SCOPUS 정보 검색 플랫폼

Amino Acids

Volumn 41, Issue 2, 2011, Pages 291-310

100% protein sequence coverage: A modern form of surrealism in proteomics

(3) Meyer, Bjoern a Papasotiriou, Dimitrios G a Karas, Michael a

a GOETHE UNIVERSITY (Germany)

Author keywords

100 sequence coverage; Bottom up; Middle down; Protein separation; Protein species; Top down

Indexed keywords

AMINO ACID SEQUENCE; CHEMICAL REACTION; COLLISIONALLY ACTIVATED DISSOCIATION; ELECTRON CAPTURE DISSOCIATION; ELECTRON TRANSFER DISSOCIATION; ELECTROSPRAY MASS SPECTROMETRY; ENZYME SPECIFICITY; FUNCTIONAL PROTEOMICS; INTERMETHOD COMPARISON; ION CYCLOTRON RESONANCE MASS SPECTROMETRY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROCESS DEVELOPMENT; PROCESS OPTIMIZATION; PROTEIN CLEAVAGE; PROTEIN DEGRADATION; PROTEIN DETERMINATION; PROTEIN ISOLATION; REVIEW; SEPARATION TECHNIQUE; SEQUENCE ANALYSIS; STRUCTURAL PROTEOMICS; TWO DIMENSIONAL ELECTROPHORESIS;

AMINO ACID SEQUENCE; ANIMALS; HUMANS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEINS; PROTEOMICS; SEQUENCE ANALYSIS, PROTEIN;

EID: 79960258556 PISSN: 09394451 EISSN: 14382199 Source Type: Journal
DOI: 10.1007/s00726-010-0680-6 Document Type: Review

Times cited : (88)

References (167)

1
- 26444447986
- Mass spectrometric analysis of integral membrane proteins at the subpicomolar level: Application to rhodopsin
- DOI 10.1016/j.jchromb.2005.02.022, PII S1570023205002138, Improving Sensitivity in Liquid Chromatography-Mass Spectrometry
- Z Ablonczy RK Crouch DR Knapp 2005 Mass spectrometric analysis of integral membrane proteins at the subpicomolar level: application to rhodopsin J Chromatogr B Analyt Technol Biomed Life Sci 825 169 175 16213448 1:CAS:528:DC%2BD2MXhtVyms7fJ (Pubitemid 41423600)
- (2005) Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences , vol.825 , Issue.2 , pp. 169-175
- Ablonczy, Z.¹ Crouch, R.K.² Knapp, D.R.³

2
- 69249106065
- In vivo phosphorylation site mapping in mouse cardiac troponin i by high resolution top-down electron capture dissociation mass spectrometry: Ser22/23 are the only sites basally phosphorylated
- 19637843 1:CAS:528:DC%2BD1MXpsFSjt70%3D
- S Ayaz-Guner J Zhang L Li JW Walker Y Ge 2009 In vivo phosphorylation site mapping in mouse cardiac troponin I by high resolution top-down electron capture dissociation mass spectrometry: Ser22/23 are the only sites basally phosphorylated Biochemistry 48 8161 8170 19637843 1:CAS:528:DC%2BD1MXpsFSjt70%3D
- (2009) Biochemistry , vol.48 , pp. 8161-8170
- Ayaz-Guner, S.¹ Zhang, J.² Li, L.³ Walker, J.W.⁴ Ge, Y.⁵

3
- 71549132222
- Quantification of membrane proteins using nonspecific protease digestions
- M Bendz MC Möller G Arrigoni A Wahlander R Stella S Cappadona F Levander L Hederstedt P James 2008 Quantification of membrane proteins using nonspecific protease digestions J Proteome Res 8 5666 5673
- (2008) J Proteome Res , vol.8 , pp. 5666-5673
- Bendz, M.¹ Möller, M.C.² Arrigoni, G.³ Wahlander, A.⁴ Stella, R.⁵ Cappadona, S.⁶ Levander, F.⁷ Hederstedt, L.⁸ James, P.⁹

4
- 33748573295
- Enhanced sequence coverage of proteins in human cerebrospinal fluid using multiple enzymatic digestion and linear ion trap LC-MS/MS
- DOI 10.1093/bfgp/ell026
- RG Biringer H Amato MG Harrington AN Fonteh JN Riggins AF Hühmer 2006 Enhanced sequence coverage of proteins in human cerebrospinal fluid using multiple enzymatic digestion and linear ion trap LC-MS/MS Brief Funct Genomic Proteomic 5 144 153 16772279 1:CAS:528:DC%2BD28XhtVSrsb7N (Pubitemid 46403007)
- (2006) Briefings in Functional Genomics and Proteomics , vol.5 , Issue.2 , pp. 144-153
- Biringer, R.G.¹ Amato, H.² Harrington, M.G.³ Fonteh, A.N.⁴ Riggins, J.N.⁵ Huhmer, A.F.R.⁶

5
- 55749096879
- Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteins
- 18780350 1:CAS:528:DC%2BD1cXht1KgtbbE
- AR Blackler AE Speers CC Wu 2008 Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteins Proteomics 8 3956 3964 18780350 1:CAS:528:DC%2BD1cXht1KgtbbE
- (2008) Proteomics , vol.8 , pp. 3956-3964
- Blackler, A.R.¹ Speers, A.E.² Wu, C.C.³

6
- 51649102828
- A shotgun proteomic method for the identification of membrane-embedded proteins and peptides
- 18537282 1:CAS:528:DC%2BD1cXmvVGrs74%3D
- AR Blackler AE Speers MS Ladinsky CC Wu 2008 A shotgun proteomic method for the identification of membrane-embedded proteins and peptides J Proteome Res 7 3028 3034 18537282 1:CAS:528:DC%2BD1cXmvVGrs74%3D
- (2008) J Proteome Res , vol.7 , pp. 3028-3034
- Blackler, A.R.¹ Speers, A.E.² Ladinsky, M.S.³ Wu, C.C.⁴

7
- 0942276251
- A detergent- and cyanogen bromide-free method for integral membrane proteomics: Application to Halobacterium purple membranes and the human epidermal membrane proteome
- DOI 10.1002/pmic.200300543
- J Blonder TP Conrads LR Yu A Terunuma GM Janini HJ Issaq JC Vogel TD Veenstra 2004 A detergent- and cyanogen bromide-free method for integral membrane proteomics: application to Halobacterium purple membranes and the human epidermal membrane proteome Proteomics 4 31 45 14730670 1:CAS:528: DC%2BD2cXhtVamtbk%3D (Pubitemid 38140873)
- (2004) Proteomics , vol.4 , Issue.1 , pp. 31-45
- Blonder, J.¹ Conrads, T.P.² Yu, L.-R.³ Terunuma, A.⁴ Janini, G.M.⁵ Issaq, H.J.⁶ Vogel, J.C.⁷ Veenstra, T.D.⁸

8
- 66149129985
- Straightforward and de novo peptide sequencing by MALDI-MS/MS using a Lys-N metalloendopeptidase
- 19043101 1:CAS:528:DC%2BD1MXksFWqtLY%3D
- PJ Boersema N Taouatas AF Altelaar JW Gouw PL Ross DJ Pappin AJ Heck S Mohammed 2009 Straightforward and de novo peptide sequencing by MALDI-MS/MS using a Lys-N metalloendopeptidase Mol Cell Proteomics 8 650 660 19043101 1:CAS:528:DC%2BD1MXksFWqtLY%3D
- (2009) Mol Cell Proteomics , vol.8 , pp. 650-660
- Boersema, P.J.¹ Taouatas, N.² Altelaar, A.F.³ Gouw, J.W.⁴ Ross, P.L.⁵ Pappin, D.J.⁶ Heck, A.J.⁷ Mohammed, S.⁸

9
- 67650754060
- Mass measurement and top-down HPLC/MS analysis of intact monoclonal antibodies on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer
- 19409810 1:CAS:528:DC%2BD1MXptV2msL8%3D
- PV Bondarenko TP Second V Zabrouskov A Makarov Z Zhang 2009 Mass measurement and top-down HPLC/MS analysis of intact monoclonal antibodies on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer J Am Soc Mass Spectrom 20 1415 1424 19409810 1:CAS:528:DC%2BD1MXptV2msL8%3D
- (2009) J Am Soc Mass Spectrom , vol.20 , pp. 1415-1424
- Bondarenko, P.V.¹ Second, T.P.² Zabrouskov, V.³ Makarov, A.⁴ Zhang, Z.⁵

10
- 77149121742
- A novel polyacrylamide gel system for proteomic use offering controllable pore expansion by crosslinker cleavage
- 20162583 1:CAS:528:DC%2BC3cXit1amsr0%3D
- S Bornemann B Rietschel S Baltruschat M Karas B Meyer 2010 A novel polyacrylamide gel system for proteomic use offering controllable pore expansion by crosslinker cleavage Electrophoresis 31 585 592 20162583 1:CAS:528:DC%2BC3cXit1amsr0%3D
- (2010) Electrophoresis , vol.31 , pp. 585-592
- Bornemann, S.¹ Rietschel, B.² Baltruschat, S.³ Karas, M.⁴ Meyer, B.⁵

11
- 63049100764
- The art of observing rare protein species in proteomes with peptide ligand libraries
- 19235170 1:CAS:528:DC%2BD1MXksVKru7o%3D
- E Boschetti PG Righetti 2009 The art of observing rare protein species in proteomes with peptide ligand libraries Proteomics 9 1492 1510 19235170 1:CAS:528:DC%2BD1MXksVKru7o%3D
- (2009) Proteomics , vol.9 , pp. 1492-1510
- Boschetti, E.¹ Righetti, P.G.²

12
- 60849093201
- Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval
- 19053528 1:CAS:528:DC%2BD1cXhsVShsLjE
- MT Boyne BA Garcia M Li L Zamdborg CD Wenger S Babai NL Kelleher 2009 Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval J Proteome Res 8 374 379 19053528 1:CAS:528:DC%2BD1cXhsVShsLjE
- (2009) J Proteome Res , vol.8 , pp. 374-379
- Boyne, M.T.¹ Garcia, B.A.² Li, M.³ Zamdborg, L.⁴ Wenger, C.D.⁵ Babai, S.⁶ Kelleher, N.L.⁷

13
- 48349147103
- Top-down identification and characterization of biomolecules by mass spectrometry
- K Breuker M Jin X Han H Jiang FW McLafferty 2008 Top-down identification and characterization of biomolecules by mass spectrometry J Am Soc Mass Spectrom 19 1049 1053
- (2008) J Am Soc Mass Spectrom , vol.19 , pp. 1049-1053
- Breuker, K.¹ Jin, M.² Han, X.³ Jiang, H.⁴ McLafferty, F.W.⁵

14
- 69249125736
- Overview on modern approaches to speed up protein identification workflows relying on enzymatic cleavage and mass spectrometry-based techniques
- 19720186 1:CAS:528:DC%2BD1MXhtVOmt73F
- JL Capelo R Carreira M Diniz L Fernandes M Galesio C Lodeiro HM Santos G Vale 2009 Overview on modern approaches to speed up protein identification workflows relying on enzymatic cleavage and mass spectrometry-based techniques Anal Chim Acta 650 151 159 19720186 1:CAS:528:DC%2BD1MXhtVOmt73F
- (2009) Anal Chim Acta , vol.650 , pp. 151-159
- Capelo, J.L.¹ Carreira, R.² Diniz, M.³ Fernandes, L.⁴ Galesio, M.⁵ Lodeiro, C.⁶ Santos, H.M.⁷ Vale, G.⁸

15
- 0034235367
- Relating electrospray ionization response to nonpolar character of small peptides
- DOI 10.1021/ac9914869
- NB Cech CG Enke 2000 Relating electrospray ionization response to nonpolar character of small peptides Anal Chem 72 2717 2723 10905298 1:CAS:528:DC%2BD3cXjtlyns7c%3D (Pubitemid 30452234)
- (2000) Analytical Chemistry , vol.72 , Issue.13 , pp. 2717-2723
- Cech, N.B.¹ Enke, C.G.²

16
- 61849164561
- Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry
- 19159218 1:CAS:528:DC%2BD1MXotlGltg%3D%3D
- R Chen X Jiang D Sun G Han F Wang M Ye L Wang H Zou 2009 Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry J Proteome Res 8 651 661 19159218 1:CAS:528: DC%2BD1MXotlGltg%3D%3D
- (2009) J Proteome Res , vol.8 , pp. 651-661
- Chen, R.¹ Jiang, X.² Sun, D.³ Han, G.⁴ Wang, F.⁵ Ye, M.⁶ Wang, L.⁷ Zou, H.⁸

17
- 76649126399
- Silk cocoon of Bombyx mori: Proteins and posttranslational modifications-heavy phosphorylation and evidence for lysine-mediated cross links
- 20029844 1:CAS:528:DC%2BC3cXhvFGhsbk%3D
- WQ Chen H Priewalder JP John G Lubec 2010 Silk cocoon of Bombyx mori: proteins and posttranslational modifications-heavy phosphorylation and evidence for lysine-mediated cross links Proteomics 10 369 379 20029844 1:CAS:528:DC%2BC3cXhvFGhsbk%3D
- (2010) Proteomics , vol.10 , pp. 369-379
- Chen, W.Q.¹ Priewalder, H.² John, J.P.³ Lubec, G.⁴

18
- 64049090430
- Influence of different proteomic protocols on degree of high-coverage identification of nonspecific lipid transfer protein 1 modified during malting
- 19156768 1:CAS:528:DC%2BD1MXjsFKitLw%3D
- J Chmelik J Zidkova P Rehulka I Petry-Podgorska J Bobalova 2009 Influence of different proteomic protocols on degree of high-coverage identification of nonspecific lipid transfer protein 1 modified during malting Electrophoresis 30 560 567 19156768 1:CAS:528:DC%2BD1MXjsFKitLw%3D
- (2009) Electrophoresis , vol.30 , pp. 560-567
- Chmelik, J.¹ Zidkova, J.² Rehulka, P.³ Petry-Podgorska, I.⁴ Bobalova, J.⁵

19
- 0037274605
- Multiple enzymatic digestion for enhanced sequence coverage of proteins in complex proteomic mixtures using capillary LC with ion trap MS/MS
- DOI 10.1021/pr025557n
- G Choudhary SL Wu P Shieh WS Hancock 2003 Multiple enzymatic digestion for enhanced sequence coverage of proteins in complex proteomic mixtures using capillary LC with ion trap MS/MS J Proteome Res 2 59 67 12643544 1:CAS:528:DC%2BD38XovV2ltL8%3D (Pubitemid 36207191)
- (2003) Journal of Proteome Research , vol.2 , Issue.1 , pp. 59-67
- Choudhary, G.¹ Wu, S.-L.² Shieh, P.³ Hancock, W.S.⁴

20
- 34547572949
- Is Proteomics the New Genomics?
- DOI 10.1016/j.cell.2007.07.032, PII S0092867407009701
- J Cox M Mann 2007 Is proteomics the new genomics? Cell 130 395 398 17693247 1:CAS:528:DC%2BD2sXptlynt7k%3D (Pubitemid 47198310)
- (2007) Cell , vol.130 , Issue.3 , pp. 395-398
- Cox, J.¹ Mann, M.²

21
- 43049153287
- Chemical cleavage of proteins on membranes, Chap 11
- Unit 11.5
- Crimmins DL, Mische SM, Denslow ND (2001) Chemical cleavage of proteins on membranes, Chap 11. Curr Protoc Protein Sci Unit 11.5
- (2001) Curr Protoc Protein Sci
- Crimmins, D.L.¹ Mische, S.M.² Denslow, N.D.³

22
- 43049153287
- Chemical cleavage of proteins in solution, Chap 11
- Unit 11.4
- Crimmins DL, Mische SM, Denslow ND (2005) Chemical cleavage of proteins in solution, Chap 11. Curr Protoc Protein Sci Unit 11.4
- (2005) Curr Protoc Protein Sci
- Crimmins, D.L.¹ Mische, S.M.² Denslow, N.D.³

23
- 33745591083
- Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
- 16784548
- LMF de Godoy JV Olsen GA de Souza G Li P Mortensen M Mann 2006 Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system Genome Biol 7 R50 16784548
- (2006) Genome Biol , vol.7 , pp. 50
- De Godoy, L.M.F.¹ Olsen, J.V.² De Souza, G.A.³ Li, G.⁴ Mortensen, P.⁵ Mann, M.⁶

24
- 55249096894
- Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
- 18820680
- LMF de Godoy JV Olsen J Cox ML Nielsen NC Hubner F Fröhlich TC Walther M Mann 2008 Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast Nature 455 1251 1254 18820680
- (2008) Nature , vol.455 , pp. 1251-1254
- De Godoy, L.M.F.¹ Olsen, J.V.² Cox, J.³ Nielsen, M.L.⁴ Hubner, N.C.⁵ Fröhlich, F.⁶ Walther, T.C.⁷ Mann, M.⁸

25
- 33747177566
- A targeted proteomic approach for the analysis of rat liver mitochondrial outer membrane proteins with extensive sequence coverage
- DOI 10.1016/j.ab.2006.03.053, PII S0003269706002454
- AM Distler J Kerner SM Peterman CL Hoppel 2006 A targeted proteomic approach for the analysis of rat liver mitochondrial outer membrane proteins with extensive sequence coverage Anal Biochem 356 18 29 16876102 1:CAS:528:DC%2BD28XotlKnsLc%3D (Pubitemid 44232722)
- (2006) Analytical Biochemistry , vol.356 , Issue.1 , pp. 18-29
- Distler, A.M.¹ Kerner, J.² Peterman, S.M.³ Hoppel, C.L.⁴

26
- 0036085009
- Cross signaling, cell specificity, and physiology
- 12055068 1:CAS:528:DC%2BD38XlsVCkurY%3D
- JE Dumont S Dremier I Pirson C Maenhaut 2002 Cross signaling, cell specificity, and physiology Am J Physiol Cell Physiol 283 C2 C28 12055068 1:CAS:528:DC%2BD38XlsVCkurY%3D
- (2002) Am J Physiol Cell Physiol , vol.283
- Dumont, J.E.¹ Dremier, S.² Pirson, I.³ Maenhaut, C.⁴

27
- 77951833317
- High resolution electron transfer dissociation (ETD) studies of unfractionated intact histones from murine embryonic stem cells using online capillary LC separation: Determination of abundant histone isoforms and post-translational modifications
- Eliuk SM, Maltby D, Panning B, Burlingame AL (2010) High resolution electron transfer dissociation (ETD) studies of unfractionated intact histones from murine embryonic stem cells using online capillary LC separation: determination of abundant histone isoforms and post-translational modifications. Mol Cell Proteomics 9:824-837
- (2010) Mol Cell Proteomics , vol.9 , pp. 824-837
- Eliuk, S.M.¹ Maltby, D.² Panning, B.³ Burlingame, A.L.⁴

28
- 55049110246
- Improved proteome coverage by using iTRAQ labelling and peptide OFFGEL fractionation
- Ernoult E, Gamelin E, Guette C (2008) Improved proteome coverage by using iTRAQ labelling and peptide OFFGEL fractionation. Proteome Sci 6:27
- (2008) Proteome Sci , vol.6 , pp. 27
- Ernoult, E.¹ Gamelin, E.² Guette, C.³

29
- 33646557331
- Protein cleavage strategies for an improved analysis of the membrane proteome
- 16512920
- F Fischer A Poetsch 2006 Protein cleavage strategies for an improved analysis of the membrane proteome Proteome Sci 4 2 16512920
- (2006) Proteome Sci , vol.4 , pp. 2
- Fischer, F.¹ Poetsch, A.²

30
- 33645466243
- Toward the complete membrane proteome: High coverage of integral membrane proteins through transmembrane peptide detection
- 16291997 1:CAS:528:DC%2BD28XivVWltLc%3D
- F Fischer D Wolters M Rögner A Poetsch 2006 Toward the complete membrane proteome: high coverage of integral membrane proteins through transmembrane peptide detection Mol Cell Proteomics 5 444 453 16291997 1:CAS:528:DC%2BD28XivVWltLc%3D
- (2006) Mol Cell Proteomics , vol.5 , pp. 444-453
- Fischer, F.¹ Wolters, D.² Rögner, M.³ Poetsch, A.⁴

31
- 0035433686
- Toward efficient analysis of >70 kDa proteins with 100% sequence coverage
- DOI 10.1002/1615-9861(200108)1:8<927::AID-PROT927>3.0.CO;2-T
- AJ Forbes MT Mazur HM Patel CT Walsh NL Kelleher 2001 Toward efficient analysis of >70 kDa proteins with 100% sequence coverage Proteomics 1 927 933 11683509 1:CAS:528:DC%2BD3MXmvV2ntr0%3D (Pubitemid 33699609)
- (2001) Proteomics , vol.1 , Issue.8 , pp. 927-933
- Forbes, A.J.¹ Mazur, M.T.² Patel, H.M.³ Walsh, C.T.⁴ Kelleher, N.L.⁵

32
- 34250172066
- Achieving augmented limits of detection for peptides with hydrophobic alkyl tags
- DOI 10.1021/ac070558q
- JL Frahm ID Bori DL Comins AM Hawkridge DC Muddiman 2007 Achieving augmented limits of detection for peptides with hydrophobic alkyl tags Anal Chem 79 3989 3995 17477508 1:CAS:528:DC%2BD2sXkvVCltro%3D (Pubitemid 46903146)
- (2007) Analytical Chemistry , vol.79 , Issue.11 , pp. 3989-3995
- Frahm, J.L.¹ Bori, I.D.² Comins, D.L.³ Hawkridge, A.M.⁴ Muddiman, D.C.⁵

33
- 0023831539
- The complete amino acid sequence of human skeletal-muscle fructose-bisphosphate aldolase
- PS Freemont B Dunbar LA Fothergill-Gilmore 1988 The complete amino acid sequence of human skeletal-muscle fructose-bisphosphate aldolase Biochem J 249 779 788 3355497 1:CAS:528:DyaL1cXht1Omu70%3D (Pubitemid 18042797)
- (1988) Biochemical Journal , vol.249 , Issue.3 , pp. 779-788
- Freemont, P.S.¹ Dunbar, B.² Fothergill-Gilmore, L.A.³

34
- 51049093616
- Identification of the mitochondrial ND3 subunit as a structural component involved in the active/deactive enzyme transition of respiratory complex i
- 18502755 1:CAS:528:DC%2BD1cXoslWrtr0%3D
- A Galkin B Meyer I Wittig M Karas H Schägger A Vinogradov U Brandt 2008 Identification of the mitochondrial ND3 subunit as a structural component involved in the active/deactive enzyme transition of respiratory complex I J Biol Chem 283 20907 20913 18502755 1:CAS:528:DC%2BD1cXoslWrtr0%3D
- (2008) J Biol Chem , vol.283 , pp. 20907-20913
- Galkin, A.¹ Meyer, B.² Wittig, I.³ Karas, M.⁴ Schägger, H.⁵ Vinogradov, A.⁶ Brandt, U.⁷

35
- 74249106136
- What does the future hold for top down mass spectrometry?
- 19942451 1:CAS:528:DC%2BC3cXhtVaksbw%3D
- BA Garcia 2010 What does the future hold for top down mass spectrometry? J Am Soc Mass Spectrom 21 193 202 19942451 1:CAS:528:DC%2BC3cXhtVaksbw%3D
- (2010) J Am Soc Mass Spectrom , vol.21 , pp. 193-202
- Garcia, B.A.¹

36
- 34249779529
- Pervasive combinatorial modification of histone H3 in human cells
- DOI 10.1038/nmeth1052, PII NMETH1052
- BA Garcia JJ Pesavento CA Mizzen NL Kelleher 2007 Pervasive combinatorial modification of histone H3 in human cells Nat Methods 4 487 489 17529979 1:CAS:528:DC%2BD2sXlvVyrsrY%3D (Pubitemid 46852073)
- (2007) Nature Methods , vol.4 , Issue.6 , pp. 487-489
- Garcia, B.A.¹ Pesavento, J.J.² Mizzen, C.A.³ Kelleher, N.L.⁴

37
- 66349106471
- Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach
- 19413330 1:CAS:528:DC%2BD1MXltl2iu7c%3D
- S Gauci AO Helbig M Slijper J Krijgsveld AJ Heck S Mohammed 2009 Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach Anal Chem 81 4493 4501 19413330 1:CAS:528: DC%2BD1MXltl2iu7c%3D
- (2009) Anal Chem , vol.81 , pp. 4493-4501
- Gauci, S.¹ Helbig, A.O.² Slijper, M.³ Krijgsveld, J.⁴ Heck, A.J.⁵ Mohammed, S.⁶

38
- 55249110426
- Experimental evaluation of protein identification by an LC/MALDI/on-target digestion approach
- 18597512 1:CAS:528:DC%2BD1cXnvF2gs78%3D
- M Getie-Kebtie P Franke R Aksamit MA Alterman 2008 Experimental evaluation of protein identification by an LC/MALDI/on-target digestion approach J Proteome Res 7 3697 3707 18597512 1:CAS:528:DC%2BD1cXnvF2gs78%3D
- (2008) J Proteome Res , vol.7 , pp. 3697-3707
- Getie-Kebtie, M.¹ Franke, P.² Aksamit, R.³ Alterman, M.A.⁴

39
- 14644425240
- Perspectives in spicing up proteomics with splicing
- DOI 10.1002/pmic.200401051
- J Godovac-Zimmermann O Kleiner LR Brown AK Drukier 2005 Perspectives in spicing up proteomics with splicing Proteomics 5 699 709 15693068 1:CAS:528:DC%2BD2MXitlSjsro%3D (Pubitemid 40316054)
- (2005) Proteomics , vol.5 , Issue.3 , pp. 699-709
- Godovac-Zimmermann, J.¹ Kleiner, O.² Brown, L.R.³ Drukier, A.K.⁴

40
- 69249221406
- 2-DE with IPGs
- Görg A, Drews O, Lück C, Weiland F, Weiss W (2009) 2-DE with IPGs. Electrophoresis 30:S122-S132
- (2009) Electrophoresis , vol.30
- Görg, A.¹ Drews, O.² Lück, C.³ Weiland, F.⁴ Weiss, W.⁵

41
- 4444320836
- Proteolysis and mass spectrometric analysis of an integral membrane: Aquaporin 0
- DOI 10.1021/pr049945w
- J Han KL Schey 2004 Proteolysis and mass spectrometric analysis of an integral membrane: aquaporin 0 J Proteome Res 3 807 812 15359735 1:CAS:528:DC%2BD2cXktValsbk%3D (Pubitemid 39166242)
- (2004) Journal of Proteome Research , vol.3 , Issue.4 , pp. 807-812
- Han, J.¹ Schey, K.L.²

42
- 0001985795
- Current developments of chemical cleavage of proteins
- KK Han C Richard G Biserte 1982 Current developments of chemical cleavage of proteins Int J Biochem 15 875 884
- (1982) Int J Biochem , vol.15 , pp. 875-884
- Han, K.K.¹ Richard, C.² Biserte, G.³

43
- 33749606981
- Extending top-down mass spectrometry to proteins with masses great than 200 kilodaltons
- DOI 10.1126/science.1128868
- X Han M Jin K Breuker FW McLafferty 2006 Extending Top-Down Mass Spectrometry to Proteins with Masses Greater than 200 Kilodaltons Science 314 109 112 17023655 1:CAS:528:DC%2BD28XhtVCiurrM (Pubitemid 44547751)
- (2006) Science , vol.314 , Issue.5796 , pp. 109-112
- Han, X.¹ Jin, M.² Breuker, K.³ McLafferty, F.W.⁴

44
- 0036712837
- On-probe digestion of bacterial proteins for MALDI-MS
- DOI 10.1021/ac025636i
- WA Harris JP Reilly 2002 On-probe digestion of bacterial proteins for MALDI-MS Anal Chem 74 4410 4416 12236349 1:CAS:528:DC%2BD38Xls1ais7k%3D (Pubitemid 35006428)
- (2002) Analytical Chemistry , vol.74 , Issue.17 , pp. 4410-4416
- Harris, W.A.¹ Reilly, J.P.²

45
- 44449120453
- Online microwave D-cleavage LC-ESI-MS/MS of intact proteins: Site-specific cleavages at aspartic acid residues and disulfide bonds
- 18198820 1:CAS:528:DC%2BD1cXntlKnuw%3D%3D
- NJ Hauser F Basile 2008 Online microwave D-cleavage LC-ESI-MS/MS of intact proteins: site-specific cleavages at aspartic acid residues and disulfide bonds J Proteome Res 7 1012 1026 18198820 1:CAS:528:DC%2BD1cXntlKnuw%3D%3D
- (2008) J Proteome Res , vol.7 , pp. 1012-1026
- Hauser, N.J.¹ Basile, F.²

46
- 52049104257
- Electron transfer dissociation of peptides generated by microwave D-cleavage digestion of proteins
- 18363321 1:CAS:528:DC%2BD1cXjslSgtLw%3D
- NJ Hauser H Han SA McLuckey F Basile 2008 Electron transfer dissociation of peptides generated by microwave D-cleavage digestion of proteins J Proteome Res 7 1867 1872 18363321 1:CAS:528:DC%2BD1cXjslSgtLw%3D
- (2008) J Proteome Res , vol.7 , pp. 1867-1872
- Hauser, N.J.¹ Han, H.² McLuckey, S.A.³ Basile, F.⁴

47
- 34249945258
- Far-field optical nanoscopy
- DOI 10.1126/science.1137395
- SW Hell 2007 Far-field optical nanoscopy Science 316 1153 1158 17525330 1:CAS:528:DC%2BD2sXls1KitL4%3D (Pubitemid 46877470)
- (2007) Science , vol.316 , Issue.5828 , pp. 1153-1158
- Hell, S.W.¹

48
- 0028983813
- Improvement of an "in-Gel" digestion procedure for the micropreparation of internal protein fragments for amino acid sequencing
- 7710111 1:CAS:528:DyaK2MXjtFOrt7g%3D
- U Hellman C Wernstedt J Gonez CH Heldin 1995 Improvement of an "In-Gel" digestion procedure for the micropreparation of internal protein fragments for amino acid sequencing Anal Biochem 224 451 455 7710111 1:CAS:528:DyaK2MXjtFOrt7g%3D
- (1995) Anal Biochem , vol.224 , pp. 451-455
- Hellman, U.¹ Wernstedt, C.² Gonez, J.³ Heldin, C.H.⁴

49
- 70349102102
- Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation
- 19689115 1:CAS:528:DC%2BD1MXhtVSgtbnF
- ML Hennrich PJ Boersema H van den Toorn N Mischerikow AJ Heck S Mohammed 2009 Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation Anal Chem 81 7814 7822 19689115 1:CAS:528:DC%2BD1MXhtVSgtbnF
- (2009) Anal Chem , vol.81 , pp. 7814-7822
- Hennrich, M.L.¹ Boersema, P.J.² Van Den Toorn, H.³ Mischerikow, N.⁴ Heck, A.J.⁵ Mohammed, S.⁶

50
- 33745129565
- The necessity of functional proteomics: Protein species and molecular function elucidation exemplified by in vivo alpha A crystallin N-terminal truncation
- DOI 10.1007/s00726-005-0377-4, Special issue: Focus on Neuropeptides in Anxiety and Depression
- W Hoehenwarter R Ackermann U Zimny-Arndt NM Kumar PR Jungblut 2006 The necessity of functional proteomics: protein species and molecular function elucidation exemplified by in vivo alpha A crystallin N-terminal truncation Amino Acids 31 317 323 16964561 1:CAS:528:DC%2BD28XhtVKjtLnN (Pubitemid 44537058)
- (2006) Amino Acids , vol.31 , Issue.3 , pp. 317-323
- Hoehenwarter, W.¹ Ackermann, R.² Zimny-Arndt, U.³ Kumar, N.M.⁴ Jungblut, P.R.⁵

51
- 0034667929
- Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins
- 11055690 1:CAS:528:DC%2BD3cXms1Shs7c%3D
- DM Horn Y Ge FW McLafferty 2000 Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins Anal Chem 72 4778 4784 11055690 1:CAS:528:DC%2BD3cXms1Shs7c%3D
- (2000) Anal Chem , vol.72 , pp. 4778-4784
- Horn, D.M.¹ Ge, Y.² McLafferty, F.W.³

52
- 0020688764
- Cleavage at aspartic acid
- 6304451 1:CAS:528:DyaL3sXktValu7c%3D
- AS Inglis 1983 Cleavage at aspartic acid Methods Enzymol 91 324 332 6304451 1:CAS:528:DyaL3sXktValu7c%3D
- (1983) Methods Enzymol , vol.91 , pp. 324-332
- Inglis, A.S.¹

53
- 48349109797
- Comparison of HPLC/ESI-FTICR MS versus MALDI-TOF/TOF MS for glycopeptide analysis of a highly glycosylated HIV envelope glycoprotein
- 18565761 1:CAS:528:DC%2BD1cXps1WltLg%3D
- J Irungu EP Go Y Zhang DS Dalpathado HX Liao BF Haynes H Desaire 2008 Comparison of HPLC/ESI-FTICR MS versus MALDI-TOF/TOF MS for glycopeptide analysis of a highly glycosylated HIV envelope glycoprotein J Am Soc Mass Spectrom 19 1209 1220 18565761 1:CAS:528:DC%2BD1cXps1WltLg%3D
- (2008) J Am Soc Mass Spectrom , vol.19 , pp. 1209-1220
- Irungu, J.¹ Go, E.P.² Zhang, Y.³ Dalpathado, D.S.⁴ Liao, H.X.⁵ Haynes, B.F.⁶ Desaire, H.⁷

54
- 67049110207
- Chemical cleavage-assisted tryptic digestion for membrane proteome analysis
- 19348461 1:CAS:528:DC%2BD1MXlt1GqtLs%3D
- M Iwasaki T Masuda M Tomita Y Ishihama 2009 Chemical cleavage-assisted tryptic digestion for membrane proteome analysis J Proteome Res 8 3169 3175 19348461 1:CAS:528:DC%2BD1MXlt1GqtLs%3D
- (2009) J Proteome Res , vol.8 , pp. 3169-3175
- Iwasaki, M.¹ Masuda, T.² Tomita, M.³ Ishihama, Y.⁴

55
- 39749139655
- Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching
- DOI 10.1021/pr070545t
- M Jansson K Warell F Levander P James 2008 Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching J Proteome Res 7 659 665 18161939 1:CAS:528:DC%2BD1cXntFem (Pubitemid 351294028)
- (2008) Journal of Proteome Research , vol.7 , Issue.2 , pp. 659-665
- Jansson, M.¹ Warell, K.² Levander, F.³ James, P.⁴

56
- 50449099939
- 4-Chloro-alpha-cyanocinnamic acid is an advanced, rationally designed MALDI matrix
- 18723668 1:CAS:528:DC%2BD1cXhtVOhtr3I
- TW Jaskolla WD Lehmann M Karas 2008 4-Chloro-alpha-cyanocinnamic acid is an advanced, rationally designed MALDI matrix Proc Natl Acad Sci USA 105 12200 12205 18723668 1:CAS:528:DC%2BD1cXhtVOhtr3I
- (2008) Proc Natl Acad Sci USA , vol.105 , pp. 12200-12205
- Jaskolla, T.W.¹ Lehmann, W.D.² Karas, M.³

57
- 67650394372
- Comparison between the matrices alpha-cyano-4-hydroxycinnamic acid and 4-chloro-alpha-cyanocinnamic acid for trypsin, chymotrypsin, and pepsin digestions by MALDI-TOF mass spectrometry
- 19435303 1:CAS:528:DC%2BD1MXms1yqsbw%3D
- TW Jaskolla DG Papasotiriou M Karas 2009 Comparison between the matrices alpha-cyano-4-hydroxycinnamic acid and 4-chloro-alpha-cyanocinnamic acid for trypsin, chymotrypsin, and pepsin digestions by MALDI-TOF mass spectrometry J Proteome Res 8 3588 3597 19435303 1:CAS:528:DC%2BD1MXms1yqsbw%3D
- (2009) J Proteome Res , vol.8 , pp. 3588-3597
- Jaskolla, T.W.¹ Papasotiriou, D.G.² Karas, M.³

58
- 33745618434
- Mass spectrometrical verification of stomatin-like protein 2 (SLP-2) primary structure
- DOI 10.1002/prot.20987
- JP John D Anrather A Pollak G Lubec 2006 Mass spectrometrical verification of stomatin-like protein 2 (SLP-2) primary structure Proteins 64 543 551 16671055 1:CAS:528:DC%2BD28Xms1Wlsr0%3D (Pubitemid 43993661)
- (2006) Proteins: Structure, Function and Genetics , vol.64 , Issue.2 , pp. 543-551
- John, J.P.P.¹ Anrather, D.² Pollak, A.³ Lubec, G.⁴

59
- 0030070176
- Resolution power of two-dimensional electrophoresis and identification of proteins from gels
- DOI 10.1002/elps.1150170505
- PR Jungblut B Thiede U Zimny-Arndt EC Muller C Scheler B Wittmann-Liebold A Otto 1996 Resolution power of two-dimensional electrophoresis and identification of proteins from gels Electrophoresis 17 839 847 8783010 1:CAS:528:DyaK28Xjtlylt7c%3D (Pubitemid 26000778)
- (1996) Electrophoresis , vol.17 , Issue.5 , pp. 839-847
- Jungblut, P.¹ Thiede, B.² Zimny-Arndt, U.³ Muller, E.-C.⁴ Scheler, C.⁵ Wittmann-Liebold, B.⁶ Otto, A.⁷

60
- 48849116981
- The speciation of the proteome
- 18638390
- PR Jungblut HG Holzhütter R Apweiler H Schlüter 2008 The speciation of the proteome Chem Cent J 2 16 18638390
- (2008) Chem Cent J , vol.2 , pp. 16
- Jungblut, P.R.¹ Holzhütter, H.G.² Apweiler, R.³ Schlüter, H.⁴

61
- 0037090536
- A 2-D liquid separations/mass mapping method for interlysate comparison of ovarian cancers
- DOI 10.1021/ac011159c
- MT Kachman H Wang DR Schwartz KR Cho DM Lubman 2002 A 2-D liquid separations/mass mapping method for interlysate comparison of ovarian cancers Anal Chem 74 1779 1791 11985308 1:CAS:528:DC%2BD38Xhsl2nsbw%3D (Pubitemid 34303740)
- (2002) Analytical Chemistry , vol.74 , Issue.8 , pp. 1779-1791
- Kachman, M.T.¹ Wang, H.² Schwartz, D.R.³ Cho, K.R.⁴ Lubman, D.M.⁵

62
- 66149096321
- Sensitive and specific identification of wild type and variant proteins from 8 to 669 kDa using top down mass spectrometry
- 19074999 1:CAS:528:DC%2BD1MXksFWqurs%3D
- NM Karabacak L Li A Tiwari LJ Hayward P Hong ML Easterling JN Agar 2009 Sensitive and specific identification of wild type and variant proteins from 8 to 669 kDa using top down mass spectrometry Mol Cell Proteomics 8 846 856 19074999 1:CAS:528:DC%2BD1MXksFWqurs%3D
- (2009) Mol Cell Proteomics , vol.8 , pp. 846-856
- Karabacak, N.M.¹ Li, L.² Tiwari, A.³ Hayward, L.J.⁴ Hong, P.⁵ Easterling, M.L.⁶ Agar, J.N.⁷

63
- 0033518556
- Top-down versus bottom-up protein characterization by tandem high resolution mass spectrometry
- 1:CAS:528:DyaK1MXjsFyjtg%3D%3D
- NL Kelleher HY Lin GA Valaskovic DJ Aaserud EK Fridriksson FW McLafferty 1999 Top-down versus bottom-up protein characterization by tandem high resolution mass spectrometry J Am Chem Soc 121 806 812 1:CAS:528: DyaK1MXjsFyjtg%3D%3D
- (1999) J Am Chem Soc , vol.121 , pp. 806-812
- Kelleher, N.L.¹ Lin, H.Y.² Valaskovic, G.A.³ Aaserud, D.J.⁴ Fridriksson, E.K.⁵ McLafferty, F.W.⁶

64
- 34247354641
- Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry
- DOI 10.1021/ac061455v
- J Khatun K Ramkissoon MC Giddings 2007 Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry Anal Chem 79 3032 3040 17367113 1:CAS:528:DC%2BD2sXivFyqu7s%3D (Pubitemid 46640524)
- (2007) Analytical Chemistry , vol.79 , Issue.8 , pp. 3032-3040
- Khatun, J.¹ Ramkissoon, K.² Giddings, M.C.³

65
- 4444236919
- Phosphoric acid as a matrix additive for MALDI MS analysis of phosphopeptides and phosphoproteins
- DOI 10.1021/ac0400257
- S Kjellström ON Jensen 2004 Phosphoric acid as a matrix additive for MALDI MS analysis of phosphopeptides and phosphoproteins Anal Chem 76 5109 5117 15373450 (Pubitemid 39180341)
- (2004) Analytical Chemistry , vol.76 , Issue.17 , pp. 5109-5117
- Kjellstrtom, S.¹ Jensen, O.N.²

66
- 0033214277
- The dominance of arginine-containing peptides in MALDI-derived tryptic mass fingerprints of proteins
- DOI 10.1021/ac990298f
- E Krause H Wenschuh PR Jungblut 1999 The dominance of arginine-containing peptides in MALDI-derived tryptic mass fingerprints of proteins Anal Chem 71 4160 4165 10517141 1:CAS:528:DyaK1MXlsVKltLw%3D (Pubitemid 29466391)
- (1999) Analytical Chemistry , vol.71 , Issue.19 , pp. 4160-4165
- Krause, E.¹ Wenschuh, H.² Jungblut, P.R.³

67
- 65449162340
- Less common applications of monoliths: IV. Recent developments in immobilized enzyme reactors for proteomics and biotechnology
- 19194973 1:CAS:528:DC%2BD1MXktlShs7Y%3D
- J Krenkova F Svec 2009 Less common applications of monoliths: IV. Recent developments in immobilized enzyme reactors for proteomics and biotechnology J Sep Sci 32 706 718 19194973 1:CAS:528:DC%2BD1MXktlShs7Y%3D
- (2009) J Sep Sci , vol.32 , pp. 706-718
- Krenkova, J.¹ Svec, F.²

68
- 70349923633
- B. Subtilis ribosomal proteins: Structural homology and post-translational modifications
- 19653700 1:CAS:528:DC%2BD1MXhtVWkurjF
- MA Lauber WE Running JP Reilly 2009 B. subtilis ribosomal proteins: structural homology and post-translational modifications J Proteome Res 8 4193 4206 19653700 1:CAS:528:DC%2BD1MXhtVWkurjF
- (2009) J Proteome Res , vol.8 , pp. 4193-4206
- Lauber, M.A.¹ Running, W.E.² Reilly, J.P.³

69
- 65949090291
- Centrifugal methods and devices for rapid in-gel digestion of proteins
- 19309014 1:CAS:528:DC%2BD1MXkslCltLY%3D
- AV Lazarev T Rejtar S Dai BL Karger 2009 Centrifugal methods and devices for rapid in-gel digestion of proteins Electrophoresis 30 966 973 19309014 1:CAS:528:DC%2BD1MXkslCltLY%3D
- (2009) Electrophoresis , vol.30 , pp. 966-973
- Lazarev, A.V.¹ Rejtar, T.² Dai, S.³ Karger, B.L.⁴

70
- 0035891161
- Chemical cleavage at aspartyl residues for protein identification
- DOI 10.1021/ac010619z
- A Li RC Sowder LE Henderson SP Moore DJ Garfinkel RJ Fisher 2001 Chemical cleavage at aspartyl residues for protein identification Anal Chem 73 5395 5402 11816565 1:CAS:528:DC%2BD3MXntlWku7Y%3D (Pubitemid 33108547)
- (2001) Analytical Chemistry , vol.73 , Issue.22 , pp. 5395-5402
- Li, A.¹ Sowder II, R.C.² Henderson, L.E.³ Moore, S.P.⁴ Garfinkel, D.J.⁵ Fisher, R.J.⁶

71
- 84984080135
- Collisional effects on the charge distribution of ions from large molecules, formed by electrospray-ionization mass spectrometry
- 1:CAS:528:DyaL1MXlsV2rsrk%3D
- JA Loo HR Udseth RD Smith 1988 Collisional effects on the charge distribution of ions from large molecules, formed by electrospray-ionization mass spectrometry Rapid Commun Mass Spectrom 2 207 210 1:CAS:528: DyaL1MXlsV2rsrk%3D
- (1988) Rapid Commun Mass Spectrom , vol.2 , pp. 207-210
- Loo, J.A.¹ Udseth, H.R.² Smith, R.D.³

72
- 0014591458
- Mass-spectrometric determination of the amino acid sequences in peptides isolated from the protein silk fibroin of Bombyx mori
- 5343769 1:STN:280:DyaE3c%2Fgs1eksA%3D%3D
- F Lucas M Barber WA Wolstenholme AJ Geddes GN Graham HR Morris 1969 Mass-spectrometric determination of the amino acid sequences in peptides isolated from the protein silk fibroin of Bombyx mori Biochem J 114 695 702 5343769 1:STN:280:DyaE3c%2Fgs1eksA%3D%3D
- (1969) Biochem J , vol.114 , pp. 695-702
- Lucas, F.¹ Barber, M.² Wolstenholme, W.A.³ Geddes, A.J.⁴ Graham, G.N.⁵ Morris, H.R.⁶

73
- 57649089547
- Recent advances in immobilized enzymatic reactors and their applications in proteome analysis
- 19100875 1:CAS:528:DC%2BD1cXhsFagt7fP
- J Ma L Zhang Z Liang W Zhang Y Zhang 2009 Recent advances in immobilized enzymatic reactors and their applications in proteome analysis Anal Chim Acta 632 1 8 19100875 1:CAS:528:DC%2BD1cXhsFagt7fP
- (2009) Anal Chim Acta , vol.632 , pp. 1-8
- Ma, J.¹ Zhang, L.² Liang, Z.³ Zhang, W.⁴ Zhang, Y.⁵

74
- 18444391517
- Shotgun identification of protein modifications from protein complexes and lens tissue
- DOI 10.1073/pnas.122231399
- MJ MacCoss WH McDonald A Saraf R Sadygov JM Clark JJ Tasto KL Gould D Wolters M Washburn A Weiss JI Clark JR Yates 3rd 2002 Shotgun identification of protein modifications from protein complexes and lens tissue Proc Natl Acad Sci USA 99 7900 7905 12060738 1:CAS:528:DC%2BD38XkvVGjsbg%3D (Pubitemid 34650977)
- (2002) Proceedings of the National Academy of Sciences of the United States of America , vol.99 , Issue.12 , pp. 7900-7905
- MacCoss, M.J.¹ McDonald, W.H.² Saraf, A.³ Sadygov, R.⁴ Clark, J.M.⁵ Tasto, J.J.⁶ Gould, K.L.⁷ Wolters, D.⁸ Washburn, M.⁹ Weiss, A.¹⁰ Clark, J.I.¹¹ Yates III, J.R.¹²

75
- 33646899550
- 3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer
- DOI 10.1074/mcp.T500042-MCP200
- B Macek LF Waanders JV Olsen M Mann 2006 Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer Mol Cell Proteomics 5 949 958 16478717 1:CAS:528:DC%2BD28XkslCls7s%3D (Pubitemid 43792803)
- (2006) Molecular and Cellular Proteomics , vol.5 , Issue.5 , pp. 949-958
- Macek, B.¹ Waanders, L.F.² Olsen, J.V.³ Mann, M.⁴

76
- 0041408938
- Electrostatic axially harmonic orbital trapping: A high-performance technique of mass analysis
- DOI 10.1021/ac991131p
- A Makarov 2000 Electrostatic axially harmonic orbital trapping: a high-performance technique of mass analysis Anal Chem 72 1156 1162 10740853 1:CAS:528:DC%2BD3cXpsVKlsQ%3D%3D (Pubitemid 30163769)
- (2000) Analytical Chemistry , vol.72 , Issue.6 , pp. 1156-1162
- Makarov, A.¹

77
- 33846133955
- Computational prediction of proteotypic peptides for quantitative proteomics
- DOI 10.1038/nbt1275, PII NBT1275
- P Mallick M Schirle SS Chen MR Flory H Lee D Martin J Ranish B Raught R Schmitt T Werner B Kuster R Aebersold 2007 Computational prediction of proteotypic peptides for quantitative proteomics Nat Biotechnol 25 125 131 17195840 1:CAS:528:DC%2BD2sXis1GrtA%3D%3D (Pubitemid 46098780)
- (2007) Nature Biotechnology , vol.25 , Issue.1 , pp. 125-131
- Mallick, P.¹ Schirle, M.² Chen, S.S.³ Flory, M.R.⁴ Lee, H.⁵ Martin, D.⁶ Ranish, J.⁷ Raught, B.⁸ Schmitt, R.⁹ Werner, T.¹⁰ Kuster, B.¹¹ Aebersold, R.¹²

78
- 57449099068
- Precision proteomics: The case for high resolution and high mass accuracy
- 18818311 1:CAS:528:DC%2BD1cXhsVOmsb7K
- M Mann NL Kelleher 2008 Precision proteomics: the case for high resolution and high mass accuracy Proc Natl Acad Sci USA 105 18132 18138 18818311 1:CAS:528:DC%2BD1cXhsVOmsb7K
- (2008) Proc Natl Acad Sci USA , vol.105 , pp. 18132-18138
- Mann, M.¹ Kelleher, N.L.²

79
- 30744460403
- Integration of multidimensional chromatographic protein separations with a combined "top-down" and "bottom-up" proteomic strategy
- DOI 10.1021/pr050278w
- Millea KM, Krull IS, Cohen SA, Gebler JC, Berger SJ (2006) Integration of multidimensional chromatographic protein separations with a combined "top-down" and "bottom-up" proteomic strategy. J Proteome Res 5:135-146 (Pubitemid 43100805)
- (2006) Journal of Proteome Research , vol.5 , Issue.1 , pp. 135-146
- Millea, K.M.¹ Krull, I.S.² Cohen, S.A.³ Gebler, J.C.⁴ Berger, S.J.⁵

80
- 60649112096
- Comparison of electrospray and matrix-assisted laser desorption ionization on the same hybrid quadrupole time-of-flight tandem mass spectrometer: Application to bidimensional liquid chromatography of proteins from bovine milk fraction
- 19174304 1:CAS:528:DC%2BD1MXis1GksL8%3D
- D Molle J Jardin M Piot M Pasco J Leonil V Gagnaire 2009 Comparison of electrospray and matrix-assisted laser desorption ionization on the same hybrid quadrupole time-of-flight tandem mass spectrometer: application to bidimensional liquid chromatography of proteins from bovine milk fraction J Chromatogr A 1216 2424 2432 19174304 1:CAS:528:DC%2BD1MXis1GksL8%3D
- (2009) J Chromatogr A , vol.1216 , pp. 2424-2432
- Molle, D.¹ Jardin, J.² Piot, M.³ Pasco, M.⁴ Leonil, J.⁵ Gagnaire, V.⁶

81
- 0015983568
- Dihydrofolate reductase: Low-resolution mass-spectrometric analysis of an elastase digest as a sequencing tool
- 4207389 1:CAS:528:DyaE2cXktVSksrg%3D
- HR Morris KE Batley NC Harding RA Bjur JG Dann RW King 1974 Dihydrofolate reductase: low-resolution mass-spectrometric analysis of an elastase digest as a sequencing tool Biochem J 137 409 411 4207389 1:CAS:528:DyaE2cXktVSksrg%3D
- (1974) Biochem J , vol.137 , pp. 409-411
- Morris, H.R.¹ Batley, K.E.² Harding, N.C.³ Bjur, R.A.⁴ Dann, J.G.⁵ King, R.W.⁶

82
- 0028784498
- Characterization of a thermostable lysine-specific metalloendopeptidase from the fruiting bodies of a basidiomycete, Grifola frondosa
- 8749321 1:CAS:528:DyaK2MXhtVSktL3L
- T Nonaka H Ishikawa Y Tsumuraya Y Hashimoto N Dohmae 1995 Characterization of a thermostable lysine-specific metalloendopeptidase from the fruiting bodies of a basidiomycete, Grifola frondosa J Biochem 118 1014 1020 8749321 1:CAS:528:DyaK2MXhtVSktL3L
- (1995) J Biochem , vol.118 , pp. 1014-1020
- Nonaka, T.¹ Ishikawa, H.² Tsumuraya, Y.³ Hashimoto, Y.⁴ Dohmae, N.⁵

83
- 77952052893
- Peptide mass fingerprinting after less specific in-gel proteolysis using MALDI-LTQ-Orbitrap and 4-chloro-alpha-cyanocinnamic acid
- 20364821 1:CAS:528:DC%2BC3cXksF2murc%3D
- DG Papasotiriou TW Jaskolla S Markoutsa D Baeumlisberger M Karas B Meyer 2010 Peptide mass fingerprinting after less specific in-gel proteolysis using MALDI-LTQ-Orbitrap and 4-chloro-alpha-cyanocinnamic acid J Proteome Res 9 2619 2629 20364821 1:CAS:528:DC%2BC3cXksF2murc%3D
- (2010) J Proteome Res , vol.9 , pp. 2619-2629
- Papasotiriou, D.G.¹ Jaskolla, T.W.² Markoutsa, S.³ Baeumlisberger, D.⁴ Karas, M.⁵ Meyer, B.⁶

84
- 69249222678
- Membrane proteins and proteomics: Love is possible, but so difficult
- 19517508
- T Rabilloud 2009 Membrane proteins and proteomics: love is possible, but so difficult Electrophoresis 30 S174 S180 19517508
- (2009) Electrophoresis , vol.30
- Rabilloud, T.¹

85
- 69849103563
- Power and limitations of electrophoretic separations in proteomics strategies
- 19072760 1:CAS:528:DC%2BD1MXhtFaisbzP
- T Rabilloud AR Vaezzadeh N Potier C Lelong E Leize-Wagner M Chevallet 2009 Power and limitations of electrophoretic separations in proteomics strategies Mass Spectrom Rev 28 816 843 19072760 1:CAS:528:DC%2BD1MXhtFaisbzP
- (2009) Mass Spectrom Rev , vol.28 , pp. 816-843
- Rabilloud, T.¹ Vaezzadeh, A.R.² Potier, N.³ Lelong, C.⁴ Leize-Wagner, E.⁵ Chevallet, M.⁶

86
- 53149094669
- Chemical cleavage of bovine β-lactoglobulin by BNPS-skatole for preparative purposes: Comparative study of hydrolytic procedures and peptide characterization
- V Rahali J Gueguen 1999 Chemical cleavage of bovine B-lactoglobulin by BNPSSkatole for preparative purposes: comparative study of hydrolytic procedures and peptide characterization J Protein Chem 18 1 12 10071923 1:CAS:528:DyaK1MXhsFSmsLw%3D (Pubitemid 29117419)
- (1999) Journal of Protein Chemistry , vol.18 , Issue.1 , pp. 1-12
- Rahali, V.¹ Gueguen, J.²

87
- 72849115572
- Development of a microfluidic-based gel protein recovery system
- 19960466 1:CAS:528:DC%2BD1MXhsFakurjL
- TT Razunguzwa A Biddle H Anderson D Zhan M Powell 2009 Development of a microfluidic-based gel protein recovery system Electrophoresis 30 4020 4028 19960466 1:CAS:528:DC%2BD1MXhsFakurjL
- (2009) Electrophoresis , vol.30 , pp. 4020-4028
- Razunguzwa, T.T.¹ Biddle, A.² Anderson, H.³ Zhan, D.⁴ Powell, M.⁵

88
- 70349758442
- Acid hydrolysis of proteins in matrix assisted laser desorption ionization matrices
- 19679491 1:CAS:528:DC%2BD1MXht1ylsb3N
- E Remily-Wood H Dirscherl JM Koomen 2009 Acid hydrolysis of proteins in matrix assisted laser desorption ionization matrices J Am Soc Mass Spectrom 20 2106 2115 19679491 1:CAS:528:DC%2BD1MXht1ylsb3N
- (2009) J Am Soc Mass Spectrom , vol.20 , pp. 2106-2115
- Remily-Wood, E.¹ Dirscherl, H.² Koomen, J.M.³

89
- 67449086116
- Elastase digests: New ammunition for shotgun membrane proteomics
- 19116210 1:CAS:528:DC%2BD1MXmtlGqtb8%3D
- B Rietschel TN Arrey B Meyer S Bornemann M Schuerken M Karas A Poetsch 2009 Elastase digests: new ammunition for shotgun membrane proteomics Mol Cell Proteomics 8 1029 1043 19116210 1:CAS:528:DC%2BD1MXmtlGqtb8%3D
- (2009) Mol Cell Proteomics , vol.8 , pp. 1029-1043
- Rietschel, B.¹ Arrey, T.N.² Meyer, B.³ Bornemann, S.⁴ Schuerken, M.⁵ Karas, M.⁶ Poetsch, A.⁷

90
- 73149094295
- Membrane protein analysis using an improved peptic in-solution digestion protocol
- 20017156 1:CAS:528:DC%2BD1MXhsF2isbrF
- B Rietschel S Bornemann TN Arrey D Baeumlisberger M Karas B Meyer 2009 Membrane protein analysis using an improved peptic in-solution digestion protocol Proteomics 9 5553 5557 20017156 1:CAS:528:DC%2BD1MXhsF2isbrF
- (2009) Proteomics , vol.9 , pp. 5553-5557
- Rietschel, B.¹ Bornemann, S.² Arrey, T.N.³ Baeumlisberger, D.⁴ Karas, M.⁵ Meyer, B.⁶

91
- 70449354921
- The benefit of combining nLC-MALDI-Orbitrap MS data with nLC-MALDI-TOF/TOF data for proteomic analyses employing elastase
- 19725589 1:CAS:528:DC%2BD1MXhtF2ltbfM
- B Rietschel D Baeumlisberger TN Arrey S Bornemann M Rohmer M Schuerken M Karas B Meyer 2009 The benefit of combining nLC-MALDI-Orbitrap MS data with nLC-MALDI-TOF/TOF data for proteomic analyses employing elastase J Proteome Res 8 5317 5324 19725589 1:CAS:528:DC%2BD1MXhtF2ltbfM
- (2009) J Proteome Res , vol.8 , pp. 5317-5324
- Rietschel, B.¹ Baeumlisberger, D.² Arrey, T.N.³ Bornemann, S.⁴ Rohmer, M.⁵ Schuerken, M.⁶ Karas, M.⁷ Meyer, B.⁸

92
- 17244367596
- Proteome analysis in the clinical chemistry laboratory: Myth or reality?
- DOI 10.1016/j.cccn.2005.03.018, PII S0009898105001890, Clinical Proteomics: Translation of New Insights into Clinical Practice
- PG Righetti A Castagna F Antonucci C Piubelli D Cecconi N Campostrini C Rustichelli P Antonioli G Zanusso S Monaco L Lomas E Boschetti 2005 Proteome analysis in the clinical chemistry laboratory: myth or reality? Clin Chim Acta 357 123 139 15970281 1:CAS:528:DC%2BD2MXlslynu70%3D (Pubitemid 40894637)
- (2005) Clinica Chimica Acta , vol.357 , Issue.2 , pp. 123-139
- Righetti, P.G.¹ Castagna, A.² Antonucci, F.³ Piubelli, C.⁴ Cecconi, D.⁵ Campostrini, N.⁶ Rustichelli, C.⁷ Antonioli, P.⁸ Zanusso, G.⁹ Monaco, S.¹⁰ Lomas, L.¹¹ Boschetti, E.¹²

93
- 13844276803
- Prefractionation techniques in proteome analysis: The mining tools of the third millennium
- DOI 10.1002/elps.200406189
- PG Righetti A Castagna P Antonioli E Boschetti 2005 Prefractionation techniques in proteome analysis: the mining tools of the third millennium Electrophoresis 26 297 319 15657944 1:CAS:528:DC%2BD2MXhtFyitbY%3D (Pubitemid 40253785)
- (2005) Electrophoresis , vol.26 , Issue.2 , pp. 297-319
- Righetti, P.G.¹ Castagna, A.² Antonioli, P.³ Boschetti, E.⁴

94
- 0036211004
- Protein purification by off-gel electrophoresis
- DOI 10.1002/1615-9861(200202)2:2<151::AID-PROT151>3.0.CO;2-9
- A Ros M Faupel H Mees J van Oostrum R Ferrigno F Reymond P Michel JS Rossier HH Girault 2002 Protein purification by off-gel electrophoresis Proteomics 2 151 156 11840561 1:CAS:528:DC%2BD38XhsVKgsbY%3D (Pubitemid 34273084)
- (2002) Proteomics , vol.2 , Issue.2 , pp. 151-156
- Ros, A.¹ Faupel, M.² Mees, H.³ Van Oostrum, J.⁴ Ferrigno, R.⁵ Reymond, F.⁶ Michel, P.⁷ Rossier, J.S.⁸ Girault, H.H.⁹

95
- 19944432197
- Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
- 15385600 1:CAS:528:DC%2BD2MXhvFartg%3D%3D
- PL Ross YN Huang JN Marchese B Williamson K Parker S Hattan N Khainovski S Pillai S Dey S Daniels S Purkayastha P Juhasz S Martin M Bartlet-Jones F He A Jacobson DJ Pappin 2004 Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents Mol Cell Proteomics 3 1154 1169 15385600 1:CAS:528:DC%2BD2MXhvFartg%3D%3D
- (2004) Mol Cell Proteomics , vol.3 , pp. 1154-1169
- Ross, P.L.¹ Huang, Y.N.² Marchese, J.N.³ Williamson, B.⁴ Parker, K.⁵ Hattan, S.⁶ Khainovski, N.⁷ Pillai, S.⁸ Dey, S.⁹ Daniels, S.¹⁰ Purkayastha, S.¹¹ Juhasz, P.¹² Martin, S.¹³ Bartlet-Jones, M.¹⁴ He, F.¹⁵ Jacobson, A.¹⁶ Pappin, D.J.¹⁷

96
- 77951839609
- Post-translational modifications of integral membrane proteins resolved by top-down Fourier-transform mass spectrometry with collisionally activated dissociation
- Ryan CM, Souda P, Bassilian S, Ujwal R, Zhang J, Abramson J, Ping P, Durazo A, Bowie JU, Hasan S, Baniulis D, Cramer WA, Faull KF, Whitelegge JP (2010) Post-translational modifications of integral membrane proteins resolved by top-down Fourier-transform mass spectrometry with collisionally activated dissociation. Mol Cell Proteomics 9:791-803
- (2010) Mol Cell Proteomics , vol.9 , pp. 791-803
- Ryan, C.M.¹ Souda, P.² Bassilian, S.³ Ujwal, R.⁴ Zhang, J.⁵ Abramson, J.⁶ Ping, P.⁷ Durazo, A.⁸ Bowie, J.U.⁹ Hasan, S.¹⁰ Baniulis, D.¹¹ Cramer, W.A.¹² Faull, K.F.¹³ Whitelegge, J.P.¹⁴

97
- 0034066471
- Membrane proteins and proteomics: Un amour impossible?
- DOI 10.1002/(SICI)1522-2683(20000401)21:6<1054::AID-ELPS1054>3.0. CO;2-8
- V Santoni M Molloy T Rabilloud 2000 Membrane proteins and proteomics: un amour impossible? Electrophoresis 21 1054 1070 10786880 1:CAS:528: DC%2BD3cXis12kurk%3D (Pubitemid 30230772)
- (2000) Electrophoresis , vol.21 , Issue.6 , pp. 1054-1070
- Santoni, V.¹ Molloy, M.² Rabilloud, T.³

98
- 44949150382
- High-performance mass spectrometry: Fourier transform ion cyclotron resonance at 14.5 Tesla
- DOI 10.1021/ac800386h
- TM Schaub CL Hendrickson S Horning JP Quinn MW Senko AG Marshall 2008 High-performance mass spectrometry: Fourier transform ion cyclotron resonance at 14.5 Tesla Anal Chem 80 3985 3990 18465882 1:CAS:528:DC%2BD1cXlslOjtL4%3D (Pubitemid 351812746)
- (2008) Analytical Chemistry , vol.80 , Issue.11 , pp. 3985-3990
- Schaub, T.M.¹ Hendrickson, C.L.² Horning, S.³ Quinn, J.P.⁴ Senko, M.W.⁵ Marshall, A.G.⁶

99
- 0035863653
- Analysis of protein phosphorylation by a combination of elastase digestion and neutral loss tandem mass spectrometry
- DOI 10.1021/ac000826j
- A Schlosser R Pipkorn D Bossemeyer WD Lehmann 2001 Analysis of protein phosphorylation by a combination of elastase digestion and neutral loss tandem mass spectrometry Anal Chem 73 170 176 11199962 1:CAS:528:DC%2BD3cXos1ajt7w%3D (Pubitemid 32061825)
- (2001) Analytical Chemistry , vol.73 , Issue.2 , pp. 170-176
- Schlosser, A.¹ Pipkom, R.² Bossemeyer, D.³ Lehmann, W.D.⁴

100
- 0035997277
- Identification of protein phosphorylation sites by combination of elastase digestion, immobilized metal affinity chromatography, and quadrupole-time of flight tandem mass spectrometry
- DOI 10.1002/1615-9861(200207)2:7<911::AID-PROT911>3.0.CO;2-K
- A Schlosser J Bodem D Bossemeyer I Grummt WD Lehmann 2002 Identification of protein phosphorylation sites by combination of elastase digestion, immobilized metal affinity chromatography, and quadrupole-time of flight tandem mass spectrometry Proteomics 2 911 918 12124936 1:CAS:528:DC%2BD38XlslOnsbw%3D (Pubitemid 34803974)
- (2002) Proteomics , vol.2 , Issue.7 , pp. 911-918
- Schlosser, A.¹ Bodem, J.² Bossemeyer, D.³ Grummt, I.⁴ Lehmann, W.D.⁵

101
- 23744504888
- Mapping of phosphorylation sites by a multi-protease approach with specific phosphopeptide enrichment and NanoLC-MS/MS analysis
- DOI 10.1021/ac050232m
- A Schlosser JT Vanselow A Kramer 2005 Mapping of phosphorylation sites by a multi-protease approach with specific phosphopeptide enrichment and NanoLC-MS/MS analysis Anal Chem 77 5243 5250 16097765 1:CAS:528: DC%2BD2MXlvF2isrg%3D (Pubitemid 41140842)
- (2005) Analytical Chemistry , vol.77 , Issue.16 , pp. 5243-5250
- Schlosser, A.¹ Vanselow, J.T.² Kramer, A.³

102
- 70350519351
- Finding one's way in proteomics: A protein species nomenclature
- H Schlüter R Apweiler HG Holzhütter PR Jungblut 2008 Finding one's way in proteomics: a protein species nomenclature Chem Cent J 3 11
- (2008) Chem Cent J , vol.3 , pp. 11
- Schlüter, H.¹ Apweiler, R.² Holzhütter, H.G.³ Jungblut, P.R.⁴

103
- 0037938137
- Specificity of the cleavage of proteins by dilute acid. I. Release of aspartic acid from insulin, ribonuclease, and glucagon
- 13909510 1:CAS:528:DyaF38XksFSrs7o%3D
- J Schultz H Allison M Grice 1962 Specificity of the cleavage of proteins by dilute acid. I. Release of aspartic acid from insulin, ribonuclease, and glucagon Biochemistry 1 694 698 13909510 1:CAS:528:DyaF38XksFSrs7o%3D
- (1962) Biochemistry , vol.1 , pp. 694-698
- Schultz, J.¹ Allison, H.² Grice, M.³

104
- 33847393182
- Proteomic profiling of intact proteins using WAX-RPLC 2-D separations and FTICR mass spectrometry
- DOI 10.1021/pr060354a
- S Sharma DC Simpson N Tolic N Jaitly AM Mayampurath RD Smith L Pasa-Tolic 2007 Proteomic profiling of intact proteins using WAX-RPLC 2-D separations and FTICR mass spectrometry J Proteome Res 6 602 610 17269717 1:CAS:528: DC%2BD28XhtlCrs7rO (Pubitemid 46340164)
- (2007) Journal of Proteome Research , vol.6 , Issue.2 , pp. 602-610
- Sharma, S.¹ Simpson, D.C.² Tolic, N.³ Jaitly, N.⁴ Mayampurath, A.M.⁵ Smith, R.D.⁶ Pasa-Tolic, L.⁷

105
- 34548178909
- In-gel digestion for mass spectrometric characterization of proteins and proteomes
- 17406544 1:CAS:528:DC%2BD2sXhtFGjt7nM
- A Shevchenko H Tomas J Havlis JV Olsen M Mann 2006 In-gel digestion for mass spectrometric characterization of proteins and proteomes Nat Protoc 1 2856 2860 17406544 1:CAS:528:DC%2BD2sXhtFGjt7nM
- (2006) Nat Protoc , vol.1 , pp. 2856-2860
- Shevchenko, A.¹ Tomas, H.² Havlis, J.³ Olsen, J.V.⁴ Mann, M.⁵

106
- 0029888577
- Novel acrylamido monomers with higher hydrophilicity and improved hydrolytic stability: I. Synthetic route and product characterization
- DOI 10.1002/elps.1150170418
- E Simo-Alfonso C Gelfi R Sebastiano A Citterio PG Righetti 1996 Novel acrylamido monomers with higher hydrophilicity and improved hydrolytic stability: I. Synthetic route and product characterization Electrophoresis 17 723 731 8738335 1:CAS:528:DyaK28XjvVajt7s%3D (Pubitemid 26158537)
- (1996) Electrophoresis , vol.17 , Issue.4 , pp. 723-731
- Simo-Alfonso, E.¹ Gelfi, C.² Sebastiano, R.³ Citterio, A.⁴ Righetti, P.G.⁵

107
- 0029658953
- Novel acrylamido monomers with higher hydrophilicity and improved hydrolytic stability: II. Properties of N-acryloylaminopropanol
- 8738336 1:CAS:528:DyaK28XjvVajt7g%3D
- E Simo-Alfonso C Gelfi R Sebastiano A Citterio PG Righetti 1996 Novel acrylamido monomers with higher hydrophilicity and improved hydrolytic stability: II. Properties of N-acryloylaminopropanol Electrophoresis 17 732 737 8738336 1:CAS:528:DyaK28XjvVajt7g%3D
- (1996) Electrophoresis , vol.17 , pp. 732-737
- Simo-Alfonso, E.¹ Gelfi, C.² Sebastiano, R.³ Citterio, A.⁴ Righetti, P.G.⁵

108
- 33745954137
- Using size exclusion chromatography-RPLC and RPLC-CIEF as two-dimensional separation strategies for protein profiling
- DOI 10.1002/elps.200600037
- DC Simpson S Ahn L Pasa-Tolic B Bogdanov HM Mottaz AN Vilkov GA Anderson MS Lipton RD Smith 2006 Using size exclusion chromatography-RPLC and RPLC-CIEF as two-dimensional separation strategies for protein profiling Electrophoresis 27 2722 2733 16732621 1:CAS:528:DC%2BD28XnslCntrY%3D (Pubitemid 44057522)
- (2006) Electrophoresis , vol.27 , Issue.13 , pp. 2722-2733
- Simpson, D.C.¹ Ahn, S.² Pasa-Tolic, L.³ Bogdanov, B.⁴ Mottaz, H.M.⁵ Vilkov, A.N.⁶ Anderson, G.A.⁷ Lipton, M.S.⁸ Smith, R.D.⁹

109
- 52449132322
- Is there a code embedded in proteins that is based on post-translational modifications?
- 18784729 1:CAS:528:DC%2BD1cXhtFGhsLrN
- RJ Sims 3rd D Reinberg 2008 Is there a code embedded in proteins that is based on post-translational modifications? Nat Rev Mol Cell Biol 9 815 820 18784729 1:CAS:528:DC%2BD1cXhtFGhsLrN
- (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 815-820
- Sims III, R.J.¹ Reinberg, D.²

110
- 1842853774
- Chemical cleavage of polypeptides
- 12489421 1:CAS:528:DC%2BD38XptlensL8%3D
- BJ Smith 2003 Chemical cleavage of polypeptides Methods Mol Biol 211 63 82 12489421 1:CAS:528:DC%2BD38XptlensL8%3D
- (2003) Methods Mol Biol , vol.211 , pp. 63-82
- Smith, B.J.¹

111
- 34548202704
- Proteomics of integral membrane proteins - Theory and application
- DOI 10.1021/cr068286z
- AE Speers CC Wu 2007 Proteomics of integral membrane proteins-theory and application Chem Rev 107 3687 3714 17683161 1:CAS:528:DC%2BD2sXos1egs7o%3D (Pubitemid 47322748)
- (2007) Chemical Reviews , vol.107 , Issue.8 , pp. 3687-3714
- Speers, A.E.¹ Wu, C.C.²

112
- 0002844767
- Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies
- 19499040 1:STN:280:DC%2BD1Mzps1KltQ%3D%3D
- K Speicher O Kolbas S Harper D Speicher 2000 Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies J Biomol Tech 11 74 86 19499040 1:STN:280: DC%2BD1Mzps1KltQ%3D%3D
- (2000) J Biomol Tech , vol.11 , pp. 74-86
- Speicher, K.¹ Kolbas, O.² Harper, S.³ Speicher, D.⁴

113
- 70449574685
- Immobilized monolithic enzyme reactors for application in proteomics and pharmaceutics
- 19669640 1:CAS:528:DC%2BD1MXps12gtbc%3D
- J Spross A Sinz 2009 Immobilized monolithic enzyme reactors for application in proteomics and pharmaceutics Anal Bioanal Chem 395 1583 1588 19669640 1:CAS:528:DC%2BD1MXps12gtbc%3D
- (2009) Anal Bioanal Chem , vol.395 , pp. 1583-1588
- Spross, J.¹ Sinz, A.²

114
- 76849103926
- A capillary monolithic trypsin reactor for efficient protein digestion in online and offline coupling to ESI and MALDI mass spectrometry
- 20099804 1:CAS:528:DC%2BC3cXptlOktw%3D%3D
- J Spross A Sinz 2010 A capillary monolithic trypsin reactor for efficient protein digestion in online and offline coupling to ESI and MALDI mass spectrometry Anal Chem 82 1434 1443 20099804 1:CAS:528:DC%2BC3cXptlOktw%3D%3D
- (2010) Anal Chem , vol.82 , pp. 1434-1443
- Spross, J.¹ Sinz, A.²

115
- 0035226176
- 18O labeling: A tool for proteomics
- 11746917 1:CAS:528:DC%2BD38XjtVKgsA%3D%3D
- II Stewart T Thomson D Figeys 2001 18O labeling: a tool for proteomics Rapid Commun Mass Spectrom 15 2456 2465 11746917 1:CAS:528: DC%2BD38XjtVKgsA%3D%3D
- (2001) Rapid Commun Mass Spectrom , vol.15 , pp. 2456-2465
- Stewart, I.I.¹ Thomson, T.² Figeys, D.³

116
- 7044274658
- Characterization of the 70S ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach
- DOI 10.1021/pr049940z
- MB Strader NC Verberkmoes DL Tabb HM Connelly JW Barton BD Bruce DA Pelletier BH Davison RL Hettich FW Larimer GB Hurst 2004 Characterization of the 70S ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach J Proteome Res 3 965 978 15473684 1:CAS:528:DC%2BD2cXmsFCrt7o%3D (Pubitemid 39425652)
- (2004) Journal of Proteome Research , vol.3 , Issue.5 , pp. 965-978
- Strader, M.B.¹ VerBerkmoes, N.C.² Tabb, D.L.³ Connelly, H.M.⁴ Barton, J.W.⁵ Bruce, B.D.⁶ Pelletier, D.A.⁷ Davison, B.H.⁸ Hettich, R.L.⁹ Larimer, F.W.¹⁰ Hurst, G.B.¹¹

117
- 33846269339
- Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors
- DOI 10.1021/ac061457f
- DL Swaney GC McAlister M Wirtala JC Schwartz JE Syka JJ Coon 2007 Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors Anal Chem 79 477 485 17222010 1:CAS:528:DC%2BD28Xht12itbvK (Pubitemid 46110632)
- (2007) Analytical Chemistry , vol.79 , Issue.2 , pp. 477-485
- Swaney, D.L.¹ McAlister, G.C.² Wirtala, M.³ Schwartz, J.C.⁴ Syka, J.E.P.⁵ Coon, J.J.⁶

118
- 56149086397
- Decision tree-driven tandem mass spectrometry for shotgun proteomics
- 18931669 1:CAS:528:DC%2BD1cXhtlSkt77F
- DL Swaney GC McAlister JJ Coon 2008 Decision tree-driven tandem mass spectrometry for shotgun proteomics Nat Methods 5 959 964 18931669 1:CAS:528:DC%2BD1cXhtlSkt77F
- (2008) Nat Methods , vol.5 , pp. 959-964
- Swaney, D.L.¹ McAlister, G.C.² Coon, J.J.³

119
- 77949786295
- Value of using multiple proteases for large-scale mass spectrometry-based proteomics
- 20113005 1:CAS:528:DC%2BC3cXht12hs7o%3D
- DL Swaney CD Wenger JJ Coon 2010 Value of using multiple proteases for large-scale mass spectrometry-based proteomics J Proteome Res 9 1323 1329 20113005 1:CAS:528:DC%2BC3cXht12hs7o%3D
- (2010) J Proteome Res , vol.9 , pp. 1323-1329
- Swaney, D.L.¹ Wenger, C.D.² Coon, J.J.³

120
- 30044449287
- Rapid chemical digestion of small acid-soluble spore proteins for analysis of Bacillus spores
- DOI 10.1021/ac051521d
- S Swatkoski SC Russell N Edwards C Fenselau 2006 Rapid chemical digestion of small acid-soluble spore proteins for analysis of Bacillus spores Anal Chem 78 181 188 16383326 1:CAS:528:DC%2BD2MXht1KjsbvO (Pubitemid 43050153)
- (2006) Analytical Chemistry , vol.78 , Issue.1 , pp. 181-188
- Swatkoski, S.¹ Russell, S.C.² Edwards, N.³ Fenselau, C.⁴

121
- 36348932880
- Integration of residue-specific acid cleavage into proteomic workflows
- DOI 10.1021/pr0704682
- S Swatkoski P Gutierrez J Ginter A Petrov JD Dinman N Edwards C Fenselau 2007 Integration of residue-specific acid cleavage into proteomic workflows J Proteome Res 6 4525 4527 17902642 1:CAS:528:DC%2BD2sXhtFSjt7nI (Pubitemid 350158528)
- (2007) Journal of Proteome Research , vol.6 , Issue.11 , pp. 4525-4527
- Swatkoski, S.¹ Gutierrez, P.² Ginter, J.³ Petrov, A.⁴ Dinman, J.D.⁵ Edwards, N.⁶ Fenselau, C.⁷

122
- 33846240849
- Analysis of a model virus using residue-specific chemical cleavage and MALDI-TOF mass spectrometry
- DOI 10.1021/ac061493e
- S Swatkoski S Russell N Edwards C Fenselau 2007 Analysis of a model virus using residue-specific chemical cleavage and MALDI-TOF mass spectrometry Anal Chem 79 654 658 17222033 1:CAS:528:DC%2BD28Xht1WksL3K (Pubitemid 46106132)
- (2007) Analytical Chemistry , vol.79 , Issue.2 , pp. 654-658
- Swatkoski, S.¹ Russell, S.² Edwards, N.³ Fenselau, C.⁴

123
- 39749157207
- Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications
- DOI 10.1021/pr070502c
- S Swatkoski P Gutierrez C Wynne A Petrov JD Dinman N Edwards C Fenselau 2008 Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications J Proteome Res 7 579 586 18189344 1:CAS:528: DC%2BD1cXlvVSitw%3D%3D (Pubitemid 351294020)
- (2008) Journal of Proteome Research , vol.7 , Issue.2 , pp. 579-586
- Swatkoski, S.¹ Gutierrez, P.² Wynne, C.³ Petrov, A.⁴ Dinman, J.D.⁵ Edwards, N.⁶ Fenselau, C.⁷

124
- 3042789073
- Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
- DOI 10.1073/pnas.0402700101
- JEP Syka JJ Coon MJ Schroeder J Shabanowitz DF Hunt 2004 Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry Proc Natl Acad Sci USA 101 9528 9533 15210983 1:CAS:528:DC%2BD2cXlvVahs70%3D (Pubitemid 38869270)
- (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.26 , pp. 9528-9533
- Syka, J.E.P.¹ Coon, J.J.² Schroeder, M.J.³ Shabanowitz, J.⁴ Hunt, D.F.⁵

125
- 0037133237
- Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue
- DOI 10.1073/pnas.251691898
- SK Sze Y Ge H Oh FW McLafferty 2002 Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue Proc Natl Acad Sci USA 99 1774 1779 11842225 1:CAS:528:DC%2BD38XitVSkurk%3D (Pubitemid 34168966)
- (2002) Proceedings of the National Academy of Sciences of the United States of America , vol.99 , Issue.4 , pp. 1774-1779
- Sze, S.K.¹ Ge, Y.² Oh, H.³ McLafferty, F.W.⁴

126
- 42949113985
- Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase
- DOI 10.1038/nmeth.1204, PII NMETH.1204
- N Taouatas MM Drugan AJ Heck S Mohammed 2008 Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase Nat Methods 5 405 407 18425140 1:CAS:528:DC%2BD1cXlt1ahur8%3D (Pubitemid 351619098)
- (2008) Nature Methods , vol.5 , Issue.5 , pp. 405-407
- Taouatas, N.¹ Drugan, M.M.² Heck, A.J.R.³ Mohammed, S.⁴

127
- 41149161152
- Gel-eluted liquid fraction entrapment electrophoresis: An electrophoretic method for broad molecular weight range proteome separation
- DOI 10.1021/ac702197w
- JC Tran AA Doucette 2008 Gel-eluted liquid fraction entrapment electrophoresis: an electrophoretic method for broad molecular weight range proteome separation Anal Chem 80 1568 1573 18229945 1:CAS:528: DC%2BD1cXhtFCitL8%3D (Pubitemid 351429561)
- (2008) Analytical Chemistry , vol.80 , Issue.5 , pp. 1568-1573
- Tran, J.C.¹ Doucette, A.A.²

128
- 75749115991
- Matrix-assisted laser desorption/ionization mass spectrometry method for selectively producing either singly or multiply charged molecular ions
- 19904915 1:CAS:528:DC%2BD1MXhtl2qu7jE
- S Trimpin ED Inutan TN Herath CN McEwen 2010 Matrix-assisted laser desorption/ionization mass spectrometry method for selectively producing either singly or multiply charged molecular ions Anal Chem 82 11 15 19904915 1:CAS:528:DC%2BD1MXhtl2qu7jE
- (2010) Anal Chem , vol.82 , pp. 11-15
- Trimpin, S.¹ Inutan, E.D.² Herath, T.N.³ McEwen, C.N.⁴

129
- 76649107904
- Laserspray ionization, a new atmospheric pressure MALDI method for producing highly charged gas-phase ions of peptides and proteins directly from solid solutions
- 19955086 1:CAS:528:DC%2BC3cXjtFWhtr8%3D
- S Trimpin ED Inutan TN Herath CN McEwen 2010 Laserspray ionization, a new atmospheric pressure MALDI method for producing highly charged gas-phase ions of peptides and proteins directly from solid solutions Mol Cell Proteomics 9 362 367 19955086 1:CAS:528:DC%2BC3cXjtFWhtr8%3D
- (2010) Mol Cell Proteomics , vol.9 , pp. 362-367
- Trimpin, S.¹ Inutan, E.D.² Herath, T.N.³ McEwen, C.N.⁴

130
- 0026694731
- C-terminal sequencing of protein. A novel partial acid hydrolysis and analysis by mass spectrometry
- 1606956 1:CAS:528:DyaK38Xks1Kjsbo%3D
- A Tsugita K Takamoto M Kamo H Iwadate 1992 C-terminal sequencing of protein. A novel partial acid hydrolysis and analysis by mass spectrometry Eur J Biochem 206 691 696 1606956 1:CAS:528:DyaK38Xks1Kjsbo%3D
- (1992) Eur J Biochem , vol.206 , pp. 691-696
- Tsugita, A.¹ Takamoto, K.² Kamo, M.³ Iwadate, H.⁴

131
- 77949702383
- LysNDeNovo: An algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation
- van Breukelen B, Georgiou A, Drugan MM, Taouatas N, Mohammed S, Heck AJ (2010) LysNDeNovo: an algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation. Proteomics 10:1196-1201
- (2010) Proteomics , vol.10 , pp. 1196-1201
- Van Breukelen, B.¹ Georgiou, A.² Drugan, M.M.³ Taouatas, N.⁴ Mohammed, S.⁵ Heck, A.J.⁶

132
- 0037056021
- Combined in-gel tryptic digestion and CNBr cleavage for the generation of peptide maps of an integral membrane protein with MALDI-TOF mass spectrometry
- DOI 10.1016/S0005-2728(02)00264-5, PII S0005272802002645
- BA van Montfort MK Doeven B Canas LM Veenhoff B Poolman GT Robillard 2002 Combined in-gel tryptic digestion and CNBr cleavage for the generation of peptide maps of an integral membrane protein with MALDI-TOF mass spectrometry Biochim Biophys Acta 1555 111 115 12206901 (Pubitemid 35246015)
- (2002) Biochimica et Biophysica Acta - Bioenergetics , vol.1555 , Issue.1-3 , pp. 111-115
- Van Montfort, B.A.¹ Doeven, M.K.² Canas, B.³ Veenhoff, L.M.⁴ Poolman, B.⁵ Robillard, G.T.⁶

133
- 0036127937
- Improved in-gel approaches to generate peptide maps of integral membrane proteins with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
- DOI 10.1002/jms.288
- BA van Montfort B Canas R Duurkens J Godovac-Zimmermann GT Robillard 2002 Improved in-gel approaches to generate peptide maps of integral membrane proteins with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry J Mass Spectrom 37 322 330 11921374 (Pubitemid 34240318)
- (2002) Journal of Mass Spectrometry , vol.37 , Issue.3 , pp. 322-330
- Van Montfort, B.A.¹ Canas, B.² Duurkens, R.³ Godovac-Zimmermann, J.⁴ Robillard, G.T.⁵

134
- 76849109997
- Size-sorting combined with improved nanocapillary liquid chromatography-mass spectrometry for identification of intact proteins up to 80 kDa
- 20073486 1:CAS:528:DC%2BC3cXls12kuw%3D%3D
- A Vellaichamy JC Tran AD Catherman JE Lee JF Kellie SMM Sweet L Zamdborg PM Thomas DR Ahlf KR Durbin GA Valaskovic NL Kelleher 2010 Size-sorting combined with improved nanocapillary liquid chromatography-mass spectrometry for identification of intact proteins up to 80 kDa Anal Chem 82 1234 1244 20073486 1:CAS:528:DC%2BC3cXls12kuw%3D%3D
- (2010) Anal Chem , vol.82 , pp. 1234-1244
- Vellaichamy, A.¹ Tran, J.C.² Catherman, A.D.³ Lee, J.E.⁴ Kellie, J.F.⁵ Sweet, S.M.M.⁶ Zamdborg, L.⁷ Thomas, P.M.⁸ Ahlf, D.R.⁹ Durbin, K.R.¹⁰ Valaskovic, G.A.¹¹ Kelleher, N.L.¹²

135
- 0036589851
- Integrating "top-down" and "bottom-up" mass spectrometric approaches for proteomic analysis of Shewanella oneidensis
- DOI 10.1021/pr025508a
- NC VerBerkmoes JL Bundy L Hauser KG Asano J Razumovskaya F Larimer RL Hettich JL Stephenson Jr 2002 Integrating 'top-down" and "bottom-up" mass spectrometric approaches for proteomic analysis of Shewanella oneidensis J Proteome Res 1 239 252 12645901 1:CAS:528: DC%2BD38XjtFahtbo%3D (Pubitemid 36050254)
- (2002) Journal of Proteome Research , vol.1 , Issue.3 , pp. 239-252
- VerBerkmoes, N.C.¹ Bundy, J.L.² Hauser, L.³ Asano, K.G.⁴ Razumovskaya, J.⁵ Larimer, F.⁶ Hettich, R.L.⁷ Stephenson Jr., J.L.⁸

136
- 0028500564
- Optimization by mass spectrometry of a tryptophan-specific protein cleavage reaction
- MM Vestling MA Kelly C Fenselau 1994 Optimization by mass spectrometry of a tryptophan-specific protein cleavage reaction Rapid Commun Mass Spectrom 8 786 790 7949339 1:CAS:528:DyaK2cXmsFShsLw%3D (Pubitemid 2139499)
- (1994) Rapid Communications in Mass Spectrometry , vol.8 , Issue.9 , pp. 786-790
- Vestling, M.M.¹ Kelly, M.A.² Fenselau, C.³

137
- 0028170485
- Peptide sequence information derived by partial acid hydrolysis and matrix-assisted laser Desorption/Ionization mass spectrometry
- DOI 10.1002/bms.1200231204
- O Vorm P Roepstorff 1994 Peptide sequence information derived by partial acid hydrolysis and matrix-assisted laser desorption/ionization mass spectrometry Biol Mass Spectrom 23 734 740 7841208 1:CAS:528:DyaK2MXisFyktL0%3D (Pubitemid 24371751)
- (1994) Biological Mass Spectrometry , vol.23 , Issue.12 , pp. 734-740
- Vorm, O.¹ Roepstorff, P.²

138
- 0034653660
- Isoelectric focusing nonporous RP HPLC: A two-dimensional liquid-phase separation method for mapping of cellular proteins with identification using MALDI-TOF mass spectrometry
- DOI 10.1021/ac991332t
- DB Wall MT Kachman S Gong R Hinderer S Parus DE Misek SM Hanash DM Lubman 2000 Isoelectric focusing nonporous RP HPLC: a two-dimensional liquid-phase
- (2000) Analytical Chemistry , vol.72 , Issue.6 , pp. 1099-1111
- Wall, D.B.¹ Kachman, M.T.² Gong, S.³ Hinderer, R.⁴ Parus, S.⁵ Misek, D.E.⁶ Hanash, S.M.⁷ Lubman, D.M.⁸

139
- 0034806124
- Isoelectric focusing nonporous silica reversed-phase high-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry: A three-dimensional liquid-phase protein separation method as applied to the human erythroleukemia cell-line
- DOI 10.1002/rcm.421
- DB Wall MT Kachman SS Gong SJ Parus MW Long DM Lubman 2001 Isoelectric focusing nonporous silica reversed-phase high-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry: a three-dimensional liquid-phase protein separation method as applied to the human erythroleukemia cell-line Rapid Commun Mass Spectrom 15 1649 1661 11555863 1:CAS:528:DC%2BD3MXnt1Cgt74%3D (Pubitemid 32906411)
- (2001) Rapid Communications in Mass Spectrometry , vol.15 , Issue.18 , pp. 1649-1661
- Wall, D.B.¹ Kachman, M.T.² Gong, S.S.³ Parus, S.J.⁴ Long, M.W.⁵ Lubman, D.M.⁶

140
- 58149119846
- Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis
- 19007248 1:CAS:528:DC%2BD1cXhtlOitbfN
- B Wang R Malik EA Nigg R Körner 2008 Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis Anal Chem 80 9526 9533 19007248 1:CAS:528:DC%2BD1cXhtlOitbfN
- (2008) Anal Chem , vol.80 , pp. 9526-9533
- Wang, B.¹ Malik, R.² Nigg, E.A.³ Körner, R.⁴

141
- 0035106351
- Large-scale analysis of the yeast proteome by multidimensional protein identification technology
- DOI 10.1038/85686
- MP Washburn D Wolters JR Yates 3rd 2001 Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nat Biotechnol 19 242 247 11231557 1:CAS:528:DC%2BD3MXhslaqtbw%3D (Pubitemid 32220565)
- (2001) Nature Biotechnology , vol.19 , Issue.3 , pp. 242-247
- Washburn, M.P.¹ Wolters, D.² Yates, J.R.³

142
- 0029033175
- Progress with gene-product mapping of Mollicutes: Mycoplasma genitalium
- 7498152 1:CAS:528:DyaK2MXntF2lsLg%3D
- VC Wasinger SJ Cordwell A Cerpa-Poljak JX Yan AA Gooley MR Wilkins MW Duncan R Harris KL Williams I Humphrey-Smith 1995 Progress with gene-product mapping of Mollicutes: Mycoplasma genitalium Electrophoresis 16 1090 1094 7498152 1:CAS:528:DyaK2MXntF2lsLg%3D
- (1995) Electrophoresis , vol.16 , pp. 1090-1094
- Wasinger, V.C.¹ Cordwell, S.J.² Cerpa-Poljak, A.³ Yan, J.X.⁴ Gooley, A.A.⁵ Wilkins, M.R.⁶ Duncan, M.W.⁷ Harris, R.⁸ Williams, K.L.⁹ Humphrey-Smith, I.¹⁰

143
- 33845909817
- Top-down mass spectrometry of integral membrane proteins
- DOI 10.1586/14789450.3.6.585
- JP Whitelegge F Halgand P Souda V Zabrouskov 2006 Top-down mass spectrometry of integral membrane proteins Exp Rev Proteomics 3 585 596 1:CAS:528:DC%2BD2sXhvFGqtro%3D (Pubitemid 46021197)
- (2006) Expert Review of Proteomics , vol.3 , Issue.6 , pp. 585-596
- Whitelegge, J.¹ Halgand, F.² Souda, P.³ Zabrouskov, V.⁴

144
- 0030333694
- Progress with proteome projects: Why all proteins expressed by a genome should be identified and how to do it
- 8948108 1:CAS:528:DyaK28XkvVWks7s%3D
- MR Wilkins JC Sanchez AA Gooley RD Appel I Humphery-Smith DF Hochstrasser KL Williams 1996 Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it Biotechnol Genet Eng Rev 13 19 50 8948108 1:CAS:528:DyaK28XkvVWks7s%3D
- (1996) Biotechnol Genet Eng Rev , vol.13 , pp. 19-50
- Wilkins, M.R.¹ Sanchez, J.C.² Gooley, A.A.³ Appel, R.D.⁴ Humphery-Smith, I.⁵ Hochstrasser, D.F.⁶ Williams, K.L.⁷

145
- 33645839858
- STED-microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis
- 16612384 1:CAS:528:DC%2BD28XjsVWktLY%3D
- KI Willig SO Rizzoli V Westphal R Jahn SW Hell 2006 STED-microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis Nature 440 935 939 16612384 1:CAS:528:DC%2BD28XjsVWktLY%3D
- (2006) Nature , vol.440 , pp. 935-939
- Willig, K.I.¹ Rizzoli, S.O.² Westphal, V.³ Jahn, R.⁴ Hell, S.W.⁵

146
- 67349266694
- Universal sample preparation method for proteome analysis
- 19377485 1:CAS:528:DC%2BD1MXks12ksb0%3D
- JR Wisniewski A Zougman N Nagaraj M Mann 2009 Universal sample preparation method for proteome analysis Nat Methods 6 359 362 19377485 1:CAS:528:DC%2BD1MXks12ksb0%3D
- (2009) Nat Methods , vol.6 , pp. 359-362
- Wisniewski, J.R.¹ Zougman, A.² Nagaraj, N.³ Mann, M.⁴

147
- 0029918575
- A strategy to locate cysteine residues in proteins by specific chemical cleavage followed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
- 8833324 1:CAS:528:DyaK28Xhs1Wqsbk%3D
- J Wu DA Gage JT Watson 1996 A strategy to locate cysteine residues in proteins by specific chemical cleavage followed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Anal Biochem 235 161 174 8833324 1:CAS:528:DyaK28Xhs1Wqsbk%3D
- (1996) Anal Biochem , vol.235 , pp. 161-174
- Wu, J.¹ Gage, D.A.² Watson, J.T.³

148
- 0038561131
- A method for the comprehensive proteomic analysis of membrane proteins
- DOI 10.1038/nbt819
- CC Wu MJ MacCoss KE Howell JR Yates 3rd 2003 A method for the comprehensive proteomic analysis of membrane proteins Nat Biotechnol 21 532 538 12692561 1:CAS:528:DC%2BD3sXjt1Onsb4%3D (Pubitemid 36532018)
- (2003) Nature Biotechnology , vol.21 , Issue.5 , pp. 532-538
- Wu, C.C.¹ MacCoss, M.J.² Howell, K.E.³ Yates III, J.R.⁴

149
- 23944500826
- Extended Range Proteomic Analysis (ERPA): A new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and Epidermal Growth Factor Receptor (EGFR)
- DOI 10.1021/pr050113n
- SL Wu J Kim WS Hancock B Karger 2005 Extended range proteomic analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (EGFR) J Proteome Res 4 1155 1170 16083266 1:CAS:528:DC%2BD2MXltVylt78%3D (Pubitemid 41208674)
- (2005) Journal of Proteome Research , vol.4 , Issue.4 , pp. 1155-1170
- Wu, S.-L.¹ Kim, J.² Hancock, W.S.³ Karger, B.⁴

150
- 36349016738
- On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications
- DOI 10.1021/pr070313u
- SL Wu AF Hühmer Z Hao BL Karger 2007 On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications J Proteome Res 6 4230 4244 17900180 1:CAS:528:DC%2BD2sXhtV2hsb3K (Pubitemid 350158501)
- (2007) Journal of Proteome Research , vol.6 , Issue.11 , pp. 4230-4244
- Wu, S.-L.¹ Huhmer, A.F.R.² Hao, Z.³ Karger, B.L.⁴

151
- 65249157969
- An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications
- 19206473 1:CAS:528:DC%2BD1MXhs1Oit7c%3D
- S Wu NM Lourette N Tolić R Zhao EW Robinson AV Tolmachev RD Smith L Pasa-Tolić 2009 An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications J Proteome Res 8 1347 1357 19206473 1:CAS:528:DC%2BD1MXhs1Oit7c%3D
- (2009) J Proteome Res , vol.8 , pp. 1347-1357
- Wu, S.¹ Lourette, N.M.² Tolić, N.³ Zhao, R.⁴ Robinson, E.W.⁵ Tolmachev, A.V.⁶ Smith, R.D.⁷ Pasa-Tolić, L.⁸

152
- 66349135588
- Integrated workflow for characterizing intact phosphoproteins from complex mixtures
- 19425582 1:CAS:528:DC%2BD1MXls1Omtb4%3D
- S Wu F Yang R Zhao N Tolić EW Robinson DG Camp 2nd RD Smith L Pasa-Tolić 2009 Integrated workflow for characterizing intact phosphoproteins from complex mixtures Anal Chem 81 4210 4219 19425582 1:CAS:528:DC%2BD1MXls1Omtb4%3D
- (2009) Anal Chem , vol.81 , pp. 4210-4219
- Wu, S.¹ Yang, F.² Zhao, R.³ Tolić, N.⁴ Robinson, E.W.⁵ Camp II, D.G.⁶ Smith, R.D.⁷ Pasa-Tolić, L.⁸

153
- 0032087899
- Complete Amino Acid Sequences of Chitinase-1 and -2 from Bulbs of Genus Tulipa
- T Yamagami M Ishiguro 1998 Complete amino acid sequences of chitinase-1 and -2 from bulbs of genus Tulipa Biosci Biotechnol Biochem 62 1253 1257 9692212 1:CAS:528:DyaK1cXksFCisL0%3D (Pubitemid 128475008)
- (1998) Bioscience, Biotechnology and Biochemistry , vol.62 , Issue.6 , pp. 1253-1257
- Yamagami, T.¹ Ishiguro, M.²

154
- 0037953157
- A comparison of drug-treated and untreated HCT-116 human colon adenocarcinoma cells using a 2-D liquid separation mapping method based upon chromatofocusing PI fractionation
- DOI 10.1021/ac020678s
- F Yan B Subramanian A Nakeff TJ Barder SJ Parus DM Lubman 2003 A comparison of drug-treated and untreated HCT-116 human colon adenocarcinoma cells using a 2-D liquid separation mapping method based upon chromatofocusing PI fractionation Anal Chem 75 2299 2308 12918970 1:CAS:528:DC%2BD3sXisFSkurk%3D (Pubitemid 36582812)
- (2003) Analytical Chemistry , vol.75 , Issue.10 , pp. 2299-2308
- Yan, F.¹ Subramanian, B.² Nakeff, A.³ Barder, T.J.⁴ Parus, S.J.⁵ Lubman, D.M.⁶

155
- 36049014914
- A comparison of nLC-ESI-MS/MS and nLC-MALDI-MS/MS for GeLC-based protein identification and iTRAQ-based shotgun quantitative proteomics
- 17916795
- Y Yang S Zhang K Howe DB Wilson F Moser D Irwin TW Thannhauser 2007 A comparison of nLC-ESI-MS/MS and nLC-MALDI-MS/MS for GeLC-based protein identification and iTRAQ-based shotgun quantitative proteomics J Biomol Tech 18 226 237 17916795
- (2007) J Biomol Tech , vol.18 , pp. 226-237
- Yang, Y.¹ Zhang, S.² Howe, K.³ Wilson, D.B.⁴ Moser, F.⁵ Irwin, D.⁶ Thannhauser, T.W.⁷

156
- 2742513544
- Resolution requirements for middle molecule mass spectrometry
- 1:CAS:528:DyaL2cXlsVSnurg%3D
- JA Yergey RJ Cotter D Heller C Fenselau 1984 Resolution requirements for middle molecule mass spectrometry Anal Chem 56 2262 2263 1:CAS:528: DyaL2cXlsVSnurg%3D
- (1984) Anal Chem , vol.56 , pp. 2262-2263
- Yergey, J.A.¹ Cotter, R.J.² Heller, D.³ Fenselau, C.⁴

157
- 33749473661
- Automated integration of monolith-based protein separation with on-plate digestion for mass spectrometric analysis of esophageal adenocarcinoma human epithelial samples
- DOI 10.1002/elps.200600117
- C Yoo J Zhao M Pal K Hersberger CG Huber DM Simeone DG Beer DM Lubman 2006 Automated integration of monolith-based protein separation with on-plate digestion for mass spectrometric analysis of esophageal adenocarcinoma human epithelial samples Electrophoresis 27 3643 3651 16927349 1:CAS:528: DC%2BD28XhtFWgt7%2FK (Pubitemid 44515603)
- (2006) Electrophoresis , vol.27 , Issue.18 , pp. 3643-3651
- Yoo, C.¹ Zhao, J.² Pal, M.³ Hersberger, K.⁴ Huber, C.G.⁵ Simeone, D.M.⁶ Beer, D.G.⁷ Lubman, D.M.⁸

158
- 34250845945
- Increased coverage in the transmembrane domain with activated-ion electron capture dissociation for top-down fourier-transform mass spectrometry of integral membrane proteins
- DOI 10.1021/pr0607031
- V Zabrouskov JP Whitelegge 2007 Increased coverage in the transmembrane domain with activated-ion electron capture dissociation for top-down Fourier-transform mass spectrometry of integral membrane proteins J Proteome Res 6 2205 2210 17441748 1:CAS:528:DC%2BD2sXkt1yjsro%3D (Pubitemid 46985107)
- (2007) Journal of Proteome Research , vol.6 , Issue.6 , pp. 2205-2210
- Zabrouskov, V.¹ Whitelegge, J.P.²

159
- 34547595546
- ProSight PTM 2.0: Improved protein identification and characterization for top-down mass spectrometry
- 17586823
- L Zamdborg RD LeDuc KJ Glowacz YB Kim V Viswanathan IT Spaulding BP Early EJ Bluhm S Babai NL Kelleher 2007 ProSight PTM 2.0: improved protein identification and characterization for top-down mass spectrometry Nucleic Acids Res 35 W701 W706 17586823
- (2007) Nucleic Acids Res , vol.35
- Zamdborg, L.¹ Leduc, R.D.² Glowacz, K.J.³ Kim, Y.B.⁴ Viswanathan, V.⁵ Spaulding, I.T.⁶ Early, B.P.⁷ Bluhm, E.J.⁸ Babai, S.⁹ Kelleher, N.L.¹⁰

160
- 34249730998
- Ultratrace liquid chromatography/mass spectrometry analysis of large peptides with post-translational modifications using narrow-bore poly(styrene-divinylbenzene) monolithic columns and extended range proteomic analysis
- DOI 10.1016/j.chroma.2007.03.128, PII S0021967307006589
- J Zhang SL Wu J Kim BL Karger 2007 Ultratrace liquid chromatography/mass spectrometry analysis of large peptides with post-translational modifications using narrow-bore poly(styrene-divinylbenzene) monolithic columns and extended range proteomic analysis J Chromatogr A 1154 295 307 17442327 1:CAS:528:DC%2BD2sXmtFOisr0%3D (Pubitemid 46843055)
- (2007) Journal of Chromatography A , vol.1154 , Issue.1-2 , pp. 295-307
- Zhang, J.¹ Wu, S.-L.² Kim, J.³ Karger, B.L.⁴

161
- 51249121132
- Liquid chromatography electrospray ionization and matrix-assisted laser desorption ionization tandem mass spectrometry for the analysis of lipid raft proteome of monocytes
- 18790130 1:CAS:528:DC%2BD1cXhtFegtb%2FO
- N Zhang AR Shaw N Li R Chen A Mak X Hu N Young D Wishart L Li 2008 Liquid chromatography electrospray ionization and matrix-assisted laser desorption ionization tandem mass spectrometry for the analysis of lipid raft proteome of monocytes Anal Chim Acta 627 82 90 18790130 1:CAS:528:DC%2BD1cXhtFegtb%2FO
- (2008) Anal Chim Acta , vol.627 , pp. 82-90
- Zhang, N.¹ Shaw, A.R.² Li, N.³ Chen, R.⁴ Mak, A.⁵ Hu, X.⁶ Young, N.⁷ Wishart, D.⁸ Li, L.⁹

162
- 33746220173
- Monolithic column HPLC separation of intact proteins analyzed by LC-MALDI using on-plate digestion: An approach to integrate protein separation and identification
- DOI 10.1021/ac052284h
- S Zheng C Yoo N Delmotte FR Miller CG Huber DM Lubman 2006 Monolithic column HPLC separation of intact proteins analyzed by LC-MALDI using on-plate digestion: An approach to integrate protein separation and identification Anal Chem 78 5198 5204 16841948 1:CAS:528:DC%2BD28XlvVent78%3D (Pubitemid 44100660)
- (2006) Analytical Chemistry , vol.78 , Issue.14 , pp. 5198-5204
- Zheng, S.¹ Yoo, C.² Delmotte, N.³ Miller, F.R.⁴ Huber, C.G.⁵ Lubman, D.M.⁶

163
- 15744374025
- Microwave-assisted acid hydrolysis of proteins combined with liquid chromatography MALDI MS/MS for protein identification
- DOI 10.1016/j.jasms.2004.12.017, PII S1044030504008529
- H Zhong SL Marcus L Li 2005 Microwave-assisted acid hydrolysis of proteins combined with liquid chromatography MALDI MS/MS for protein identification J Am Soc Mass Spectrom 16 471 481 15792716 1:CAS:528: DC%2BD2MXisFyjtLc%3D (Pubitemid 40410033)
- (2005) Journal of the American Society for Mass Spectrometry , vol.16 , Issue.4 , pp. 471-481
- Zhong, H.¹ Marcus, S.L.² Li, L.³

164
- 0242401952
- High Sequence Coverage of Proteins Isolated from Liquid Separations of Breast Cancer Cells Using Capillary Electrophoresis-Time-of-Flight MS and MALDI-TOF MS Mapping
- DOI 10.1021/ac0346454
- K Zhu J Kim C Yoo FR Miller DM Lubman 2003 High sequence coverage of proteins isolated from liquid separations of breast cancer cells using capillary electrophoresis-time-of-flight MS and MALDI-TOF MS mapping Anal Chem 75 6209 6217 14616003 1:CAS:528:DC%2BD3sXns1Ogtr4%3D (Pubitemid 37420614)
- (2003) Analytical Chemistry , vol.75 , Issue.22 , pp. 6209-6217
- Zhu, K.¹ Kim, J.² Yoo, C.³ Miller, F.R.⁴ Lubman, D.M.⁵

165
- 0028542333
- Peptide sequencing by partial acid hydrolysis and high resolution plasma desorption mass spectrometry
- 7819601 1:CAS:528:DyaK2MXit1Kjsb4%3D
- RA Zubarev VD Chivanov P Hakansson BU Sundqvist 1994 Peptide sequencing by partial acid hydrolysis and high resolution plasma desorption mass spectrometry Rapid Commun Mass Spectrom 8 906 912 7819601 1:CAS:528: DyaK2MXit1Kjsb4%3D
- (1994) Rapid Commun Mass Spectrom , vol.8 , pp. 906-912
- Zubarev, R.A.¹ Chivanov, V.D.² Hakansson, P.³ Sundqvist, B.U.⁴

166
- 0000944563
- Electron capture dissociation of multiply charged protein cations. A nonergodic process
- 1:CAS:528:DyaK1cXhslyqt7o%3D
- RA Zubarev NL Kelleher FW McLafferty 1998 Electron capture dissociation of multiply charged protein cations. A nonergodic process J Am Chem Soc 120 3265 3266 1:CAS:528:DyaK1cXhslyqt7o%3D
- (1998) J Am Chem Soc , vol.120 , pp. 3265-3266
- Zubarev, R.A.¹ Kelleher, N.L.² McLafferty, F.W.³

167
- 77950684226
- Mass spectrometry-based GPCR proteomics: Comprehensive characterization of the human cannabinoid 1 receptor
- Zvonok N, Xu W, Williams J, Janero D, Krishnan S, Makriyannis A (2010) Mass spectrometry-based GPCR proteomics: comprehensive characterization of the human cannabinoid 1 receptor. J Proteome Res 9:1746-1753
- (2010) J Proteome Res , vol.9 , pp. 1746-1753
- Zvonok, N.¹ Xu, W.² Williams, J.³ Janero, D.⁴ Krishnan, S.⁵ Makriyannis, A.⁶

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.