메뉴 건너뛰기




Volumn 3, Issue 6, 2011, Pages 771-784

Evaluation of the Infinium Methylation 450K technology

Author keywords

bisulfite based method; DNA methylation; DNA methylome; epigenetics; epigenomics; Infinium I; Infinium II; Infinium Methylation 450K; peak based correction

Indexed keywords

ARTICLE; BIOINFORMATICS; BREAST; CELL ASSAY; CELL LINE; CELL STRAIN HCT116; COMPUTER PROGRAM; DATA ANALYSIS SOFTWARE; EPIGENETICS; HUMAN; HUMAN CELL; INFINIUM I ASSAY; INFINIUM II ASSAY; METHYLATION; PRIORITY JOURNAL;

EID: 82455206314     PISSN: 17501911     EISSN: 1750192X     Source Type: Journal    
DOI: 10.2217/epi.11.105     Document Type: Article
Times cited : (465)

References (23)
  • 1
    • 34249275353 scopus 로고    scopus 로고
    • Phenotypic plasticity and the epigenetics of human disease
    • Feinberg AP. Phenotypic plasticity and the epigenetics of human disease. Nature 447, 433-440 (2007).
    • (2007) Nature , vol.447 , pp. 433-440
    • Feinberg, A.P.1
  • 2
    • 77649267695 scopus 로고    scopus 로고
    • Dynamic changes in the human methylome during differentiation
    • Laurent L, Wong E, Li G et al. Dynamic changes in the human methylome during differentiation. Genome Res. 20, 320-331 (2010).
    • (2010) Genome Res. , vol.20 , pp. 320-331
    • Laurent, L.1    Wong, E.2    Li, G.3
  • 3
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R, Pelizzola M, Dowen RH et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462, 315-322 (2009).
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3
  • 4
    • 31944432339 scopus 로고    scopus 로고
    • A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
    • USA
    • Saxonov S, Berg P, Brutlag DL. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc. Natl Acad. Sci. USA 103, 1412-1417 (2006).
    • (2006) Proc. Natl Acad. Sci. , vol.103 , pp. 1412-1417
    • Saxonov, S.1    Berg, P.2    Brutlag, D.L.3
  • 5
    • 2442684104 scopus 로고    scopus 로고
    • An evaluation of new criteria for CpG islands in the human genome as gene markers
    • Wang Y, Leung FC. An evaluation of new criteria for CpG islands in the human genome as gene markers. Bioinformatics 20, 1170-1177 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 1170-1177
    • Wang, Y.1    Leung, F.C.2
  • 6
    • 77957970301 scopus 로고    scopus 로고
    • Epigenetic modifications and human disease
    • Portela A, Esteller M. Epigenetic modifications and human disease. Nat. Biotechnol. 28, 1057-1068 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 1057-1068
    • Portela, A.1    Esteller, M.2
  • 7
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones PA, Baylin SB. The epigenomics of cancer. Cell 128, 683-692 (2007).
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 9
    • 77957965145 scopus 로고    scopus 로고
    • Epigenomics reveals a functional genome anatomy and a new approach to common disease
    • Feinberg AP. Epigenomics reveals a functional genome anatomy and a new approach to common disease. Nat. Biotechnol. 28, 1049-1052 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 1049-1052
    • Feinberg, A.P.1
  • 10
    • 79952118443 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiling wiley Interdiscip
    • Bibikova M, Fan JB. Genome-wide DNA methylation profiling. Wiley Interdiscip. Rev. Syst. Biol. Med. 2, 210-223 (2010).
    • (2010) Rev. Syst. Biol. Med. , vol.2 , pp. 210-223
    • Bibikova, M.1    Fan, J.B.2
  • 11
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genomewide DNA methylation analysis
    • Laird PW. Principles and challenges of genomewide DNA methylation analysis. Nat. Rev. Genet. 11, 191-203 (2010).
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 12
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9, 465-476 (2008).
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 13
    • 84856306090 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiling using Infinium assay
    • Bibikova M, Le J, Barnes B et al. Genome-wide DNA methylation profiling using Infinium assay. Epigenomics 1, 177-200 (2009).
    • (2009) Epigenomics , vol.1 , pp. 177-200
    • Bibikova, M.1    Le J Barnes, B.2
  • 14
    • 79958754527 scopus 로고    scopus 로고
    • Validation of a DNA methylation microarray for 450 000 CpG sites in the human genome
    • Sandoval J, Heyn HA, Moran S et al. Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome. Epigenetics 6, 692-702 (2011).
    • (2011) Epigenetics , vol.6 , pp. 692-702
    • Sandoval, J.1    Heyn, H.A.2    Moran, S.3
  • 15
    • 80053304450 scopus 로고    scopus 로고
    • High density DNA methylation array with single CpG site resolution
    • Bibikova M, Barnes B, Tsan C et al. High density DNA methylation array with single CpG site resolution. Genomics 98, 288-295 (2011).
    • (2011) Genomics , vol.98 , pp. 288-295
    • Bibikova, M.1    Barnes, B.2    Tsan, C.3
  • 16
    • 82455202257 scopus 로고    scopus 로고
    • DNA methylation profiling reveals a predominant immune component in breast cancers
    • doi:10.1002/ emmm.201100801 Epub ahead of print).
    • Dedeurwaerder S, Desmedt C, Calonne E et al. DNA methylation profiling reveals a predominant immune component in breast cancers. EMBO Mol. Med. doi:10.1002/ emmm.201100801 (2011) (Epub ahead of print).
    • (2011) EMBO Mol. Med.
    • Dedeurwaerder, S.1    Desmedt, C.2    Calonne, E.3
  • 17
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of b value and M value methods for quantifying methylation levels by microarray analysis
    • Du P, Zhang X, Huang CC et al. Comparison of b value and M value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics 11, 587 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 587
    • Du, P.1    Zhang, X.2    Huang, C.C.3
  • 19
    • 18344390653 scopus 로고    scopus 로고
    • DNMT1 and DNMT3b cooperate to silence genes in human cancer cells
    • Rhee I, Bachman KE, Park BH et al. DNMT1 and DNMT3b cooperate to silence genes in human cancer cells. Nature 416, 552-556 (2002).
    • (2002) Nature , vol.416 , pp. 552-556
    • Rhee, I.1    Bachman, K.E.2    Park, B.H.3
  • 20
    • 77956873627 scopus 로고    scopus 로고
    • Tackling the widespread and critical impact of batch effects in high-throughput data
    • Leek JT, Scharpf RB, Bravo HC et al. Tackling the widespread and critical impact of batch effects in high-throughput data. Nat. Rev. Genet. 11, 733-739 (2010).
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 733-739
    • Leek, J.T.1    Scharpf, R.B.2    Bravo, H.C.3
  • 21
    • 70450169678 scopus 로고    scopus 로고
    • Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns
    • Byun HM, Siegmund KD, Pan F et al. Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns. Hum. Mol. Genet. 18, 4808-4817 (2009).
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 4808-4817
    • Byun, H.M.1    Siegmund, K.D.2    Pan, F.3
  • 23
    • 79960556965 scopus 로고    scopus 로고
    • Epigenome-wide association studies for common human diseases
    • Rakyan VK, Down TA, Balding DJ, Beck S. Epigenome-wide association studies for common human diseases. Nat. Rev. Genet. 12, 529-541 (2011).
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 529-541
    • Rakyan, V.K.1    Down, T.A.2    Balding, D.J.3    Beck, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.