-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., and Mann, M. (2003) Mass spectrometry-based proteomics. Nature 422, 198-207
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
0033898240
-
Advances in mass spectrometry for proteome analysis
-
Chalmers, M. J., and Gaskell, S. J. (2000) Advances in mass spectrometry for proteome analysis. Curr. Opin. Biotechnol. 11, 384-390
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 384-390
-
-
Chalmers, M.J.1
Gaskell, S.J.2
-
3
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
Olsen, J. V., Ong, S.-E., and Mann, M. (2004) Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol. Cell. Proteomics 3, 608-614
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.-E.2
Mann, M.3
-
4
-
-
21844457685
-
Fragmentation pathways of protonated peptides
-
Paizs, B., and Suhai, S. (2005) Fragmentation pathways of protonated peptides. Mass Spectrom. Rev. 24, 508-548
-
(2005)
Mass Spectrom. Rev.
, vol.24
, pp. 508-548
-
-
Paizs, B.1
Suhai, S.2
-
5
-
-
0000789037
-
Influence of cysteine to cysteic acid oxidation on the collision-activated decomposition of pro-tonated peptides-evidence for intraionic interactions
-
Burlet, O., Yang, C. Y., and Gaskell, S. J. (1992) Influence of cysteine to cysteic acid oxidation on the collision-activated decomposition of pro-tonated peptides-evidence for intraionic interactions. J. Am. Soc. Mass Spectrom. 3, 337-344
-
(1992)
J. Am. Soc. Mass Spectrom.
, vol.3
, pp. 337-344
-
-
Burlet, O.1
Yang, C.Y.2
Gaskell, S.J.3
-
6
-
-
0001155717
-
Proton mobility in protonated amino acids and peptides
-
Harrison, A. G., and Yalcin, T. (1997) Proton mobility in protonated amino acids and peptides. Int. J. Mass Spectrom. 165, 339-347
-
(1997)
Int. J. Mass Spectrom.
, vol.165
, pp. 339-347
-
-
Harrison, A.G.1
Yalcin, T.2
-
7
-
-
0034501099
-
Special feature: Commentary-mobile and localized protons: A framework for understanding peptide dissociation
-
Wysocki, V. H., Tsaprailis, G., Smith, L. L., and Breci, L. A. (2000) Special feature: Commentary-mobile and localized protons: a framework for understanding peptide dissociation. J. Mass Spectrom. 35, 1399-1406
-
(2000)
J. Mass Spectrom.
, vol.35
, pp. 1399-1406
-
-
Wysocki, V.H.1
Tsaprailis, G.2
Smith, L.L.3
Breci, L.A.4
-
8
-
-
84987419408
-
Proposal for a common nomenclature for sequence ions in mass spectra of peptides
-
Roepstorff, P., and Fohlman, J. (1984) Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed. Mass Spectrom. 11, 601
-
(1984)
Biomed. Mass Spectrom.
, vol.11
, pp. 601
-
-
Roepstorff, P.1
Fohlman, J.2
-
9
-
-
0036636707
-
Sequence dependent fragmentation of peptides generated by MALDI quadrupole time-of-flight (MALDI Q-TOF) mass spectrometry and its implications for protein identification
-
Wattenberg, A., Organ, A. J., Schneider, K., Tyldesley, R., Bordoli, R., and Bateman, R. H. (2002) Sequence dependent fragmentation of peptides generated by MALDI quadrupole time-of-flight (MALDI Q-TOF) mass spectrometry and its implications for protein identification. J. Am. Soc. Mass Spectrom. 13, 772-783
-
(2002)
J. Am. Soc. Mass Spectrom.
, vol.13
, pp. 772-783
-
-
Wattenberg, A.1
Organ, A.J.2
Schneider, K.3
Tyldesley, R.4
Bordoli, R.5
Bateman, R.H.6
-
10
-
-
34247354641
-
Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry
-
Khatun, J., Ramkissoon, K., and Giddings, M. C. (2007) Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry. Anal. Chem. 79, 3032-3040
-
(2007)
Anal. Chem.
, vol.79
, pp. 3032-3040
-
-
Khatun, J.1
Ramkissoon, K.2
Giddings, M.C.3
-
11
-
-
33847210333
-
Improving de novo sequencing of peptides using a charged tag and C-terminal digestion
-
Chen, W., Lee, P. J., Shion, H., Ellor, N., and Gebler, J. C. (2007) Improving de novo sequencing of peptides using a charged tag and C-terminal digestion. Anal. Chem. 79, 1583-1590
-
(2007)
Anal. Chem.
, vol.79
, pp. 1583-1590
-
-
Chen, W.1
Lee, P.J.2
Shion, H.3
Ellor, N.4
Gebler, J.C.5
-
12
-
-
33750600611
-
Proteome informatics I: Bioinformatics tools for processing experimental data
-
Palagi, P. M., Hernandez, P., Walther, D., and Appel, R. D. (2006) Proteome informatics I: bioinformatics tools for processing experimental data. Pro-teomics 6, 5435-5444
-
(2006)
Pro-teomics
, vol.6
, pp. 5435-5444
-
-
Palagi, P.M.1
Hernandez, P.2
Walther, D.3
Appel, R.D.4
-
13
-
-
0030339885
-
Charged derivatives for peptide sequencing using a magnetic sector instrument
-
Zaia, J. (1996) Charged derivatives for peptide sequencing using a magnetic sector instrument. Methods Mol. Biol. 61, 29-41
-
(1996)
Methods Mol. Biol.
, vol.61
, pp. 29-41
-
-
Zaia, J.1
-
14
-
-
0001551425
-
Peptide sequencing of charged derivatives by postsource decay MALDI mass spectrometry
-
Spengler, B., Luetzenkirchen, F., Metzger, S., Chaurand, P., Kaufmann, R., Jeffery, W., Bartlet-Jones, M., and Pappin, D. J. C. (1997) Peptide sequencing of charged derivatives by postsource decay MALDI mass spectrometry. Int. J. Mass Spectrom. 169, 127-140
-
(1997)
Int. J. Mass Spectrom.
, vol.169
, pp. 127-140
-
-
Spengler, B.1
Luetzenkirchen, F.2
Metzger, S.3
Chaurand, P.4
Kaufmann, R.5
Jeffery, W.6
Bartlet-Jones, M.7
Pappin, D.J.C.8
-
15
-
-
0032106794
-
Charge derivatization of peptides for analysis by mass spectrometry
-
Roth, K. D. W., Huang, Z.-H., Sadagopan, N., and Watson, J. T. (1998) Charge derivatization of peptides for analysis by mass spectrometry. Mass Spectrom. Rev. 17, 255-274
-
(1998)
Mass Spectrom. Rev.
, vol.17
, pp. 255-274
-
-
Roth, K.D.W.1
Huang, Z.-H.2
Sadagopan, N.3
Watson, J.T.4
-
16
-
-
0033594994
-
A method for high-sensitivity peptide sequencing using postsource decay matrix-assisted laser desorption ionization mass spectrometry
-
Keough, T., Youngquist, R. S., and Lacey, M. P. (1999) A method for high-sensitivity peptide sequencing using postsource decay matrix-assisted laser desorption ionization mass spectrometry. Proc. Natl. Acad. Sci. U. S. A. 96, 7131-7136
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 7131-7136
-
-
Keough, T.1
Youngquist, R.S.2
Lacey, M.P.3
-
17
-
-
24144481841
-
Chemically-assisted fragmentation combined with multi-dimensional liquid chromatography and matrix-assisted laser desorption/ionization post source decay, matrix-assisted laser desorption/ionization tandem time-of-flight or matrix-assisted laser desorption/ionization tandem mass spectrometry for improved sequencing of tryptic peptides
-
Flensburg, J., Tangen, A., Prieto, M., Hellman, U., and Wadensten, H. (2005) Chemically-assisted fragmentation combined with multi-dimensional liquid chromatography and matrix-assisted laser desorption/ionization post source decay, matrix-assisted laser desorption/ionization tandem time-of-flight or matrix-assisted laser desorption/ionization tandem mass spectrometry for improved sequencing of tryptic peptides. Eur. J. Mass Spectrom. 11, 169-179
-
(2005)
Eur. J. Mass Spectrom.
, vol.11
, pp. 169-179
-
-
Flensburg, J.1
Tangen, A.2
Prieto, M.3
Hellman, U.4
Wadensten, H.5
-
18
-
-
0033783397
-
Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryp-tic hydrolysates of proteins following guanidination of lysine-containing peptides
-
Brancia, F. L., Oliver, S. G., and Gaskell, S. J. (2000) Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryp-tic hydrolysates of proteins following guanidination of lysine-containing peptides. Rapid Commun. Mass Spectrom. 14, 2070-2073
-
(2000)
Rapid Commun. Mass Spectrom.
, vol.14
, pp. 2070-2073
-
-
Brancia, F.L.1
Oliver, S.G.2
Gaskell, S.J.3
-
19
-
-
0035543071
-
A novel multifunctional labeling reagent for enhanced protein characterization with mass spectrometry
-
Peters, E. C., Horn, D. M., Tully, D. C., and Brock, A. (2001) A novel multifunctional labeling reagent for enhanced protein characterization with mass spectrometry. Rapid Commun. Mass Spectrom. 15, 2387-2392
-
(2001)
Rapid Commun. Mass Spectrom.
, vol.15
, pp. 2387-2392
-
-
Peters, E.C.1
Horn, D.M.2
Tully, D.C.3
Brock, A.4
-
20
-
-
46749137727
-
Protein identification based on matrix assisted laser desorption/ionization-post source decay-mass spectrometry
-
Gevaert, K., Demol, H., Martens, L., Hoorelbeke, B., Puype, M., Goethals, M., Van Damme, J., De Boeck, S., and Vandekerckhove, J. (2001) Protein identification based on matrix assisted laser desorption/ionization-post source decay-mass spectrometry. Electrophoresis 22, 1645-1651
-
(2001)
Electrophoresis
, vol.22
, pp. 1645-1651
-
-
Gevaert, K.1
Demol, H.2
Martens, L.3
Hoorelbeke, B.4
Puype, M.5
Goethals, M.6
Van Damme, J.7
De Boeck, S.8
Vandekerckhove, J.9
-
21
-
-
0037987698
-
Charge derivatization by 4-sul-fophenyl isothiocyanate enhances peptide sequencing by post-source decay matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
-
Marekov, L. N., and Steinert, P. M. (2003) Charge derivatization by 4-sul-fophenyl isothiocyanate enhances peptide sequencing by post-source decay matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J. Mass Spectrom. 38, 373-377
-
(2003)
J. Mass Spectrom.
, vol.38
, pp. 373-377
-
-
Marekov, L.N.1
Steinert, P.M.2
-
22
-
-
0034534884
-
Derivatization procedures to facilitate de novo sequencing of lysine-terminated tryptic peptides using postsource decay matrix-assisted laser desorption/ioni-zation mass spectrometry
-
Keough, T., Lacey, M. P., and Youngquist, R. S. (2000) Derivatization procedures to facilitate de novo sequencing of lysine-terminated tryptic peptides using postsource decay matrix-assisted laser desorption/ioni-zation mass spectrometry. Rapid Commun. Mass Spectrom. 14, 2348-2356
-
(2000)
Rapid Commun. Mass Spectrom.
, vol.14
, pp. 2348-2356
-
-
Keough, T.1
Lacey, M.P.2
Youngquist, R.S.3
-
23
-
-
33750113080
-
Primary amine coding as a path to comparative proteomics
-
Regnier, F. E., and Samir, J. (2006) Primary amine coding as a path to comparative proteomics. Proteomics 6, 3968-3979
-
(2006)
Proteomics
, vol.6
, pp. 3968-3979
-
-
Regnier, F.E.1
Samir, J.2
-
24
-
-
42949113985
-
Straightforward ladder sequencing of peptides using a Lys-N metalloen-dopeptidase
-
Taouatas, N., Drugan, M. M., Heck, A. J. R., and Mohammed, S. (2008) Straightforward ladder sequencing of peptides using a Lys-N metalloen- dopeptidase. Nat. Methods 5, 405-407
-
(2008)
Nat. Methods
, vol.5
, pp. 405-407
-
-
Taouatas, N.1
Drugan, M.M.2
Heck, A.J.R.3
Mohammed, S.4
-
25
-
-
33846269339
-
Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors
-
Swaney, D. L., McAlister, G. C., Wirtala, M., Schwartz, J. C., Syka, J. E., and Coon, J. J. (2007) Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Anal. Chem. 79, 477-485
-
(2007)
Anal. Chem.
, vol.79
, pp. 477-485
-
-
Swaney, D.L.1
McAlister, G.C.2
Wirtala, M.3
Schwartz, J.C.4
Syka, J.E.5
Coon, J.J.6
-
26
-
-
0036067603
-
Nanoscale LC-MS(n): Technical design and applications to peptide and protein analysis
-
Meiring, H. D., van der Heeft, E., ten Hove, G. J., and de Jong, A. (2002) Nanoscale LC-MS(n): technical design and applications to peptide and protein analysis. J. Sep. Sci. 25, 557-568
-
(2002)
J. Sep. Sci.
, vol.25
, pp. 557-568
-
-
Meiring, H.D.1
Van Der Heeft, E.2
Ten Hove, G.J.3
De Jong, A.4
-
27
-
-
33748297890
-
-
Elsevier Scientific Publishing Co., Amsterdam, The Netherlands
-
Takio, K. (2004) Handbook of Proteolytic Enzymes, 2nd Ed., pp. 788-791, Elsevier Scientific Publishing Co., Amsterdam, The Netherlands
-
(2004)
Handbook of Proteolytic Enzymes, 2nd Ed.
, pp. 788-791
-
-
Takio, K.1
-
28
-
-
27644463394
-
18O labeling for comparative pro-teomics: Application to cytokine/lipopolysaccharide-treated human retinal pigment epithelium cell line
-
18O labeling for comparative pro-teomics: application to cytokine/lipopolysaccharide-treated human retinal pigment epithelium cell line. Mol. Cell. Proteomics 4, 1550-1557
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1550-1557
-
-
Rao, K.C.S.1
Palamalai, V.2
Dunlevy, J.R.3
Miyagi, M.4
-
29
-
-
38049076293
-
Targeted analysis of protein termini
-
Dormeyer, W., Mohammed, S., Breukelen, B., Krijgsveld, J., and Heck, A. J. (2007) Targeted analysis of protein termini. J. Proteome Res. 6, 4634-4645
-
(2007)
J. Proteome Res.
, vol.6
, pp. 4634-4645
-
-
Dormeyer, W.1
Mohammed, S.2
Breukelen, B.3
Krijgsveld, J.4
Heck, A.J.5
-
30
-
-
59149090911
-
Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications
-
Taouatas, N., Altelaar, A. F. M., Drugan, M. M., Helbig, A. O., Mohammed, S., and Heck, A. J. R. (2009) Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications. Mol. Cell. Proteomics 8, 190-200
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 190-200
-
-
Taouatas, N.1
Altelaar, A.F.M.2
Drugan, M.M.3
Helbig, A.O.4
Mohammed, S.5
Heck, A.J.R.6
-
31
-
-
4344574540
-
Large-scale characterization of HeLa cell nuclear phosphoproteins
-
Beausoleil, S. A., Jedrychowski, M., Schwartz, D., Elias, J. E., Villen, J., Li, J. X., Cohn, M. A., Cantley, L. C., and Gygi, S. P. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc. Natl. Acad. Sci. U. S. A. 101, 12130-12135
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 12130-12135
-
-
Beausoleil, S.A.1
Jedrychowski, M.2
Schwartz, D.3
Elias, J.E.4
Villen, J.5
Li, J.X.6
Cohn, M.A.7
Cantley, L.C.8
Gygi, S.P.9
-
33
-
-
33947603651
-
Evaluation and optimization of ZIC-HILIC-RP as an alternative MudPIT strategy
-
Boersema, P. J., Divecha, N., Heck, A. J. R., and Mohammed, S. (2007) Evaluation and optimization of ZIC-HILIC-RP as an alternative MudPIT strategy. J. Proteome Res. 6, 937-946
-
(2007)
J. Proteome Res.
, vol.6
, pp. 937-946
-
-
Boersema, P.J.1
Divecha, N.2
Heck, A.J.R.3
Mohammed, S.4
-
34
-
-
0028053010
-
Peptide map analysis of recombinant human granulocyte colony stimulating factor: Elimination of methionine modification and nonspecific cleavages
-
Jones, M. D., Merewether, L. A., Clogston, C. L., and Lu, H. S. (1994) Peptide map analysis of recombinant human granulocyte colony stimulating factor: elimination of methionine modification and nonspecific cleavages. Anal. Biochem. 216, 135-146
-
(1994)
Anal. Biochem.
, vol.216
, pp. 135-146
-
-
Jones, M.D.1
Merewether, L.A.2
Clogston, C.L.3
Lu, H.S.4
-
35
-
-
28544431940
-
De novo sequencing of neuropeptides using reductive isotopic methylation and investigation of ESI QTOF MS/MS fragmentation pattern of neuropeptides with N-terminal dimethylation
-
Fu, Q., and Li, L. J. (2005) De novo sequencing of neuropeptides using reductive isotopic methylation and investigation of ESI QTOF MS/MS fragmentation pattern of neuropeptides with N-terminal dimethylation. Anal. Chem. 77, 7783-7795
-
(2005)
Anal. Chem.
, vol.77
, pp. 7783-7795
-
-
Fu, Q.1
Li, L.J.2
-
36
-
-
0029805733
-
Ion chemistry of protonated lysine derivatives
-
Yalcin, T., and Harrison, A. G. (1996) Ion chemistry of protonated lysine derivatives. J. Mass Spectrom. 31, 1237-1243
-
(1996)
J. Mass Spectrom.
, vol.31
, pp. 1237-1243
-
-
Yalcin, T.1
Harrison, A.G.2
-
37
-
-
0038034116
-
Cleavage N-terminal to proline: Analysis of a database of peptide tandem mass spectra
-
Breci, L. A., Tabb, D. L., Yates, J. R., and Wysocki, V. H. (2003) Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra. Anal. Chem. 75, 1963-1971
-
(2003)
Anal. Chem.
, vol.75
, pp. 1963-1971
-
-
Breci, L.A.1
Tabb, D.L.2
Yates, J.R.3
Wysocki, V.H.4
-
38
-
-
0000312004
-
Protein sequencing by tandem mass spectrometry
-
Hunt, D. F., Yates, J. R., Shabanowitz, J., Winston, S., and Hauer, C. R. (1986) Protein sequencing by tandem mass spectrometry. Proc. Natl. Acad. Sci. U. S. A. 83, 6233-6237
-
(1986)
Proc. Natl. Acad. Sci. U. S. A.
, vol.83
, pp. 6233-6237
-
-
Hunt, D.F.1
Yates, J.R.2
Shabanowitz, J.3
Winston, S.4
Hauer, C.R.5
-
39
-
-
0029823591
-
Probing the proline effect in CID of protonated peptides
-
Vaisar, T., and Urban, J. (1996) Probing the proline effect in CID of protonated peptides. J. Mass Spectrom. 31, 1185-1187
-
(1996)
J. Mass Spectrom.
, vol.31
, pp. 1185-1187
-
-
Vaisar, T.1
Urban, J.2
-
40
-
-
34548356772
-
An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative pro-teomics
-
Van Hoof, D., Pinkse, M. W. H., Ward-Van Oostwaard, D., Mummery, C. L., Heck, A. J. R., and Krijgsveld, J. (2007) An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative pro-teomics. Nat. Methods 4, 677-678
-
(2007)
Nat. Methods
, vol.4
, pp. 677-678
-
-
Van Hoof, D.1
Pinkse, M.W.H.2
Ward-Van Oostwaard, D.3
Mummery, C.L.4
Heck, A.J.R.5
Krijgsveld, J.6
|