메뉴 건너뛰기




Volumn 5, Issue 2, 2006, Pages 144-153

Enhanced sequence coverage of proteins in human cerebrospinal fluid using multiple enzymatic digestion and linear ion trap LC-MS/MS

Author keywords

Glutamic acid endopeptidase; Trypsin

Indexed keywords

ALBUMIN; ALPHA 1 ANTICHYMOTRYPSIN; ALPHA 1 ANTITRYPSIN; ALPHA 2 MACROGLOBULIN; ANGIOTENSINOGEN; APOLIPOPROTEIN A1; APOLIPOPROTEIN A4; APOLIPOPROTEIN D; APOLIPOPROTEIN E; ARGININE CARBOXYPEPTIDASE; CERULOPLASMIN; CHROMOGRANIN B; CHYMOTRYPSIN; COMPLEMENT COMPONENT C3; COMPLEMENT COMPONENT C4; CYSTATIN C; GELSOLIN; GLUTAMATE DECARBOXYLASE; HAPTOGLOBIN; HEMOPEXIN; IMMUNOGLOBULIN HEAVY CHAIN; IMMUNOGLOBULIN KAPPA CHAIN; KININOGEN; OROSOMUCOID; OSTEOPONTIN; PREALBUMIN; PROTEINASE INHIBITOR; TRYPSIN; VITAMIN D BINDING PROTEIN; ARGININE ENDOPEPTIDASE; PEPTIDE HYDROLASE; PROTEOME; SERINE PROTEINASE;

EID: 33748573295     PISSN: 14739550     EISSN: 14774062     Source Type: Journal    
DOI: 10.1093/bfgp/ell026     Document Type: Article
Times cited : (62)

References (33)
  • 2
  • 3
    • 21244457198 scopus 로고    scopus 로고
    • Consensus paper of the WFSBP Task Force on Biological Markers of Dementia: The role of CSF and blood analysis in the early and differential diagnosis of dementia
    • Wiltfang J, Lewczuk P, Riederer P, et al. Consensus paper of the WFSBP Task Force on Biological Markers of Dementia: The role of CSF and blood analysis in the early and differential diagnosis of dementia. World J Biol Psychiatry 2005;6:69-84.
    • (2005) World J Biol Psychiatry , vol.6 , pp. 69-84
    • Wiltfang, J.1    Lewczuk, P.2    Riederer, P.3
  • 4
    • 0021628758 scopus 로고
    • Two-dimensional electrophoresis and "ultrasensitive" silver staining of cerebrospinal fluid proteins in neurological diseases
    • Harrington MG, Merril CR. Two-dimensional electrophoresis and "ultrasensitive" silver staining of cerebrospinal fluid proteins in neurological diseases. Clin Chem 1984;30: 1933-7.
    • (1984) Clin Chem , vol.30 , pp. 1933-1937
    • Harrington, M.G.1    Merril, C.R.2
  • 5
    • 0022411758 scopus 로고
    • Differences in cerebrospinal fluid proteins between patients with schizophrenia and normal persons
    • Harrington MG, Merril CR, Torrey EF. Differences in cerebrospinal fluid proteins between patients with schizophrenia and normal persons. Clin Chem 1985;31:722-6.
    • (1985) Clin Chem , vol.31 , pp. 722-726
    • Harrington, M.G.1    Merril, C.R.2    Torrey, E.F.3
  • 6
    • 0022606619 scopus 로고
    • Abnormal proteins in the cerebrospinal fluid of patients with Creutzfeldt-Jakob disease
    • Harrington MG, Merril CR, Asher DM, Gajdusek DC. Abnormal proteins in the cerebrospinal fluid of patients with Creutzfeldt-Jakob disease. N Engl J Med 1986;315: 279-83.
    • (1986) N Engl J Med , vol.315 , pp. 279-283
    • Harrington, M.G.1    Merril, C.R.2    Asher, D.M.3    Gajdusek, D.C.4
  • 7
    • 0029840653 scopus 로고    scopus 로고
    • The 14-3-3 brain protein in cerebrospinal fluid as a marker for transmissible spongiform encephalopathies
    • Hsich G, Kenney K, Gibbs CJ, et al. The 14-3-3 brain protein in cerebrospinal fluid as a marker for transmissible spongiform encephalopathies. N Engl J Med 1996;335: 924-30.
    • (1996) N Engl J Med , vol.335 , pp. 924-930
    • Hsich, G.1    Kenney, K.2    Gibbs, C.J.3
  • 8
    • 0035826782 scopus 로고    scopus 로고
    • Practice parameter: Diagnosis of dementia (an evidence-based review)
    • Report of the Quality Standards Subcommittee of the American Academy of Neurology
    • Knopman DS, DeKosky ST, Cummings JL, et al. Practice parameter: diagnosis of dementia (an evidence-based review). Report of the Quality Standards Subcommittee of the American Academy of Neurology. Neurology 2001; 56:1143-53.
    • (2001) Neurology , vol.56 , pp. 1143-1153
    • Knopman, D.S.1    DeKosky, S.T.2    Cummings, J.L.3
  • 9
    • 29244469691 scopus 로고    scopus 로고
    • Protein analysis in human cerebrospinal fluid: Physiological aspects, current progress and future challenges
    • Huhmer AF, Biringer RG, Amato H, et al. Protein analysis in human cerebrospinal fluid: Physiological aspects, current progress and future challenges. Dis Markers 2006;22:211-34.
    • (2006) Dis Markers , vol.22 , pp. 211-234
    • Huhmer, A.F.1    Biringer, R.G.2    Amato, H.3
  • 10
    • 33745608514 scopus 로고    scopus 로고
    • Combined top-down, middle-down and bottom-up analysis of apo A1 and PTGDS isolated from human CSF using ETD-linear ion trap and FT-mass spectrometry
    • In: Edition San Antonio, TX
    • Biringer RG, Hao Z, Harrington M, Hühmer AFR. Combined top-down, middle-down and bottom-up analysis of apo A1 and PTGDS isolated from human CSF using ETD-linear ion trap and FT-mass spectrometry. In: American Society for Mass Spectrometry Annual Meeting. Edition San Antonio, TX, 2005.
    • (2005) American Society for Mass Spectrometry Annual Meeting
    • Biringer, R.G.1    Hao, Z.2    Harrington, M.3    Hühmer, A.F.R.4
  • 11
    • 0027081122 scopus 로고
    • Human cerebrospinal fluid protein database: Edition 1992
    • Yun M, Wu W, Hood L, Harrington M. Human cerebrospinal fluid protein database: Edition 1992. Electrophoresis 1992;13:1002-13.
    • (1992) Electrophoresis , vol.13 , pp. 1002-1013
    • Yun, M.1    Wu, W.2    Hood, L.3    Harrington, M.4
  • 12
    • 21044437207 scopus 로고    scopus 로고
    • The use of proteomics in biomarker discovery in neurodegenerative diseases
    • Davidsson P, Sjogren M. The use of proteomics in biomarker discovery in neurodegenerative diseases. Dis Markers 2005;21:81-92.
    • (2005) Dis Markers , vol.21 , pp. 81-92
    • Davidsson, P.1    Sjogren, M.2
  • 13
    • 29244455420 scopus 로고    scopus 로고
    • Identification of proteins from human cerebrospinal fluid by two-dimensional electrophoresis and ion-trap mass spectrometry: Improved sample preparation and presentation methods
    • Abstract P112-S, At: In Edition
    • Biringer RG, Harrington MG, Stochaj W, Bondarenko P, Huhmer A, Amato H, Chu G, Swedberg S. Identification of proteins from human cerebrospinal fluid by two-dimensional electrophoresis and ion-trap mass spectrometry: improved sample preparation and presentation methods. Abstract P112-S, At: http://abrf.org/Other/ABRFMeetings/ABRF2002/2002Abstracts.html. In Edition 2002.
    • (2002)
    • Biringer, R.G.1    Harrington, M.G.2    Stochaj, W.3    Bondarenko, P.4    Huhmer, A.5    Amato, H.6    Chu, G.7    Swedberg, S.8
  • 14
    • 3042816692 scopus 로고    scopus 로고
    • Proteomic analysis of cerebrospinal fluid from multiple sclerosis patients
    • Dumont D, Noben JP, Raus J, et al. Proteomic analysis of cerebrospinal fluid from multiple sclerosis patients. Proteomics 2004;4:2117-24.
    • (2004) Proteomics , vol.4 , pp. 2117-2124
    • Dumont, D.1    Noben, J.P.2    Raus, J.3
  • 15
    • 0348142992 scopus 로고    scopus 로고
    • Structural analysis of 2D-gel-separated glycoproteins from human cerebrospinal fluid by tandem high-resolution mass spectrometry
    • Hakansson K, Emmett MR, Marshall AG, et al. Structural analysis of 2D-gel-separated glycoproteins from human cerebrospinal fluid by tandem high-resolution mass spectrometry. J Proteome Res 2003;2:581-8.
    • (2003) J Proteome Res , vol.2 , pp. 581-588
    • Hakansson, K.1    Emmett, M.R.2    Marshall, A.G.3
  • 16
    • 3042688356 scopus 로고    scopus 로고
    • Proteomic analysis of multiple sclerosis cerebrospinal fluid
    • Hammack BN, Fung KY, Hunsucker SW, et al. Proteomic analysis of multiple sclerosis cerebrospinal fluid. Mult Scler 2004;10:245-60.
    • (2004) Mult Scler , vol.10 , pp. 245-260
    • Hammack, B.N.1    Fung, K.Y.2    Hunsucker, S.W.3
  • 17
    • 30044449269 scopus 로고    scopus 로고
    • Topiramate inhibits trigemino-vascular activation: An intravital microscopy study
    • Akerman S, Goadsby PJ. Topiramate inhibits trigemino-vascular activation: An intravital microscopy study. Br J Pharmacol 2005;146:7-14.
    • (2005) Br J Pharmacol , vol.146 , pp. 7-14
    • Akerman, S.1    Goadsby, P.J.2
  • 18
    • 17444383852 scopus 로고    scopus 로고
    • Depletion of high-abundant proteins in body fluids prior to liquid chromatography fourier transform ion cyclotron resonance mass spectrometry
    • Ramstrom J, Hagman C, Mitchell JK, et al. Depletion of high-abundant proteins in body fluids prior to liquid chromatography fourier transform ion cyclotron resonance mass spectrometry. J Proteome Res 2005;4:410-6.
    • (2005) J Proteome Res , vol.4 , pp. 410-416
    • Ramstrom, J.1    Hagman, C.2    Mitchell, J.K.3
  • 19
    • 0033944610 scopus 로고    scopus 로고
    • Identification of two-dimensionally separated human cerebrospinal fluid proteins by N-terminal sequencing, matrix-assisted laser desorption/ionization - Mass spectrometry, nanoliquid chromatography-electrospray ionization-time of flight-mass spectrometry, and tandem mass spectrometry
    • Raymackers J, Daniels A, De Brabandere V, et al. Identification of two-dimensionally separated human cerebrospinal fluid proteins by N-terminal sequencing, matrix-assisted laser desorption/ionization - mass spectrometry, nanoliquid chromatography-electrospray ionization-time of flight-mass spectrometry, and tandem mass spectrometry. Electrophoresis 2000;21:2266-83.
    • (2000) Electrophoresis , vol.21 , pp. 2266-2283
    • Raymackers, J.1    Daniels, A.2    De Brabandere, V.3
  • 20
    • 1242284984 scopus 로고    scopus 로고
    • Proteomic analysis of human ventricular cerebrospinal fluid from neurologically normal, elderly subjects using two-dimensional LC-MS/MS
    • Wenner BR, Lovell MA, Lynn BC. Proteomic analysis of human ventricular cerebrospinal fluid from neurologically normal, elderly subjects using two-dimensional LC-MS/MS. J Proteome Res 2004;3:97-103.
    • (2004) J Proteome Res , vol.3 , pp. 97-103
    • Wenner, B.R.1    Lovell, M.A.2    Lynn, B.C.3
  • 21
    • 0242569370 scopus 로고    scopus 로고
    • Proteomics analysis of phosphotyrosyl-proteins in human lumbar cerebrospinal fluid
    • Yuan X, Desiderio DM. Proteomics analysis of phosphotyrosyl-proteins in human lumbar cerebrospinal fluid. J Proteome Res 2003;2:476-87.
    • (2003) J Proteome Res , vol.2 , pp. 476-487
    • Yuan, X.1    Desiderio, D.M.2
  • 22
    • 13844310832 scopus 로고    scopus 로고
    • Proteomics analysis of prefractionated human lumbar cerebrospinal fluid
    • Yuan X, Desiderio DM. Proteomics analysis of prefractionated human lumbar cerebrospinal fluid. Proteomics 2005;5: 541-50.
    • (2005) Proteomics , vol.5 , pp. 541-550
    • Yuan, X.1    Desiderio, D.M.2
  • 23
    • 10044279102 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid
    • Zhang J, Goodlett DR, Peskind ER, et al. Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid. Neurobiol Aging 2005;26:207-27.
    • (2005) Neurobiol Aging , vol.26 , pp. 207-227
    • Zhang, J.1    Goodlett, D.R.2    Peskind, E.R.3
  • 24
    • 0042835633 scopus 로고    scopus 로고
    • Identification of tumor-related proteins by proteomic analysis of cerebrospinal fluid from patients with primary brain tumors
    • Zheng PP, Luider TM, Pieters R, et al. Identification of tumor-related proteins by proteomic analysis of cerebrospinal fluid from patients with primary brain tumors. J Neuropathol Exp Neurol 2003;62:855-62.
    • (2003) J Neuropathol Exp Neurol , vol.62 , pp. 855-862
    • Zheng, P.P.1    Luider, T.M.2    Pieters, R.3
  • 26
    • 0031983653 scopus 로고    scopus 로고
    • Neurexins: Three genes and 1001 products
    • Missler M, Sudhof TC. Neurexins: Three genes and 1001 products. Trends Genet 1998;14:20-6.
    • (1998) Trends Genet , vol.14 , pp. 20-26
    • Missler, M.1    Sudhof, T.C.2
  • 27
    • 29244452165 scopus 로고    scopus 로고
    • Prostaglandin D synthase isoforms from cerebrospinal fluid vary with brain pathology
    • Harrington MG, Fonteh AN, Biringer RG, et al. Prostaglandin D synthase isoforms from cerebrospinal fluid vary with brain pathology. Dis Markers 2006;22:73-81.
    • (2006) Dis Markers , vol.22 , pp. 73-81
    • Harrington, M.G.1    Fonteh, A.N.2    Biringer, R.G.3
  • 28
    • 0023430927 scopus 로고
    • Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose
    • Aebersold RH, Leavitt J, Saavedra RA, et al. Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose. Proc Natl Acad Sci USA 1987; 84:6970-4.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 6970-6974
    • Aebersold, R.H.1    Leavitt, J.2    Saavedra, R.A.3
  • 29
    • 0037274605 scopus 로고    scopus 로고
    • Multiple enzymatic digestion for enhanced sequence coverage of proteins in complex proteomic mixtures using capillary LC with ion trap MS/MS
    • Choudhary G, Wu SL, Shieh P, Hancock WS. Multiple enzymatic digestion for enhanced sequence coverage of proteins in complex proteomic mixtures using capillary LC with ion trap MS/MS. J Proteome Res 2003;2:59-67.
    • (2003) J Proteome Res , vol.2 , pp. 59-67
    • Choudhary, G.1    Wu, S.L.2    Shieh, P.3    Hancock, W.S.4
  • 30
    • 18444391517 scopus 로고    scopus 로고
    • Shotgun identification of protein modifications from protein complexes and lens tissue
    • MacCoss MJ, McDonald WH, Saraf A, et al. Shotgun identification of protein modifications from protein complexes and lens tissue. Proc Natl Acad Sci USA 2002;99:7900-5.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 7900-7905
    • MacCoss, M.J.1    McDonald, W.H.2    Saraf, A.3
  • 32
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng JK. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 1994;5:976-89.
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1
  • 33
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR, 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 2001;19: 242-7.
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.