of O6-methylguanine-DNA methyltransferase gene MGMT promoter methylation status in formalin-fixed and paraffin-embedded neurosurgical biopsy specimens. Clin. Neuropathol. 27, 388-390 (2008)
-
(2008)
Clin. Neuropathol.
, vol.27
, pp. 388-390
-
-
Preusser, M.1
Elezi, L.2
Hainfellner, J.A.3
-
49
-
-
79953677481
-
Determination of the methylation status of MGMT in different regions within glioblastoma multiforme
-
Hamilton MG, Roldan G, Magliocco A et al. Determination of the methylation status of MGMT in different regions within glioblastoma multiforme. J. Neurooncol. 102, 255-260 (2011)
-
(2011)
J. Neurooncol.
, vol.102
, pp. 255-260
-
-
Hamilton, M.G.1
Roldan, G.2
Magliocco, A.3
-
50
-
-
20044372154
-
MGMT gene silencing and benefit from temozolomide in glioblastoma
-
DOI 10.1056/NEJMoa043331
-
Hegi ME, Diserens AC, Gorlia T et al. MGMT gene silencing and benefit from temozolomide in glioblastoma. N. Engl. J. Med. 352, 997-1003 (2005) (Pubitemid 40349502)
-
(2005)
New England Journal of Medicine
, vol.352
, Issue.10
, pp. 997-1003
-
-
Hegi, M.E.1
Diserens, A.-C.2
Gorlia, T.3
Hamou, M.-F.4
De Tribolet, N.5
Weller, M.6
Kros, J.M.7
Hainfellner, J.A.8
Mason, W.9
Mariani, L.10
Bromberg, J.E.C.11
Hau, P.12
Mirimanoff, R.O.13
Cairncross, J.G.14
Janzer, R.C.15
Stupp, R.16
-
51
-
-
0034654669
-
MethyLight: A high-throughput assay to measure DNA methylation
-
Eads CA, Danenberg KD, Kawakami K et al. MethyLight: a high-throughput assay to measure DNA methylation. Nucl. Acids Res. 28, E32 (2000)
-
(2000)
Nucl. Acids Res.
, vol.28
-
-
Eads, C.A.1
Danenberg, K.D.2
Kawakami, K.3
-
52
-
-
42649083650
-
Single-molecule polymerase chain reaction reduces bias: Application to DNA methylation analysis by bisulfite sequencing
-
Chhibber A, Schroeder BG. Single-molecule polymerase chain reaction reduces bias: application to DNA methylation analysis by bisulfite sequencing. Anal. Biochem. 377, 46-54 (2008)
-
(2008)
Anal. Biochem
, vol.377
, pp. 46-54
-
-
Chhibber, A.1
Schroeder, B.G.2
-
53
-
-
68149157845
-
Rapid analysis of heterogeneously methylated DNA using digital methylation-sensitive high resolution melting: Application to the CDKN2B (p15) gene
-
Candiloro IL, Mikeska T, Hokland P, Dobrovic A. Rapid analysis of heterogeneously methylated DNA using digital methylation-sensitive high resolution melting: application to the CDKN2B p15 gene. Epigenetics Chromatin 1, 7 (2008)
-
(2008)
Epigenetics Chromatin
, vol.1
, pp. 7
-
-
Candiloro, I.L.1
Mikeska, T.2
Hokland, P.3
Dobrovic, A.4
-
54
-
-
70249147655
-
Sensitive digital quantification of DNA methylation in clinical samples
-
Li M, Chen WD, Papadopoulos N et al. Sensitive digital quantification of DNA methylation in clinical samples. Nat. Biotechnol. 27(9), 858-863 (2009)
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.9
, pp. 858-863
-
-
Li, M.1
Chen, W.D.2
Papadopoulos, N.3
-
55
-
-
64449088698
-
Continuous base identification for single-molecule nanopore DNA sequencing
-
Clarke J, Wu HC, Jayasinghe L et al. Continuous base identification for single-molecule nanopore DNA sequencing. Nat. Nanotechnol. 4, 265-270 (2009)
-
(2009)
Nat. Nanotechnol.
, vol.4
, pp. 265-270
-
-
Clarke, J.1
Wu, H.C.2
Jayasinghe, L.3
-
56
-
-
77952967431
-
Direct detection of DNA methylation during single-molecule, real-time sequencing
-
Flusberg BA, Webster DR, Lee JH et al. Direct detection of DNA methylation during single-molecule, real-time sequencing. Nat. Methods 7, 461-465 (2010)
-
(2010)
Nat. Methods
, vol.7
, pp. 461-465
-
-
Flusberg, B.A.1
Webster, D.R.2
Lee, J.H.3
-
57
-
-
37548999369
-
Computational epigenetics
-
Bock C, Lengauer T. Computational epigenetics. Bioinformatics 24, 1-10 (2008)
-
(2008)
Bioinformatics
, vol.24
, pp. 1-10
-
-
Bock, C.1
Lengauer, T.2
-
58
-
-
76349113184
-
Epigenetic biomarker development
-
Bock C. Epigenetic biomarker development. Epigenomics 1, 99-110 (2009)
-
(2009)
Epigenomics
, vol.1
, pp. 99-110
-
-
Bock, C.1
-
59
-
-
0036856355
-
MethPrimer: Designing primers for methylation PCRs
-
Li LC, Dahiya R. MethPrimer: designing primers for methylation PCRs. Bioinformatics 18, 1427-1431 (2002) (Pubitemid 35414532)
-
(2002)
Bioinformatics
, vol.18
, Issue.11
, pp. 1427-1431
-
-
Li, L.-C.1
Dahiya, R.2
-
60
-
-
19744383664
-
BiSearch: Primer-design and search tool for PCR on bisulfite-treated genomes
-
Tusnády GE, Simon I, Váradi A, Arányi T. BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes. Nucl. Acids Res. 33, E9 (2005)
-
(2005)
Nucl. Acids Res.
, vol.33
-
-
Tusnády, G.E.1
Simon, I.2
Váradi, A.3
Arányi, T.4
-
61
-
-
75349090090
-
MethMarker: User-friendly design and optimization of gene-specific DNA methylation assays
-
Schuffler P, Mikeska T, Waha A, Lengauer T, Bock C. MethMarker: user-friendly design and optimization of gene-specific DNA methylation assays. Genome Biol. 10, R105 (2009)
-
(2009)
Genome Biol
, vol.10
-
-
Schuffler, P.1
Mikeska, T.2
Waha, A.3
Lengauer, T.4
Bock, C.5
-
62
-
-
27744577751
-
BiQ Analyzer: Visualization and quality control for DNA methylation data from bisulfite sequencing
-
DOI 10.1093/bioinformatics/bti652
-
Bock C, Reither S, Mikeska T et al. BiQ analyzer: visualization and quality control for DNA methylation data from bisulphite sequencing. Bioinformatics 21, 4067-4068 (2005) (Pubitemid 41631851)
-
(2005)
Bioinformatics
, vol.21
, Issue.21
, pp. 4067-4068
-
-
Bock, C.1
Reither, S.2
Mikeska, T.3
Paulsen, M.4
Walter, J.5
Lengauer, T.6
-
63
-
-
48449097251
-
QUMA: Quantification tool for methylation analysis
-
Kumaki Y, Oda M, Okano M. QUMA: quantification tool for methylation analysis. Nucl. Acids Res. 36, W170-W175 (2008)
-
(2008)
Nucl. Acids Res.
, vol.36
-
-
Kumaki, Y.1
Oda, M.2
Okano, M.3
-
64
-
-
79960012671
-
BiQ analyzer HT: Locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucl
-
Lutsik P, Feuerbach L, Arand J et al. BiQ analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucl. Acids Res. 39, W551-W556 (2011)
-
(2011)
Acids Res
, vol.39
-
-
Lutsik, P.1
Feuerbach, L.2
Arand, J.3
-
65
-
-
69949164229
-
A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry
-
Thompson RF, Suzuki M, Lau KW, Greally JM. A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry. Bioinformatics 25, 2164-2170 (2009)
-
(2009)
Bioinformatics
, vol.25
, pp. 2164-2170
-
-
Thompson, R.F.1
Suzuki, M.2
Lau, K.W.3
Greally, J.M.4
-
66
-
-
77649274178
-
Methyl-typing: An improved and visualized COBRA software for epigenomic studies
-
Yang CH, Chuang LY, Cheng YH et al. Methyl-typing: an improved and visualized COBRA software for epigenomic studies. FEBS Lett. 584, 739-744 (2010)
-
(2010)
FEBS Lett.
, vol.584
, pp. 739-744
-
-
Yang, C.H.1
Chuang, L.Y.2
Cheng, Y.H.3
-
68
-
-
0037099602
-
A hereditary nonpolyposis colorectal carcinoma case associated with hypermethylation of the MLH1 gene in normal tissue and loss of heterozygosity of the unmethylated allele in the resulting microsatellite instability-high tumor
-
Gazzoli I, Loda M, Garber J, Syngal S, Kolodner RD. A hereditary nonpolyposis colorectal carcinoma case associated with hypermethylation of the MLH1 gene in normal tissue and loss of heterozygosity of the unmethylated allele in the resulting microsatellite instability-high tumor. Cancer Res. 62, 3925-3928 (2002) (Pubitemid 34791053)
-
(2002)
Cancer Research
, vol.62
, Issue.14
, pp. 3925-3928
-
-
Gazzoli, I.1
Loda, M.2
Garber, J.3
Syngal, S.4
Kolodner, R.D.5
-
69
-
-
44849114690
-
BRCA1 promoter methylation in peripheral blood DNA of mutation negative familial breast cancer patients with a BRCA1 tumour phenotype
-
Snell C, Krypuy M, Wong EM et al. BRCA1 promoter methylation in peripheral blood DNA of mutation negative familial breast cancer patients with a BRCA1 tumour phenotype. Breast Cancer Res. 10, R12 (2008)
-
(2008)
Breast Cancer Res.
, vol.10
-
-
Snell, C.1
Krypuy, M.2
Wong, E.M.3
-
70
-
-
78650803552
-
Constitutional methylation of the BRCA1 promoter is specifically associated with BRCA1 mutation-associated pathology in early-onset breast cancer
-
Wong EM, Southey MC, Fox SB et al. Constitutional methylation of the BRCA1 promoter is specifically associated with BRCA1 mutation-associated pathology in early-onset breast cancer. Cancer Prev. Res. 4, 23-33 (2011)
-
(2011)
Cancer Prev. Res
, vol.4
, pp. 23-33
-
-
Wong, E.M.1
Southey, M.C.2
Fox, S.B.3
-
71
-
-
67650077151
-
Circulating methylated SEPT9 DNA in plasma is a biomarker for colorectal cancer
-
deVos T, Tetzner R, Model F et al. Circulating methylated SEPT9 DNA in plasma is a biomarker for colorectal cancer. Clin. Chem. 55, 1337-1346 (2009)
-
(2009)
Clin. Chem.
, vol.55
, pp. 1337-1346
-
-
Devos, T.1
Tetzner, R.2
Model, F.3
-
72
-
-
77949387215
-
Performance of epigenetic markers SEPT9 and ALX4 in plasma for detection of colorectal precancerous lesions
-
Tanzer M, Balluff B, Distler J et al. Performance of epigenetic markers SEPT9 and ALX4 in plasma for detection of colorectal precancerous lesions. PLoS One 5, E9061 (2010)
-
(2010)
PLoS One
, vol.5
-
-
Tanzer, M.1
Balluff, B.2
Distler, J.3
-
73
-
-
83355163991
-
Septin 9 methylated DNA is a sensitive and specific blood test for colorectal cancer
-
Warren JD, Xiong W, Bunker AM et al. Septin 9 methylated DNA is a sensitive and specific blood test for colorectal cancer. BMC Med. Genet. 9, 133 (2011)
-
(2011)
BMC Med. Genet
, vol.9
, pp. 133
-
-
Warren, J.D.1
Xiong, W.2
Bunker, A.M.3
-
74
-
-
23244439221
-
Detection in fecal DNA of colon cancer-specific methylation of the nonexpressed vimentin gene
-
DOI 10.1093/jnci/dji204
-
Chen WD, Han ZJ, Skoletsky J et al. Detection in fecal DNA of colon cancer-specific methylation of the nonexpressed vimentin gene. J. Natl Cancer Inst. 97, 1124-1132 (2005) (Pubitemid 41511211)
-
(2005)
Journal of the National Cancer Institute
, vol.97
, Issue.15
, pp. 1124-1132
-
-
Chen, W.-D.1
Han, Z.J.2
Skoletsky, J.3
Olson, J.4
Sah, J.5
Myeroff, L.6
Platzer, P.7
Lu, S.8
Dawson, D.9
Willis, J.10
Pretlow, T.P.11
Lutterbaugh, J.12
Kasturi, L.13
Willson, J.K.V.14
Rao, J.S.15
Shuber, A.16
Markowitz, S.D.17
-
75
-
-
55349115380
-
A simplified, noninvasive stool DNA test for colorectal cancer detection
-
Itzkowitz S, Brand R, Jandorf L et al. A simplified, noninvasive stool DNA test for colorectal cancer detection. Am. J. Gastroenterol. 103, 2862-2870 (2008)
-
(2008)
Am. J. Gastroenterol.
, vol.103
, pp. 2862-2870
-
-
Itzkowitz, S.1
Brand, R.2
Jandorf, L.3
-
76
-
-
84856391668
-
Quantification of methylated markers with a multiplex methylation-specific technology
-
Zou H, Allawi H, Cao X et al. Quantification of methylated markers with a multiplex methylation-specific technology. Clin. Chem. 58(2), 375-383 (2011)
-
(2011)
Clin. Chem.
, vol.58
, Issue.2
, pp. 375-383
-
-
Zou, H.1
Allawi, H.2
Cao, X.3
-
77
-
-
0029011539
-
5' CpG island methylation is associated with transcriptional silencing of the tumour suppressor p16/CDKN2/MTS1 in human cancers
-
Merlo A, Herman JG, Mao L et al. 5' CpG island methylation is associated with transcriptional silencing of the tumour suppressor p16/CDKN2/MTS1 in human cancers. Nat. Med. 1, 686-692 (1995)
-
(1995)
Nat Med.
, vol.1
, pp. 686-692
-
-
Merlo, A.1
Herman, J.G.2
Mao, L.3
-
78
-
-
67650164499
-
Concomitant promoter methylation of multiple genes in lung adenocarcinomas from current, former and never smokers
-
Tessema M, Yu YY, Stidley CA et al. Concomitant promoter methylation of multiple genes in lung adenocarcinomas from current, former and never smokers. Carcinogenesis 30, 1132-1138 (2009)
-
(2009)
Carcinogenesis
, vol.30
, pp. 1132-1138
-
-
Tessema, M.1
Yu, Y.Y.2
Stidley, C.A.3
-
79
-
-
83255181725
-
Cigarette smoking and p16 gene promoter hypermethylation in non-small cell lung carcinoma patients: A meta-analysis
-
Zhang B, Zhu W, Yang P et al. Cigarette smoking and p16 gene promoter hypermethylation in non-small cell lung carcinoma patients: a meta-analysis. PLoS One 6, E28882 (2011)
-
(2011)
PLoS One
, vol.6
-
-
Zhang, B.1
Zhu, W.2
Yang, P.3
-
80
-
-
0034326238
-
Predicting lung cancer by detecting aberrant promoter methylation in sputuma
-
Palmisano WA, Divine KK, Saccomanno G et al. Predicting lung cancer by detecting aberrant promoter methylation in sputum. Cancer Res. 60, 5954-5958 (2000)
-
(2000)
Cancer Res
, vol.60
, pp. 5954-5958
-
-
Palmisano, W.A.1
Divine, K.K.2
Saccomanno, G.3
-
81
-
-
0034666334
-
Differential frequencies of p16(INK4a) promoter hypermethylation, p53 mutation, and K-ras mutation in exfoliative material mark the development of lung cancer in symptomatic chronic smokers
-
Kersting M, Friedl C, Kraus A et al. Differential frequencies of p16 INK4a promoter hypermethylation, p53 mutation, and K-ras mutation in exfoliative material mark the development of lung cancer in symptomatic chronic smokers. J. Clin. Oncol. 18, 3221-3229 (2000)
-
(2000)
J. Clin. Oncol.
, vol.18
, pp. 3221-3229
-
-
Kersting, M.1
Friedl, C.2
Kraus, A.3
-
82
-
-
1842426642
-
Detection of promoter hypermethylation of multiple genes in the tumor and bronchoalveolar lavage of patients with lung cancer
-
DOI 10.1158/1078-0432.CCR-1111-3
-
Topaloglu O, Hoque MO, Tokumaru Y et al. Detection of promoter hypermethylation of multiple genes in the tumor and bronchoalveolar lavage of patients with lung cancer. Clin. Cancer Res. 10, 2284-2288 (2004) (Pubitemid 38445685)
-
(2004)
Clinical Cancer Research
, vol.10
, Issue.7
, pp. 2284-2288
-
-
Topaloglu, O.1
Hoque, M.O.2
Tokumaru, Y.3
Lee, J.4
Ratovitski, E.5
Sidransky, D.6
Moon, C.-S.7
-
83
-
-
19944433956
-
Identification of epigenetic aberrant promoter methylation in serum DNA is useful for early detection of lung cancer
-
Fujiwara K, Fujimoto N, Tabata M et al. Identification of epigenetic aberrant promoter methylation in serum DNA is useful for early detection of lung cancer. Clin. Cancer Res. 11, 1219-1225 (2005) (Pubitemid 40175774)
-
(2005)
Clinical Cancer Research
, vol.11
, Issue.3
, pp. 1219-1225
-
-
Fujiwara, K.1
Fujimoto, N.2
Tabata, M.3
Nishii, K.4
Matsuo, K.5
Hotta, K.6
Kozuki, T.7
Aoe, M.8
Kiura, K.9
Ueoka, H.10
Tanimoto, M.11
-
84
-
-
25144438960
-
Gene promoter methylation in plasma and sputum increases with lung cancer risk
-
DOI 10.1158/1078-0432.CCR-05-0625
-
Belinsky SA, Klinge DM, Dekker JD et al. Gene promoter methylation in plasma and sputum increases with lung cancer risk. Clin. Cancer Res. 11, 6505-6511 (2005) (Pubitemid 41338988)
-
(2005)
Clinical Cancer Research
, vol.11
, Issue.18
, pp. 6505-6511
-
-
Belinsky, S.A.1
Klinge, D.M.2
Dekker, J.D.3
Smith, M.W.4
Bocklage, T.J.5
Gilliland, F.D.6
Crowell, R.E.7
Karp, D.D.8
Stidley, C.A.9
Picchi, M.A.10
-
85
-
-
78049345913
-
SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer based on bronchial aspirates
-
Schmidt B, Liebenberg V, Dietrich D et al. SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer based on bronchial aspirates. BMC Cancer 10, 600 (2010)
-
(2010)
BMC Cancer
, vol.10
, pp. 600
-
-
Schmidt, B.1
Liebenberg, V.2
Dietrich, D.3
-
86
-
-
79953072405
-
Correlation of SHOX2 gene amplification and DNA methylation in lung cancer tumors
-
Schneider KU, Dietrich D, Fleischhacker M et al. Correlation of SHOX2 gene amplification and DNA methylation in lung cancer tumors. BMC Cancer 11, 102 (2011)
-
(2011)
BMC Cancer
, vol.11
, pp. 102
-
-
Schneider, K.U.1
Dietrich, D.2
Fleischhacker, M.3
-
87
-
-
80052967970
-
SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer in plasma
-
Kneip C, Schmidt B, Seegebarth A et al. SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer in plasma. J. Thorac. Oncol. 6, 1632-1638 (2011)
-
(2011)
J. Thorac. Oncol.
, vol.6
, pp. 1632-1638
-
-
Kneip, C.1
Schmidt, B.2
Seegebarth, A.3
-
88
-
-
0041924823
-
Hypermethylation of the human glutathione S-transferase-π gene (GSTP1) CpG island is present in a subset of proliferative inflammatory atrophy lesions but not in normal or hyperplastic epithelium of the prostate: A detailed study using laser-capture microdissection
-
Nakayama M, Bennett CJ, Hicks JL et al. Hypermethylation of the human glutathione S-transferase-pi gene (GSTP1) CpG island is present in a subset of proliferative inflammatory atrophy lesions but not in normal or hyperplastic epithelium of the prostate: a detailed study using laser-capture. Am. J. Pathol. 163, 923-933 (2003) (Pubitemid 37040128)
-
(2003)
American Journal of Pathology
, vol.163
, Issue.3
, pp. 923-933
-
-
Nakayama, M.1
Bennett, C.J.2
Hicks, J.L.3
Epstein, J.I.4
Platz, E.A.5
Nelson, W.G.6
De Marzo, A.M.7
-
89
-
-
77951939167
-
Evidence of heavy methylation in the galectin 3 promoter in early stages of prostate adenocarcinoma: Development and validation of a methylated marker for early diagnosis of prostate cancer
-
Ahmed H, Cappello F, Rodolico V, Vasta GR. Evidence of heavy methylation in the galectin 3 promoter in early stages of prostate adenocarcinoma: development and validation of a methylated marker for early diagnosis of prostate cancer. Transl. Oncol. 2, 146-156 (2009)
-
(2009)
Transl. Oncol.
, vol.2
, pp. 146-156
-
-
Ahmed, H.1
Cappello, F.2
Rodolico, V.3
Vasta, G.R.4
-
90
-
-
0034327356
-
Fluorescent methylation-specific polymerase chain reaction for DNA-based detection of prostate cancer in bodily fluids
-
Goessl C, Krause H, Muller M et al. Fluorescent methylation-specific polymerase chain reaction for DNA-based detection of prostate cancer in bodily fluids. Cancer Res. 60, 5941-5945 (2000)
-
(2000)
Cancer Res.
, vol.60
, pp. 5941-5945
-
-
Goessl, C.1
Krause, H.2
Muller, M.3
-
91
-
-
0034872916
-
DNA-based detection of prostate cancer in urine after prostatic massage
-
DOI 10.1016/S0090-4295(01)01268-7, PII S0090429501012687
-
Goessl C, Muller M, Heicappell R et al. DNA-based detection of prostate cancer in urine after prostatic massage. Urology 58, 335-338 (2001) (Pubitemid 32816344)
-
(2001)
Urology
, vol.58
, Issue.3
, pp. 335-338
-
-
Goessl, C.1
Muller, M.2
Heicappell, R.3
Krause, H.4
Straub, B.5
Schrader, M.6
Miller, K.7
-
92
-
-
51649095103
-
DNA hypermethylation of PITX2 is a marker of poor prognosis in untreated lymph node-negative hormone receptor-positive breast cancer patients
-
Nimmrich I, Sieuwerts AM, Meijer-van Gelder ME et al. DNA hypermethylation of PITX2 is a marker of poor prognosis in untreated lymph node-negative hormone receptor-positive breast cancer patients. Breast Cancer Res. Treat. 111, 429-437 (2008)
-
(2008)
Breast Cancer Res. Treat.
, vol.111
, pp. 429-437
-
-
Nimmrich, I.1
Sieuwerts, A.M.2
Meijer-Van Gelder, M.E.3
-
93
-
-
34447262607
-
DNA-methylation of the homeodomain transcription factor PITX2 reliably predicts risk of distant disease recurrence in tamoxifen-treated, node-negative breast cancer patients - Technical and clinical validation in a multi-centre setting in collaboration with the European Organisation for Research and Treatment of Cancer (EORTC) PathoBiology group
-
DOI 10.1016/j.ejca.2007.04.025, PII S0959804907003541
-
Maier S, Nimmrich I, Koenig T et al. DNA-methylation of the homeodomain transcription factor PITX2 reliably predicts risk of distant disease recurrence in tamoxifen-treated, node-negative breast cancer patients - technical and clinical validation in a multi-centre setting in collaboration with the European Organisation for Research and Treatment of Cancer EORTC PathoBiology group.Eur. J. Cancer 43, 1679-1686 (2007) (Pubitemid 47042374)
-
(2007)
European Journal of Cancer
, vol.43
, Issue.11
, pp. 1679-1686
-
-
Maier, S.1
Nimmrich, I.2
Koenig, T.3
Eppenberger-Castori, S.4
Bohlmann, I.5
Paradiso, A.6
Spyratos, F.7
Thomssen, C.8
Mueller, V.9
Nahrig, J.10
Schittulli, F.11
Kates, R.12
Lesche, R.13
Schwope, I.14
Kluth, A.15
Marx, A.16
Martens, J.W.M.17
Foekens, J.A.18
Schmitt, M.19
Harbeck, N.20
more..
-
94
-
-
55549136409
-
Multicenter study using paraffin-embedded tumor tissue testing PITX2 DNA methylation as a marker for outcome prediction in tamoxifen-treated, node-negative breast cancer patients
-
Harbeck N, Nimmrich I, Hartmann A et al. Multicenter study using paraffin-embedded tumor tissue testing PITX2 DNA methylation as a marker for outcome prediction in tamoxifen-treated, node-negative breast cancer patients. J. Clin. Oncol. 26, 5036-5042 (2008)
-
(2008)
J. Clin. Oncol.
, vol.26
, pp. 5036-5042
-
-
Harbeck, N.1
Nimmrich, I.2
Hartmann, A.3
-
95
-
-
58849143465
-
DNA methylation markers predict outcome in node-positive, estrogen receptor-positive breast cancer with adjuvant anthracycline-based chemotherapy
-
Hartmann O, Spyratos F, Harbeck N et al. DNA methylation markers predict outcome in node-positive, estrogen receptor-positive breast cancer with adjuvant anthracycline-based chemotherapy. Clin. Cancer Res. 15, 315-323 (2009)
-
(2009)
Clin. Cancer Res.
, vol.15
, pp. 315-323
-
-
Hartmann, O.1
Spyratos, F.2
Harbeck, N.3
-
96
-
-
62349136443
-
DNA methylation of the PITX2 gene promoter region is a strong independent prognostic marker of biochemical recurrence in patients with prostate cancer after radical prostatectomy
-
Weiss G, Cottrell S, Distler J et al. DNA methylation of the PITX2 gene promoter region is a strong independent prognostic marker of biochemical recurrence in patients with prostate cancer after radical prostatectomy. J. Urol. 181, 1678-1685 (2009)
-
(2009)
J. Urol.
, vol.181
, pp. 1678-1685
-
-
Weiss, G.1
Cottrell, S.2
Distler, J.3
-
97
-
-
77953123406
-
Multicenter clinical validation of PITX2 methylation as a prostate specific antigen recurrence predictor in patients with post-radical prostatectomy prostate cancer
-
Banez LL, Sun L, van Leenders GJ et al. Multicenter clinical validation of PITX2 methylation as a prostate specific antigen recurrence predictor in patients with post-radical prostatectomy prostate cancer. J. Urol. 184, 149-156 (2010)
-
(2010)
J. Urol.
, vol.184
, pp. 149-156
-
-
Banez, L.L.1
Sun, L.2
Van Leenders, G.J.3
-
98
-
-
40849124009
-
DNA methylation markers and early recurrence in stage I lung cancer
-
DOI 10.1056/NEJMoa0706550
-
Brock MV, Hooker CM, Ota-Machida E et al. DNA methylation markers and early recurrence in stage I lung cancer. N. Engl. J. Med. 358, 1118-1128 (2008) (Pubitemid 351398486)
-
(2008)
New England Journal of Medicine
, vol.358
, Issue.11
, pp. 1118-1128
-
-
Brock, M.V.1
Hooker, C.M.2
Ota-Machida, E.3
Han, Y.4
Guo, M.5
Ames, S.6
Glockner, S.7
Piantadosi, S.8
Gabrielson, E.9
Pridham, G.10
Pelosky, K.11
Belinsky, S.A.12
Yang, S.C.13
Baylin, S.B.14
Herman, J.G.15
-
99
-
-
84655163371
-
Combination epigenetic therapy has efficiacy in patients with refractory advanced non-small cell lung cancer
-
Juergens RA, Wrangle J, Vendetti FP et al. Combination epigenetic therapy has efficiacy in patients with refractory advanced non-small cell lung cancer. Cancer Discov. 1, 598-607 (2011)
-
(2011)
Cancer Discov.
, vol.1
, pp. 598-607
-
-
Juergens, R.A.1
Wrangle, J.2
Vendetti, F.P.3
-
100
-
-
61549089987
-
Pharmaco(epi)genomics in ovarian cancer
-
Paige AJW, Brown R. Pharmaco epigenomics in ovarian cancer. Pharmacogenomics 9, 1825-1834 (2008)
-
(2008)
Pharmacogenomics
, vol.9
, pp. 1825-1834
-
-
Paige, A.J.W.1
Brown, R.2
-
101
-
-
34548668191
-
Optimal primer design using the novel primer design program: MSPprimer provides accurate methylation analysis of the ATM promoter
-
DOI 10.1038/sj.onc.1210433, PII 1210433
-
Brandes JC, Carraway H, Herman JG. Optimal primer design using the novel primer design program: MSPprimer provides accurate methylation analysis of the ATM promoter. Oncogene 26, 6229-6237 (2007) (Pubitemid 47414370)
-
(2007)
Oncogene
, vol.26
, Issue.42
, pp. 6229-6237
-
-
Brandes, J.C.1
Carraway, H.2
Herman, J.G.3
-
102
-
-
0034626988
-
Inactivation of the DNA-repair gene MGMT and the clinical response of gliomas to alkylating agents
-
Esteller M, Garcia-Foncillas J, Andion E et al. Inactivation of the DNA-repair gene MGMT and the clinical response of gliomas to alkylating agents. N. Engl. J. Med. 343, 1350-1354 (2000)
-
(2000)
N. Engl. J. Med.
, vol.343
, pp. 1350-1354
-
-
Esteller, M.1
Garcia-Foncillas, J.2
Andion, E.3
-
103
-
-
0037005988
-
Hypermethylation of the DNA repair gene O(6)-methylguanine DNA methyltransferase and survival of patients with diffuse large B-cell lymphoma
-
Esteller M, Gaidano G, Goodman SN et al. Hypermethylation of the DNA repair gene O 6-methylguanine DNA methyltransferase and survival of patients with diffuse large B-cell lymphoma. J. Natl Cancer Inst. 94, 26-32 (2002)
-
(2002)
J. Natl Cancer Inst.
, vol.94
, pp. 26-32
-
-
Esteller, M.1
Gaidano, G.2
Goodman, S.N.3
-
104
-
-
78349279248
-
The use of temozolomide for the treatment of malignant tumors: Clinical evidence and molecular mechanisms of action
-
Bei R, Marzocchella L, Turriziani M. The use of temozolomide for the treatment of malignant tumors: clinical evidence and molecular mechanisms of action. Recent Pat. Anticancer Drug Discov. 5, 172-187 (2010)
-
(2010)
Recent Pat. Anticancer Drug Discov.
, vol.5
, pp. 172-187
-
-
Bei, R.1
Marzocchella, L.2
Turriziani, M.3
-
105
-
-
34548147443
-
Optimization of quantitative MGMT promoter methylation analysis using pyrosequencing and combined bisulfite restriction analysis
-
DOI 10.2353/jmoldx.2007.060167
-
Mikeska T, Bock C, El-Maarri O et al. Optimization of quantitative MGMT promoter methylation analysis using pyrosequencing and combined bisulfite restriction analysis. J. Mol. Diagn. 9, 368-381 (2007) (Pubitemid 47305073)
-
(2007)
Journal of Molecular Diagnostics
, vol.9
, Issue.3
, pp. 368-381
-
-
Mikeska, T.1
Bock, C.2
El-Maarri, O.3
Hubner, A.4
Ehrentraut, D.5
Schramm, J.6
Felsberg, J.7
Kahl, P.8
Buttner, R.9
Pietsch, T.10
Waha, A.11
-
106
-
-
47649131468
-
6-methylguanine-DNA methyltransferase gene promoter methylation in glioma
-
DOI 10.2353/jmoldx.2008.070169
-
Vlassenbroeck I, Califice S, Diserens AC et al. Validation of real-time methylation-specific PCR to determine O6-methylguanine-DNA methyltransferase gene promoter methylation in glioma. J. Mol. Diagn. 10, 332-337 (2008) (Pubitemid 352019119)
-
(2008)
Journal of Molecular Diagnostics
, vol.10
, Issue.4
, pp. 332-337
-
-
Vlassenbroeck, I.1
Califice, S.2
Diserens, A.-C.3
Migliavacca, E.4
Straub, J.5
Di Stefano, I.6
Moreau, F.7
Hamou, M.-F.8
Renard, I.9
Delorenzi, M.10
Flamion, B.11
DiGuiseppi, J.12
Bierau, K.13
Hegi, M.E.14
-
107
-
-
80052738668
-
Primer extension based quantitative polymerase chain reaction reveals consistent differences in the methylation status of the MGMT promoter in diffusely infiltrating gliomas (WHO grade II-IV) of adults
-
Vassella E, Vajtai I, Bandi N et al. Primer extension based quantitative polymerase chain reaction reveals consistent differences in the methylation status of the MGMT promoter in diffusely infiltrating gliomas WHO grade II-IV of adults. J. Neurooncol. 104, 293-303 (2011)
-
(2011)
J. Neurooncol.
, vol.104
, pp. 293-303
-
-
Vassella, E.1
Vajtai, I.2
Bandi, N.3
-
108
-
-
65349187055
-
Cancer epigenomics: Implications of DNA methylation in personalized cancer therapy
-
Toyota M, Suzuki H, Yamashita T et al. Cancer epigenomics: implications of DNA methylation in personalized cancer therapy. Cancer Sci. 100, 787-791 (2009)
-
(2009)
Cancer Sci.
, vol.100
, pp. 787-791
-
-
Toyota, M.1
Suzuki, H.2
Yamashita, T.3
-
109
-
-
33745056414
-
Epigenetic inactivation of the premature aging Werner syndrome gene in human cancer
-
DOI 10.1073/pnas.0600645103
-
Agrelo R, Cheng WH, Setien F et al. Epigenetic inactivation of the premature aging Werner syndrome gene in human cancer. Proc. Natl Acad. Sci. USA 103, 8822-8827 (2006) (Pubitemid 43878103)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.23
, pp. 8822-8827
-
-
Agrelo, R.1
Cheng, W.-H.2
Setien, F.3
Ropero, S.4
Espada, J.5
Fraga, M.F.6
Herranz, M.7
Paz, M.F.8
Sanchez-Cespedes, M.9
Artiga, M.J.10
Guerrero, D.11
Castells, A.12
Von Kobbe, C.13
Bohr, V.A.14
Esteller, M.15
-
110
-
-
33645658128
-
Irinotecan inactivation is modulated by epigenetic silencing of UGT1A1 in colon cancer
-
Gagnon JF, Bernard O, Villeneuve L, Tetu B, Guillemette C. Irinotecan inactivation is modulated by epigenetic silencing of UGT1A1 in colon cancer. Clin. Cancer Res. 12, 1850-1858 (2006)
-
(2006)
Clin. Cancer Res.
, vol.12
, pp. 1850-1858
-
-
Gagnon, J.F.1
Bernard, O.2
Villeneuve, L.3
Tetu, B.4
Guillemette, C.5
-
111
-
-
17244373777
-
Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy
-
DOI 10.1038/nature03445
-
Farmer H, McCabe N, Lord CJ et al. Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy. Nature 434, 917-921 (2005) (Pubitemid 40559006)
-
(2005)
Nature
, vol.434
, Issue.7035
, pp. 917-921
-
-
Farmer, H.1
McCabe, H.2
Lord, C.J.3
Tutt, A.H.J.4
Johnson, D.A.5
Richardson, T.B.6
Santarosa, M.7
Dillon, K.J.8
Hickson, I.9
Knights, C.10
Martin, N.M.B.11
Jackson, S.P.12
Smith, G.C.M.13
Ashworth, A.14
-
112
-
-
78751629661
-
BRCA1 CpG island hypermethylation predicts sensitivity to poly(adenosine diphosphate)-ribose polymerase inhibitors
-
Veeck J, Ropero S, Setien F et al. BRCA1 CpG island hypermethylation predicts sensitivity to poly(adenosine diphosphate)-ribose polymerase inhibitors. J. Clin. Oncol. 28, E563-E564 (2010)
-
(2010)
J. Clin. Oncol.
, vol.28
-
-
Veeck, J.1
Ropero, S.2
Setien, F.3
-
113
-
-
0038075462
-
Disruption of the Fanconi anemia-BRCA pathway in cisplatin-sensitive ovarian tumors
-
DOI 10.1038/nm852
-
Taniguchi T, Tischkowitz M, Ameziane N et al. Disruption of the Fanconi anemia-BRCA pathway in cisplatin-sensitive ovarian tumors. Nat. Med. 9, 568-574 (2003) (Pubitemid 36597103)
-
(2003)
Nature Medicine
, vol.9
, Issue.5
, pp. 568-574
-
-
Taniguchi, T.1
Tischkowitz, M.2
Ameziane, N.3
Hodgson, S.V.4
Mathew, C.G.5
Joenje, H.6
Mok, S.C.7
D'Andrea, A.D.8
-
114
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
The Cancer Genome Atlas Research Network
-
The Cancer Genome Atlas Research Network. Integrated genomic analyses of ovarian carcinoma. Nature 474, 609-615 (2011)
-
(2011)
Nature
, vol.474
, pp. 609-615
-
-
-
115
-
-
9144239265
-
Epigenetic inactivation of CHFR and sensitivity to microtubule inhibitors in gastric cancer
-
Satoh A, Toyota M, Itoh F et al. Epigenetic inactivation of CHFR and sensitivity to microtubule inhibitors in gastric cancer. Cancer Res. 63, 8606-8613 (2003) (Pubitemid 38064034)
-
(2003)
Cancer Research
, vol.63
, Issue.24
, pp. 8606-8613
-
-
Satoh, A.1
Toyota, M.2
Itoh, F.3
Sasaki, Y.4
Suzuki, H.5
Ogi, K.6
Kikuchi, T.7
Mita, H.8
Yamashita, T.9
Kojima, T.10
Kusano, M.11
Fujita, M.12
Hosokawa, M.13
Endo, T.14
Tokino, T.15
Imai, K.16
-
116
-
-
33645287282
-
The significance of aberrant CHFR methylation for clinical response to microtubule inhibitors in gastric cancer
-
Koga Y, Kitajima Y, Miyoshi A et al. The significance of aberrant CHFR methylation for clinical response to microtubule inhibitors in gastric cancer. J. Gastroenterol. 41, 133-139 (2006)
-
(2006)
J. Gastroenterol.
, vol.41
, pp. 133-139
-
-
Koga, Y.1
Kitajima, Y.2
Miyoshi, A.3
-
117
-
-
35848946152
-
Epigenetic inactivation of the CHFR gene in cervical cancer contributes to sensitivity to taxanes
-
Banno K, Yanokura M, Kawaguchi M et al. Epigenetic inactivation of the CHFR gene in cervical cancer contributes to sensitivity to taxanes. Int. J. Oncol. 31, 713-720 (2007)
-
(2007)
Int. J. Oncol.
, vol.31
, pp. 713-720
-
-
Banno, K.1
Yanokura, M.2
Kawaguchi, M.3
-
118
-
-
83055196863
-
CHFR suppression by hypermethylation sensitizes endometrial cancer cells to paclitaxel
-
Wang X, Yang Y, Xu C et al. CHFR suppression by hypermethylation sensitizes endometrial cancer cells to paclitaxel. Int. J. Gynecol. Cancer 21, 996-1003 (2011)
-
(2011)
Int. J. Gynecol. Cancer
, vol.21
, pp. 996-1003
-
-
Wang, X.1
Yang, Y.2
Xu, C.3
-
119
-
-
25144497990
-
Small interfering RNA-induced CHFR silencing sensitizes oral: Squamous cell cancer cells to microtubule inhibitors
-
Ogi K, Toyota M, Mita H et al. Small interfering RNA-induced CHFR silencing sensitizes oral squamous cell cancer cells to microtubule inhibitors. Cancer Biol. Ther. 4, 773-780 (2005) (Pubitemid 41351179)
-
(2005)
Cancer Biology and Therapy
, vol.4
, Issue.7
, pp. 773-780
-
-
Ogi, K.1
Toyota, M.2
Mita, H.3
Satoh, A.4
Kashima, L.5
Sasaki, Y.6
Suzuki, H.7
Akino, K.8
Nishikawa, N.9
Noguchi, M.10
Shinomura, Y.11
Imai, K.12
Hiratsuka, H.13
Tokino, T.14
-
120
-
-
32144440317
-
DNA methylation of CHFR is not a predictor of the response to docetaxel and paclitaxel in advanced and recurrent gastric cancer
-
Yoshida K, Hamai Y, Suzuki T et al. DNA methylation of CHFR is not a predictor of the response to docetaxel and paclitaxel in advanced and recurrent gastric cancer. Anticancer Res. 26, 49-54 (2006) (Pubitemid 43206059)
-
(2006)
Anticancer Research
, vol.26
, Issue.1 A
, pp. 49-54
-
-
Yoshida, K.1
Hamai, Y.2
Suzuki, T.3
Sanada, Y.4
Oue, N.5
Yasui, W.6
-
121
-
-
0034326784
-
Reversal of drug resistance in human tumor xenografts by 2'-deoxy-5-azacytidine-induced demethylation of the hMLH1 gene promoter
-
Plumb JA, Strathdee G, Sludden J, Kaye SB, Brown R. Reversal of drug resistance in human tumor xenografts by 2'-deoxy-5-azacytidine-induced demethylation of the hMLH1 gene promoter. Cancer Res. 60, 6039-6044 (2000)
-
(2000)
Cancer Res.
, vol.60
, pp. 6039-6044
-
-
Plumb, J.A.1
Strathdee, G.2
Sludden, J.3
Kaye, S.B.4
Brown, R.5
-
122
-
-
84867743287
-
Candidate DNA methylation drivers of acquired cisplatin resistance in ovarian cancer identified by methylome and expression profiling
-
doi:10.1038/onc.2011.611 (Epub ahead of print)
-
Zeller C, Dai W, Steele NL et al. Candidate DNA methylation drivers of acquired cisplatin resistance in ovarian cancer identified by methylome and expression profiling. Oncogene doi:10.1038/onc.2011.611 (2012) (Epub ahead of print)
-
(2012)
Oncogene
-
-
Zeller, C.1
Dai, W.2
Steele, N.L.3
-
123
-
-
0032993145
-
Mismatch repair proficiency and in vitro response to 5-fluorouracil
-
DOI 10.1016/S0016-5085(99)70558-5
-
Carethers JM, Chauhan DP, Fink D et al. Mismatch repair proficiency and in vitro response to 5-fluorouracil. Gastroenterology 117, 123-131 (1999) (Pubitemid 29297628)
-
(1999)
Gastroenterology
, vol.117
, Issue.1
, pp. 123-131
-
-
Carethers, J.M.1
Chauhan, D.P.2
Fink, D.3
Nebel, S.4
Bresalier, R.S.5
Howell, S.B.6
Boland, C.R.7
-
124
-
-
84860319366
-
Methylation of death-associated protein kinase is associated with cetuximab and erlotinib resistance
-
Ogawa T, Liggett TE, Melnikov AA et al. Methylation of death-associated protein kinase is associated with cetuximab and erlotinib resistance. Cell Cycle 11 (8), 1656-1663 (2012)
-
(2012)
Cell Cycle
, vol.11
, Issue.8
, pp. 1656-1663
-
-
Ogawa, T.1
Liggett, T.E.2
Melnikov, A.A.3
-
125
-
-
37049001640
-
Drug sensitivity prediction by CpG island methylation profile in the NCI-60 cancer cell line panel
-
DOI 10.1158/0008-5472.CAN-07-1502
-
Shen L, Kondo Y, Ahmed S et al. Drug sensitivity prediction by CpG island methylation profile in the NCI-60 cancer cell line panel. Cancer Res. 67, 11335-11343 (2007) (Pubitemid 350248560)
-
(2007)
Cancer Research
, vol.67
, Issue.23
, pp. 11335-11343
-
-
Shen, L.1
Kondo, Y.2
Ahmed, S.3
Boumber, Y.4
Konishi, K.5
Guo, Y.6
Chen, X.7
Vilaythong, J.N.8
Issa, J.-P.J.9
-
126
-
-
84855755065
-
TFAP2E-DKK4 and chemoresistance in colorectal cancer
-
Ebert MPA, Tanzer M, Balluff B et al. TFAP2E-DKK4 and chemoresistance in colorectal cancer. N. Engl. J. Med. 366, 44-53 (2012)
-
(2012)
N. Engl. J. Med.
, vol.366
, pp. 44-53
-
-
Ebert, M.P.A.1
Tanzer, M.2
Balluff, B.3
-
128
-
-
77449149371
-
DNA methylation predicts survival and response to therapy in patients with myelodysplastic syndromes
-
Shen L, Kantarjian H, Guo Yi et al. DNA methylation predicts survival and response to therapy in patients with myelodysplastic syndromes. J. Clin. Oncol. 28, 605-613 (2010)
-
(2010)
J. Clin. Oncol.
, vol.28
, pp. 605-613
-
-
Shen, L.1
Kantarjian, H.2
Y, I.G.3
-
129
-
-
33744918070
-
DNA methylation changes after 5-aza-2′-deoxycytidine therapy in patients with leukemia
-
DOI 10.1158/0008-5472.CAN-05-2385
-
Yang AS, Doshi KD, Choi SW et al. DNA methylation changes after 5-aza-2'-deoxycytidine therapy in patients with leukemia. Cancer Res. 66, 5495-5503 (2006) (Pubitemid 43844978)
-
(2006)
Cancer Research
, vol.66
, Issue.10
, pp. 5495-5503
-
-
Yang, A.S.1
Doshi, K.D.2
Choi, S.-W.3
Mason, J.B.4
Mannari, R.K.5
Gharybian, V.6
Luna, R.7
Rashid, A.8
Shen, L.9
Estecio, M.R.H.10
Kantarjian, H.M.11
Garcia-Manero, G.12
Issa, J.-P.J.13
-
130
-
-
54049147814
-
Azacytidine causes complex DNA methylation responses in myeloid leukemia
-
Stresemann C, Bokelmann I, Mahlknecht U, Lyko F. Azacytidine causes complex DNA methylation responses in myeloid leukemia. Mol. Cancer Ther. 7, 2998-3005 (2008)
-
(2008)
Mol. Cancer Ther.
, vol.7
, pp. 2998-3005
-
-
Stresemann, C.1
Bokelmann, I.2
Mahlknecht, U.3
Lyko, F.4
-
131
-
-
33947315736
-
Cancer epigenomics: DNA methylomes and histone-modification maps
-
DOI 10.1038/nrg2005, PII NRG2005
-
Esteller M. Cancer epigenomics: DNA methylomes and histone-modification maps. Nat. Rev. Genet. 8, 286-298 (2007) (Pubitemid 46439286)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.4
, pp. 286-298
-
-
Esteller, M.1
-
132
-
-
84856306090
-
Genome-wide DNA methylation profiling using Infinium® assay
-
Bibikova M, Le J, Barnes B et al. Genome-wide DNA methylation profiling using Infinium® assay. Epigenomics 1, 177-200 (2009)
-
(2009)
Epigenomics
, vol.1
, pp. 177-200
-
-
Bibikova, M.1
Le, J.2
Barnes, B.3
-
133
-
-
14644396228
-
Detection and interpretation of altered methylation patterns in cancer cells
-
DOI 10.1038/nrc1571
-
Ushijima T. Detection and interpretation of altered methylation patterns in cancer cells. Nat. Rev. Cancer 5, 223-231 (2005) (Pubitemid 40314953)
-
(2005)
Nature Reviews Cancer
, vol.5
, Issue.3
, pp. 223-231
-
-
Ushijima, T.1
-
134
-
-
68949149010
-
Identification of regions correlating MGMT promoter methylation and gene expression in glioblastomas
-
Everhard S, Tost J, El Abdalaoui H et al. Identification of regions correlating MGMT promoter methylation and gene expression in glioblastomas. Neuro. Oncol. 11, 348-356 (2009)
-
(2009)
Neuro. Oncol.
, vol.11
, pp. 348-356
-
-
Everhard, S.1
Tost, J.2
El Abdalaoui, H.3
-
135
-
-
0036310867
-
Analysis of complex methylation data
-
DOI 10.1016/S1046-2023(02)00071-3, PII S1046202302000713
-
Siegmund KD, Laird PW. Analysis of complex methylation data. Methods 27, 170-178 (2002) (Pubitemid 34757130)
-
(2002)
Methods
, vol.27
, Issue.2
, pp. 170-178
-
-
Siegmund, K.D.1
Laird, P.W.2
|