Rapid chemical digestion of small acid-soluble spore proteins for analysis of Bacillus spores

Analytical Chemistry

Volumn 78, Issue 1, 2006, Pages 181-188

  Swatkoski, Stephen ^a   Russell, Scott C ^a   Edwards, Nathan ^a   Fenselau, Catherine ^a  

^a Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACID DIGESTION; BACILLUS SPECIES; BACILLUS SPORES; CHEMICAL DIGESTION;

BACTERIA; DESORPTION; IONIZATION; LASER APPLICATIONS; MASS SPECTROMETRY; MICROWAVES;

PROTEINS;

BACTERIAL PROTEIN; EXTRACELLULAR ANTIGEN 1; FORMIC ACID; MEMBRANE PROTEIN; SINAPIC ACID; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS; BACILLUS ANTHRACIS; BACILLUS CEREUS; BACILLUS SUBTILIS; BACILLUS THURINGIENSIS; BACTERIAL SPORE; GEOBACILLUS STEAROTHERMOPHILUS; HEATING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MICROWAVE RADIATION; NONHUMAN; PAGR GENE; PROTEIN DATABASE; PROTEIN HYDROLYSIS; PROTEIN ISOLATION; REGULATOR GENE; THEILERIA ANNULATA;

AMINO ACID SEQUENCE; BACILLUS ANTHRACIS; BACILLUS SUBTILIS; BACTERIAL PROTEINS; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SPORES, BACTERIAL;

EID: 30044449287     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac051521d     Document Type: Article

References (37)

1. Fenselau, C.; Demirev, P. A. Mass Spectrom. Rev. 2001, 20, 157-171.
2. Karas, M.; Gluckmann, M.; Schafer, J. J. Mass Spectrom. 2000, 35, 1-12.
3. Lay, J. O. Mass Spectrom. Rev. 2001, 20, 172-194.
4. Krishnamurthy, T.; Ross, P. L. Rapid Commun. Mass Spectrom. 1996, 10, 1992-1996.
5. Claydon, M. A.; Davey, S. N.; EdwardsJones, V.; Gordon, D. B. Nat. Biotechnol. 1996, 14, 1584-1586.
6. Holland, R. D.; Wilkes, J. G.; Raffi, F.; Sutherland, J. B.; Persons, C. C.; Voorhees, K. J.; Lay, J. O. Rapid Commun. Mass Spectrom. 1996, 10, 1227-1232.
7. Conway, G. C.; Smole, S. C.; Sarracino, D. A.; Arbeit, R. D.; Leopold, P. E., J. Microbiol. Biotechnol. 2001, 3, 103-112.
8. Jarman, K. H.; Cebula, S. T.; Saenz, A. J.; Petersen, C. E.; Valentine, N. B.; Kingsley, M. T.; Wahl, K. L. Anal. Chem. 2000, 72, 1217-1223.
9. Demirev, P. A.; Lin, J. S.; Pineda, F. J.; Fenselau, C. Anal. Chem. 2001, 73, 4566-4573.
10. Pineda, F. J.; Lin, J. S.; Fenselau, C.; Demirev, P. A. Anal Chem. 2000, 72, 3739-3744.
11. Demirev, P. A.; Ho, Y. P.; Ryzhov, V.; Fenselau, C. Anal. Chem. 1999, 71, 2732-2738.
12. Warscheid, B.; Fenselau, C. Anal. Chem. 2003, 75, 5618-5627.
13. Warscheid, B.; Jackson, K.; Sutton, C.; Fenselau, C. Anal. Chem. 2003, 75, 5608-5617.
14. Pribil, P. A.; Patton, E.; Black, G.; Doroshenko, V.; Fenselau, C. J. Mass Spectrom. 2005, 40, 464-474.
15. Warscheid, B.; Fenselau, C. Proteomics 2004, 4, 2877-2892.
16. Li, A. Q.; Sowder, R. C.; Henderson, L. E.; Moore, S. P.; Garfinkel, D. J.; Fisher, R. J. Anal. Chem. 2001, 73, 5395-5402.
17. Hathout, Y.; Setlow, B.; Cabrera-Martinez, R. M.; Fenselau, C.; Setlow, P. Appl. Environ. Microbiol. 2003, 69, 1100-1107.
18. Yao, Z. P.; Afonso, C.; Fenselau, C. Rapid Commun. Mass Spectrom. 2002, 16, 1953-1956.
19. Schultz, J. Methods Enzymol. 1967, 11, 255-263.
20. Inglis, A. S. Methods Enzymol. 1983, 91, 324-332.
21. Smith, B. R.; Walker, J. M., Ed. The Protein Protocols Handbook; Humana Press: Totowa, NJ, 1996; pp 381-384.
22. Zhong, H. Y.; Marcus, S. L.; Li, L. J. Am. Soc. Mass. Spectrom. 2005, 16, 471-481.
23. Zhong, H. Y.; Zhang, Y.; Wen, Z. H.; Li, L. Nat. Biotechnol. 2004, 22, 1291-1296.
24. Hauser, N.; Basile, F. Presented at the 52nd Annual American Society for Mass Spectrometry Conference, Nashville, TN, May 23-27, 2004.
25. Hathout, Y.; Demirev, P. A.; Ho, Y. P.; Bundy, J. L.; Ryzhov, V.; Sapp, L.; Stutler, J.; Jackman, J.; Fenselau, C. Appl. Environ. Microbiol. 1999, 65, 4313-4319.
26. Nicholson, W. L.; Setlow, P. In Molecular Biological Methods for Bacillus; Harwood, C. R., Cutting, S. M., Eds.; J. Wiley: Chichester, U.K., 1990; p 391.
27. Sonnhammer, E. L. L.; Eddy, S. R.; Durbin, R. Proteins 1997, 28, 405-420.
28. Haft, D. H.; Selengut, J. D.; White, O. Nucleic Acids Res. 2003, 31, 371-373.
29. Bateman, A.; Coin, L.; Durbin, R.; Finn, R. D.; Hollich, V.; Griffiths-Jones, S.; Khanna, A.; Marshall, M.; Moxon, S.; Sonnhammer, E. L. L; Studholme, D. J.; Yeats, C.; Eddy, S. R. Nucleic Acids Res. 2004, 32, D138-D141.
30. Jensen, G. B.; Hansen, B. M.; Eilenberg, J.; Mahillon, J. Environ. Microbiol. 2003, 5, 631-640.
31. Candelon, B.; Guilloux, K.; Ehrlich, S. D.; Sorokin, A. Microbiology-Sgm 2004, 150, 601-611.
32. Sun, D. X.; Setlow, P. J. Bacteriol. 1987, 169, 3088-3093.
33. Loshon, C. A.: Fliss, E. R.; Setlow, B.; Foerster, H. F.; Setlow, P. J. Bacteriol. 1986, 167, 168-173.
34. Pain, A.; Renauld, H.; Berriman, M.; Murphy, L.; Yeats, C. A.; Weir, W.; Kerhornou, A.; Aslett, M.; Bishop, R.; Bouchier, C.; Cochet, M.; Coulson, R. M. R.; Cronin, A.; de Villiers, E. P.; Fraser, A.; Fosker, N.; Gardner, M.; Goble, A.; Griffiths-Jones, S.; Harris, D. E.; Katzer, F.; Larke, N.; Lord, A.; Maser, P.; McKellar, S.; Mooney, P.; Morton, F.; Nene, V.; O'Neil, S.; Price, C.; Quail, M. A.; Rabbinowitsch, E.; Rawlings, N. D.; Rutter, S.; Saunders: D.; Seeger, K.; Shah, T.; Squares, R.; Squares, S.; Tivey, A.; Walker, A. R.; Woodard, J.; Dobbelaere, D. A. E.; Langsley, G.; Rajandream, M. A.; McKeever, D.; Shiels, B.; Tait, A.; Barrell, B.; Hall, N. Science 2005, 309, 131-133.
35. Mesnage, S.; TosiCouture, E.; Mock, M.; Gounon, P.; Fouet, A. Mol. Microbiol. 1997, 23, 1147-1155.
36. Williams, D. D.; Turnbough, C. L. J. Bacteriol. 2004, 186, 566-569.
37. Mignot, T.; Mock, M.; Fouet, A Mol. Microbiol. 2003, 47, 917-927.