-
1
-
-
33847292797
-
An unmethylated 30 promoter-proximal region is required for efficient transcription initiation
-
Appanah R, Dickerson DR, Goyal P, Groudine M, Lorincz MC (2007) An unmethylated 30 promoter-proximal region is required for efficient transcription initiation. PLoS Genet 3(2): e27
-
(2007)
PLoS Genet
, vol.3
, Issue.2
-
-
Appanah, R.1
Dickerson, D.R.2
Goyal, P.3
Groudine, M.4
Lorincz, M.C.5
-
2
-
-
34548414620
-
Phase I and pharmacodynamic trial of the DNA methyltransferase inhibitor decitabine and carboplatin in solid tumors
-
DOI 10.1200/JCO.2007.10.8688
-
Appleton K, Mackay HJ, Judson I, Plumb JA, McCormick C, Strathdee G, Lee C, Barrett S, Reade S, Jadayel D, Tang A, Bellenger K, Mackay L, Setanoians A, Schatzlein A, Twelves C, Kaye SB, Brown R (2007) Phase I and pharmacodynamic trial of the DNA methyltransferase inhibitor decitabine and carboplatin in solid tumors. J Clin Oncol 25(29): 4603-4609 (Pubitemid 350035319)
-
(2007)
Journal of Clinical Oncology
, vol.25
, Issue.29
, pp. 4603-4609
-
-
Appleton, K.1
Mackay, H.J.2
Judson, I.3
Plumb, J.A.4
McCormick, C.5
Strathdee, G.6
Lee, C.7
Barrett, S.8
Reade, S.9
Jadayel, D.10
Tang, A.11
Bellenger, K.12
Mackay, L.13
Setanoians, A.14
Schatzlein, A.15
Twelves, C.16
Kaye, S.B.17
Brown, R.18
-
3
-
-
78751693154
-
Replication timingrelated and gene body-specific methylation of active human genes
-
Aran D, Toperoff G, Rosenberg M, Hellman A (2011) Replication timingrelated and gene body-specific methylation of active human genes. Hum Mol Genet 20: 670-680
-
(2011)
Hum Mol Genet
, vol.20
, pp. 670-680
-
-
Aran, D.1
Toperoff, G.2
Rosenberg, M.3
Hellman, A.4
-
4
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball MP, Li JB, Gao Y, Lee JH, LeProust EM, Park IH, Xie B, Daley GQ, Church GM (2009) Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat Biotechnol 27: 361-368
-
(2009)
Nat Biotechnol
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
Li, J.B.2
Gao, Y.3
Lee, J.H.4
Leproust, E.M.5
Park, I.H.6
Xie, B.7
Daley, G.Q.8
Church, G.M.9
-
5
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
Bird AP (1986) CpG-rich islands and the function of DNA methylation. Nature 321(6067): 209-213 (Pubitemid 16016411)
-
(1986)
Nature
, vol.321
, Issue.6067
, pp. 209-213
-
-
Bird, A.P.1
-
6
-
-
79951874562
-
Characterization of the contradictory chromatin signatures at the 30 exons of zinc finger genes
-
Blahnik KR, Dou L, Echipare L, Iyengar S, O'Geen H, Sanchez E, Zhao Y, Marra MA, Hirst M, Costello JF, Korf I, Farnham PJ (2011) Characterization of the contradictory chromatin signatures at the 30 exons of zinc finger genes. PLoS One 6(2): e17121
-
(2011)
PLoS One
, vol.6
, Issue.2
-
-
Blahnik, K.R.1
Dou, L.2
Echipare, L.3
Iyengar, S.4
O'Geen, H.5
Sanchez, E.6
Zhao, Y.7
Marra, M.A.8
Hirst, M.9
Costello, J.F.10
Korf, I.11
Farnham, P.J.12
-
7
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
DOI 10.1016/j.cell.2005.10.023, PII S0092867405011566
-
Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL (2005) Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123: 581-592 (Pubitemid 41608462)
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.-J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
-
8
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
Cedar H, Bergman Y (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet 10(5): 295-304
-
(2009)
Nat Rev Genet
, vol.10
, Issue.5
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
9
-
-
77954171220
-
Contrasting chromatin organization of CpG islands and exons in the human genome
-
Choi JK (2010) Contrasting chromatin organization of CpG islands and exons in the human genome. Genome Biol 11(7): R70
-
(2010)
Genome Biol
, vol.11
, Issue.7
-
-
Choi, J.K.1
-
10
-
-
76249090741
-
Nucleosome deposition and DNA methylation at coding region boundaries
-
Choi JK, Bae JB, Lyu J, Kim TY, Kim YJ (2009) Nucleosome deposition and DNA methylation at coding region boundaries. Genome Biol 10(9): R89
-
(2009)
Genome Biol
, vol.10
, Issue.9
-
-
Choi, J.K.1
Bae, J.B.2
Lyu, J.3
Kim, T.Y.4
Kim, Y.J.5
-
11
-
-
34250661469
-
DNA demethylating agents and histone deacetylase inhibitors in hematologic malignancies
-
Fandy TE, Carraway H, Gore SD (2007) DNA demethylating agents and histone deacetylase inhibitors in hematologic malignancies. Cancer J 13: 40-48
-
(2007)
Cancer J
, vol.13
, pp. 40-48
-
-
Fandy, T.E.1
Carraway, H.2
Gore, S.D.3
-
12
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE (2010) Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA 107(19): 8689-8694
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.19
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
Chen, P.Y.4
Bostick, M.5
Goll, M.G.6
Hetzel, J.7
Jain, J.8
Strauss, S.H.9
Halpern, M.E.10
Ukomadu, C.11
Sadler, K.C.12
Pradhan, S.13
Pellegrini, M.14
Jacobsen, S.E.15
-
13
-
-
84856409466
-
DNA methylation profiling to identify known and novel tumour subtypes
-
Watanabe HS (ed) Chapter II. Nova Science Publishers: New York
-
Flanagan JM (2011) DNA methylation profiling to identify known and novel tumour subtypes. In Horizons in Cancer Research, Watanabe HS (ed) Vol. 46, Chapter II. Nova Science Publishers: New York
-
(2011)
Horizons in Cancer Research
, vol.1
, pp. 46
-
-
Flanagan, J.M.1
-
14
-
-
63149135457
-
Gene-body hypermethylation of ATM in peripheral blood DNA of bilateral breast cancer patients
-
Flanagan JM, Munoz-Alegre M, Henderson S, Tang T, Sun P, Johnson N, Fletcher O, Dos Santos Silva I, Peto J, Boshoff C, Narod S, Petronis A (2009) Gene-body hypermethylation of ATM in peripheral blood DNA of bilateral breast cancer patients. Hum Mol Genet 18(7): 1332-1342
-
(2009)
Hum Mol Genet
, vol.18
, Issue.7
, pp. 1332-1342
-
-
Flanagan, J.M.1
Munoz-Alegre, M.2
Henderson, S.3
Tang, T.4
Sun, P.5
Johnson, N.6
Fletcher, O.7
Dos Santos Silva, I.8
Peto, J.9
Boshoff, C.10
Narod, S.11
Petronis, A.12
-
15
-
-
77949722647
-
Evaluation of a prediction protocol to identify potential targets of epigenetic reprogramming by the cancer associated Epstein Barr virus
-
Flower K, Hellen E, Newport MJ, Jones S, Sinclair AJ (2010) Evaluation of a prediction protocol to identify potential targets of epigenetic reprogramming by the cancer associated Epstein Barr virus. PLoS One 5(2): e9443
-
(2010)
PLoS One
, vol.5
, Issue.2
-
-
Flower, K.1
Hellen, E.2
Newport, M.J.3
Jones, S.4
Sinclair, A.J.5
-
16
-
-
79952266135
-
Phase 1b-2a study to reverse platinum resistance through use of a hypomethylating agent, azacitidine, in patients with platinumresistant or platinum-refractory epithelial ovarian cancer
-
Fu S, Hu W, Iyer R, Kavanagh JJ, Coleman RL, Levenback CF, Sood AK, Wolf JK, Gershenson DM, Markman M, Hennessy BT, Kurzrock R, Bast Jr RC (2011) Phase 1b-2a study to reverse platinum resistance through use of a hypomethylating agent, azacitidine, in patients with platinumresistant or platinum-refractory epithelial ovarian cancer. Cancer 117(8): 1661-1669
-
(2011)
Cancer
, vol.117
, Issue.8
, pp. 1661-1669
-
-
Fu, S.1
Hu, W.2
Iyer, R.3
Kavanagh, J.J.4
Coleman, R.L.5
Levenback, C.F.6
Sood, A.K.7
Wolf, J.K.8
Gershenson, D.M.9
Markman, M.10
Hennessy, B.T.11
Kurzrock, R.12
Bast Jr., R.C.13
-
17
-
-
51349105905
-
Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line
-
Gal-Yam EN, Egger G, Iniguez L, Holster H, Einarsson S, Zhang X, Lin JC, Liang G, Jones PA, Tanay A (2008) Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line. Proc Natl Acad Sci USA 105(35): 12979-12984
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.35
, pp. 12979-12984
-
-
Gal-Yam, E.N.1
Egger, G.2
Iniguez, L.3
Holster, H.4
Einarsson, S.5
Zhang, X.6
Lin, J.C.7
Liang, G.8
Jones, P.A.9
Tanay, A.10
-
18
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA (2007) A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130: 77-88 (Pubitemid 47031323)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
19
-
-
57749090255
-
Methylation of polycomb target genes in intestinal cancer is mediated by inflammation
-
Hahn MA, Hahn T, Lee DH, Esworthy RS, Kim BW, Riggs AD, Chu FF, Pfeifer GP (2008) Methylation of polycomb target genes in intestinal cancer is mediated by inflammation. Cancer Res 68(24): 10280-10289
-
(2008)
Cancer Res
, vol.68
, Issue.24
, pp. 10280-10289
-
-
Hahn, M.A.1
Hahn, T.2
Lee, D.H.3
Esworthy, R.S.4
Kim, B.W.5
Riggs, A.D.6
Chu, F.F.7
Pfeifer, G.P.8
-
20
-
-
79955400147
-
Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks
-
Hahn MA, Wu X, Li AX, Hahn T, Pfeifer GP (2011) Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks. PLoS One 6(4): e18844
-
(2011)
PLoS One
, vol.6
, Issue.4
-
-
Hahn, M.A.1
Wu, X.2
Li, A.X.3
Hahn, T.4
Pfeifer, G.P.5
-
21
-
-
80054880084
-
DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter
-
Han H, Cortez CC, Yang X, Nichols PW, Jones PA, Liang G (2011) DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter. Hum Mol Genet 20(22): 4299-4310
-
(2011)
Hum Mol Genet
, vol.20
, Issue.22
, pp. 4299-4310
-
-
Han, H.1
Cortez, C.C.2
Yang, X.3
Nichols, P.W.4
Jones, P.A.5
Liang, G.6
-
22
-
-
77953809032
-
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
-
Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, Ruotti V, Wang W, Stewart R, Thomson JA, Ecker JR, Ren B (2010) Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell 6(5): 479-491
-
(2010)
Cell Stem Cell
, vol.6
, Issue.5
, pp. 479-491
-
-
Hawkins, R.D.1
Hon, G.C.2
Lee, L.K.3
Ngo, Q.4
Lister, R.5
Pelizzola, M.6
Edsall, L.E.7
Kuan, S.8
Luu, Y.9
Klugman, S.10
Antosiewicz-Bourget, J.11
Ye, Z.12
Espinoza, C.13
Agarwahl, S.14
Shen, L.15
Ruotti, V.16
Wang, W.17
Stewart, R.18
Thomson, J.A.19
Ecker, J.R.20
Ren, B.21
more..
-
23
-
-
33847304609
-
Gene body-specific methylation on the active X chromosome
-
DOI 10.1126/science.1136352
-
Hellman A, Chess A (2007) Gene body-specific methylation on the active X chromosome. Science 315(5815): 1141-1143 (Pubitemid 46328027)
-
(2007)
Science
, vol.315
, Issue.5815
, pp. 1141-1143
-
-
Hellman, A.1
Chess, A.2
-
24
-
-
80052918929
-
Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment
-
Hodges E, Molaro A, Dos Santos CO, Thekkat P, Song Q, Uren PJ, Park J, Butler J, Rafii S, McCombie WR, Smith AD, Hannon GJ (2011) Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment. Mol Cell 44: 17-28
-
(2011)
Mol Cell
, vol.44
, pp. 17-28
-
-
Hodges, E.1
Molaro, A.2
Dos Santos, C.O.3
Thekkat, P.4
Song, Q.5
Uren, P.J.6
Park, J.7
Butler, J.8
Rafii, S.9
McCombie, W.R.10
Smith, A.D.11
Hannon, G.J.12
-
26
-
-
33847065486
-
The epigenomics of cancer
-
DOI 10.1016/j.cell.2007.01.029, PII S0092867407001274
-
Jones PA, Baylin SB (2007) The epigenomics of cancer. Cell 128(4): 683-692 (Pubitemid 46273572)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 683-692
-
-
Jones, P.A.1
Baylin, S.B.2
-
27
-
-
41649121741
-
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
-
DOI 10.1101/gr.074609.107
-
Komashko VM, Acevedo LG, Squazzo SL, Iyengar SS, Rabinovich A, O'Geen H, Green R, Farnham PJ (2008) Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells. Genome Res 18(4): 521-532 (Pubitemid 351482777)
-
(2008)
Genome Research
, vol.18
, Issue.4
, pp. 521-532
-
-
Komashko, V.M.1
Acevedo, L.G.2
Squazzo, S.L.3
Iyengar, S.S.4
Rabinovich, A.5
O'Geen, H.6
Green, R.7
Farnham, P.J.8
-
28
-
-
77954688477
-
5-azacytidine treatment reorganizes genomic histone modification patterns
-
Komashko VM, Farnham PJ (2010) 5-azacytidine treatment reorganizes genomic histone modification patterns. Epigenetics 5(3): 229-240
-
(2010)
Epigenetics
, vol.5
, Issue.3
, pp. 229-240
-
-
Komashko, V.M.1
Farnham, P.J.2
-
29
-
-
78649969065
-
The DNA methylome of human peripheral blood mononuclear cells
-
Li Y, Zhu J, Tian G, Li N, Li Q, Ye M, Zheng H, Yu J, Wu H, Sun J, Zhang H, Chen Q, Luo R, Chen M, He Y, Jin X, Zhang Q, Yu C, Zhou G, Huang Y, Cao H, Zhou X, Guo S, Hu X, Li X, Kristiansen K, Bolund L, Xu J, Wang W, Yang H, Wang J, Li R, Beck S, Zhang X (2010) The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol 8(11): e1000533
-
(2010)
PLoS Biol
, vol.8
, Issue.11
-
-
Li, Y.1
Zhu, J.2
Tian, G.3
Li, N.4
Li, Q.5
Ye, M.6
Zheng, H.7
Yu, J.8
Wu, H.9
Sun, J.10
Zhang, H.11
Chen, Q.12
Luo, R.13
Chen, M.14
He, Y.15
Jin, X.16
Zhang, Q.17
Yu, C.18
Zhou, G.19
Huang, Y.20
Cao, H.21
Zhou, X.22
Guo, S.23
Hu, X.24
Li, X.25
Kristiansen, K.26
Bolund, L.27
Xu, J.28
Wang, W.29
Yang, H.30
Wang, J.31
Li, R.32
Beck, S.33
Zhang, X.34
more..
-
30
-
-
29244490064
-
Control of transcription through intragenic patterns of nucleosome composition
-
DOI 10.1016/j.cell.2005.12.010, PII S0092867405013929
-
Lieb JD, Clarke ND (2005) Control of transcription through intragenic patterns of nucleosome composition. Cell 123: 1187-1190 (Pubitemid 41821777)
-
(2005)
Cell
, vol.123
, Issue.7
, pp. 1187-1190
-
-
Lieb, J.D.1
Clarke, N.D.2
-
31
-
-
7544231794
-
Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
-
DOI 10.1038/nsmb840
-
Lorincz M, Dickerson D, Schmitt M, Groudine M (2004) Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol 11(11): 1068-1075 (Pubitemid 39453335)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.11
, pp. 1068-1075
-
-
Lorincz, M.C.1
Dickerson, D.R.2
Schmitt, M.3
Groudine, M.4
-
32
-
-
77954504873
-
Conserved role of intragenic DNA methylation in regulating alternative promoters
-
Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C, Nielsen C, Zhao Y, Turecki G, Delaney A, Varhol R, Thiessen N, Shchors K, Heine VM, Rowitch DH, Xing X, Fiore C, Schillebeeckx M, Jones SJ, Haussler D, Marra MA, Hirst M, Wang T, Costello JF (2010) Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature 466(7303): 253-257
-
(2010)
Nature
, vol.466
, Issue.7303
, pp. 253-257
-
-
Maunakea, A.K.1
Nagarajan, R.P.2
Bilenky, M.3
Ballinger, T.J.4
D'Souza, C.5
Fouse, S.D.6
Johnson, B.E.7
Hong, C.8
Nielsen, C.9
Zhao, Y.10
Turecki, G.11
Delaney, A.12
Varhol, R.13
Thiessen, N.14
Shchors, K.15
Heine, V.M.16
Rowitch, D.H.17
Xing, X.18
Fiore, C.19
Schillebeeckx, M.20
Jones, S.J.21
Haussler, D.22
Marra, M.A.23
Hirst, M.24
Wang, T.25
Costello, J.F.26
more..
-
33
-
-
80555125018
-
Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates
-
Nanty L, Carbajosa G, Heap GA, Ratnieks F, van Heel DA, Down TA, Rakyan VK (2011) Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates. Genome Res 21(11): 1841-1850
-
(2011)
Genome Res
, vol.21
, Issue.11
, pp. 1841-1850
-
-
Nanty, L.1
Carbajosa, G.2
Heap, G.A.3
Ratnieks, F.4
Van Heel, D.A.5
Down, T.A.6
Rakyan, V.K.7
-
35
-
-
58849091905
-
A human B cell methylome at 100-base pair resolution
-
Rauch TA, Wu X, Zhong X, Riggs AD, Pfeifer GP (2009) A human B cell methylome at 100-base pair resolution. Proc Natl Acad Sci USA 106: 671-678
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 671-678
-
-
Rauch, T.A.1
Wu, X.2
Zhong, X.3
Riggs, A.D.4
Pfeifer, G.P.5
-
36
-
-
78650584064
-
CpG methylation of half-CRE sequences creates C/EBPalpha binding sites that activate some tissue-specific genes
-
Rishi V, Bhattacharya P, Chatterjee R, Rozenberg J, Zhao J, Glass K, Fitzgerald P, Vinson C (2010) CpG methylation of half-CRE sequences creates C/EBPalpha binding sites that activate some tissue-specific genes. Proc Natl Acad Sci USA 107(47): 20311-20316
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.47
, pp. 20311-20316
-
-
Rishi, V.1
Bhattacharya, P.2
Chatterjee, R.3
Rozenberg, J.4
Zhao, J.5
Glass, K.6
Fitzgerald, P.7
Vinson, C.8
-
37
-
-
84856448763
-
Eagles report: Developing cancer biomarkers from genome-wide DNA methylation analyses
-
Schulz WA, Goering W (2011) Eagles report: developing cancer biomarkers from genome-wide DNA methylation analyses. World J Clin Oncol 2(1): 1-7
-
(2011)
World J Clin Oncol
, vol.2
, Issue.1
, pp. 1-7
-
-
Schulz, W.A.1
Goering, W.2
-
38
-
-
68349125112
-
What controls nucleosome positions?
-
Segal E, Widom J (2009) What controls nucleosome positions? Trends Genet 25(8): 335-343
-
(2009)
Trends Genet
, vol.25
, Issue.8
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
39
-
-
43149125426
-
Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines
-
DOI 10.1101/gr.070961.107
-
Shann YJ, Cheng C, Chiao CH, Chen DT, Li PH, Hsu MT (2008) Genomewide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines. Genome Res 18: 791-801 (Pubitemid 351645069)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 791-801
-
-
Shann, Y.-J.1
Cheng, C.2
Chiao, C.-H.3
Chen, D.-T.4
Li, P.-H.5
Hsu, M.-T.6
-
40
-
-
36748998985
-
Identification of DNA methylation in 3′ genomic regions that are associated with upregulation of gene expression in colorectal cancer
-
Smith JF, Mahmood S, Song F, Morrow A, Smiraglia D, Zhang X, Rajput A, Higgins MJ, Krumm A, Petrelli NJ, Costello JF, Nagase H, Plass C, Held WA (2007) Identification of DNA methylation in 30 genomic regions that are associated with upregulation of gene expression in colorectal cancer. Epigenetics 2(3): 161-172 (Pubitemid 350200394)
-
(2007)
Epigenetics
, vol.2
, Issue.3
, pp. 161-172
-
-
Smith, J.F.1
Mahmood, S.2
Song, F.3
Morrow, A.4
Smiraglia, D.5
Zhang, X.6
Rajput, A.7
Higgins, M.J.8
Krumm, A.9
Petrelli, N.J.10
Costello, J.F.11
Nagase, H.12
Plass, C.13
Held, W.A.14
-
41
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
DOI 10.1038/nrg2341, PII NRG2341
-
Suzuki MM, Bird A (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 9: 465-476 (Pubitemid 351693975)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.6
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
43
-
-
0038581890
-
Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease
-
DOI 10.1038/ng1157
-
Tufarelli C, Stanley JA, Garrick D, Sharpe JA, Ayyub H, Wood WG, Higgs DR (2003) Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat Genet 34: 157-165 (Pubitemid 36666926)
-
(2003)
Nature Genetics
, vol.34
, Issue.2
, pp. 157-165
-
-
Tufarelli, C.1
Sloane Stanley, J.A.2
Garrick, D.3
Sharpe, J.A.4
Ayyub, H.5
Wood, W.G.6
Higgs, D.R.7
-
44
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
DOI 10.1038/ng1598
-
Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schubeler D (2005) Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 37: 853-862 (Pubitemid 41077111)
-
(2005)
Nature Genetics
, vol.37
, Issue.8
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schubeler, D.7
-
45
-
-
77955700020
-
Genome-wide hypomethylation in cancer may be a passive consequence of transformation
-
Wild L, Flanagan JM (2010) Genome-wide hypomethylation in cancer may be a passive consequence of transformation. Biochim Biophys Acta 1806(1): 50-57
-
(2010)
Biochim Biophys Acta
, vol.1806
, Issue.1
, pp. 50-57
-
-
Wild, L.1
Flanagan, J.M.2
-
46
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
DOI 10.1016/S0168-9525(97)01181-5, PII S0168952597011815
-
Yoder JA, Walsh CP, Bestor TH (1997) Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 13: 335-340 (Pubitemid 27309911)
-
(1997)
Trends in Genetics
, vol.13
, Issue.8
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
47
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A, McDaniel IE, Silva P, Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328(5980): 916-919
-
(2010)
Science
, vol.328
, Issue.5980
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
48
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
-
DOI 10.1016/j.cell.2006.08.003, PII S009286740601018X
-
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 126: 1189-1201 (Pubitemid 44380289)
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.-L.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
Ecker, JosephR.11
-
49
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
DOI 10.1038/ng1929, PII NG1929
-
Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S (2007) Genomewide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature genetics 39(1): 61-69 (Pubitemid 46026502)
-
(2007)
Nature Genetics
, vol.39
, Issue.1
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
|