메뉴 건너뛰기




Volumn 4, Issue , 2006, Pages

Protein cleavage strategies for an improved analysis of the membrane proteome

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIORHODOPSIN; CHYMOTRYPSIN; MEMBRANE PROTEIN; PEPTIDASE; PROTEOME; TRYPSIN;

EID: 33646557331     PISSN: 14775956     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-4-2     Document Type: Article
Times cited : (87)

References (29)
  • 1
    • 0024289037 scopus 로고
    • Laser desorption ionization of proteins with molecular masses exceeding 10000 daltons
    • Karas M, Hillenkamp F: Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem 1988, 60(20):2299-2301.
    • (1988) Anal Chem , vol.60 , Issue.20 , pp. 2299-2301
    • Karas, M.1    Hillenkamp, F.2
  • 3
    • 0037131014 scopus 로고    scopus 로고
    • Nobel Prize in Chemistry. Mastering macromolecules
    • Cho A, Normile D: Nobel Prize in Chemistry. Mastering macromolecules. Science 2002, 298(5593):527-528.
    • (2002) Science , vol.298 , Issue.5593 , pp. 527-528
    • Cho, A.1    Normile, D.2
  • 4
    • 0242663865 scopus 로고    scopus 로고
    • Separation methods in the analysis of protein membrane complexes
    • Kashino Y: Separation methods in the analysis of protein membrane complexes. J Chromatogr B Analyt Technol Biomed Life Sci 2003, 797(1-2):191-216.
    • (2003) J Chromatogr B Analyt Technol Biomed Life Sci , vol.797 , Issue.1-2 , pp. 191-216
    • Kashino, Y.1
  • 5
    • 0035582244 scopus 로고    scopus 로고
    • An automated multidimensional protein identification technology for shotgun proteomics
    • Wolters DA, Washburn MP, Yates JR 3rd: An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem 2001, 73(23):5683-5690.
    • (2001) Anal Chem , vol.73 , Issue.23 , pp. 5683-5690
    • Wolters, D.A.1    Washburn, M.P.2    Yates III, J.R.3
  • 6
    • 0036828724 scopus 로고    scopus 로고
    • Probability-based validation of protein identifications using a modified SEQUEST algorithm
    • MacCoss MJ, Wu CC, Yates JR 3rd: Probability-based validation of protein identifications using a modified SEQUEST algorithm. Anal Chem 2002, 74(21):5593-5599.
    • (2002) Anal Chem , vol.74 , Issue.21 , pp. 5593-5599
    • MacCoss, M.J.1    Wu, C.C.2    Yates III, J.R.3
  • 7
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157(1):105-132.
    • (1982) J Mol Biol , vol.157 , Issue.1 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 8
    • 0037056021 scopus 로고    scopus 로고
    • Combined in-gel tryptic digestion CNBr cleavage for the generation of peptide maps of an integral membrane protein with MALDI-TOF mass spectrometry
    • van Montfort BA, Doeven MK, Canas B, Veenhoff LM, Poolman B, Robillard GT: Combined in-gel tryptic digestion and CNBr cleavage for the generation of peptide maps of an integral membrane protein with MALDI-TOF mass spectrometry. Biochim Biophys Acta 2002, 1555(1-3):111-115.
    • (2002) Biochim Biophys Acta , vol.1555 , Issue.1-3 , pp. 111-115
    • van Montfort, B.A.1    Doeven, M.K.2    Canas, B.3    Veenhoff, L.M.4    Poolman, B.5    Robillard, G.T.6
  • 9
    • 0038561131 scopus 로고    scopus 로고
    • A method for the comprehensive proteomic analysis of membrane proteins
    • Wu CC, MacCoss MJ, Howell KE, Yates JR: A method for the comprehensive proteomic analysis of membrane proteins. Nat Biotechnol 2003, 21(5):532-538.
    • (2003) Nat Biotechnol , vol.21 , Issue.5 , pp. 532-538
    • Wu, C.C.1    MacCoss, M.J.2    Howell, K.E.3    Yates, J.R.4
  • 10
    • 0037347236 scopus 로고    scopus 로고
    • Evaluation of nonionic zwitterionic detergents as membrane protein solubilizers in two-dimensional electrophoresis
    • Luche S, Santoni V, Rabilloud T: Evaluation of nonionic and zwitterionic detergents as membrane protein solubilizers in two-dimensional electrophoresis. Proteomics 2003, 3(3):249-253.
    • (2003) Proteomics , vol.3 , Issue.3 , pp. 249-253
    • Luche, S.1    Santoni, V.2    Rabilloud, T.3
  • 11
    • 0036665518 scopus 로고    scopus 로고
    • Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry
    • Blonder J, Goshe MB, Moore RJ, Pasa-Tolic L, Masselon CD, Lipton MS, Smith RD: Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry. J Proteome Res 2002, 1(4):351-360.
    • (2002) J Proteome Res , vol.1 , Issue.4 , pp. 351-360
    • Blonder, J.1    Goshe, M.B.2    Moore, R.J.3    Pasa-Tolic, L.4    Masselon, C.D.5    Lipton, M.S.6    Smith, R.D.7
  • 12
    • 0030770635 scopus 로고    scopus 로고
    • Peptide-mass finger-printing the ideal covering set for protein characterisation
    • Wise MJ, Littlejohn TG, Humphery-Smith I: Peptide-mass finger-printing and the ideal covering set for protein characterisation. Electrophoresis 1997, 18(8):1399-1409.
    • (1997) Electrophoresis , vol.18 , Issue.8 , pp. 1399-1409
    • Wise, M.J.1    Littlejohn, T.G.2    Humphery-Smith, I.3
  • 13
    • 3042662113 scopus 로고    scopus 로고
    • In silico proteome analysis to facilitate proteomics experiments using mass spectrometry
    • Cagney G, Amiri S, Premawaradena T, Lindo M, Emili A: In silico proteome analysis to facilitate proteomics experiments using mass spectrometry. Proteome Sci 2003, 1(1):5.
    • (2003) Proteome Sci , vol.1 , Issue.1 , pp. 5
    • Cagney, G.1    Amiri, S.2    Premawaradena, T.3    Lindo, M.4    Emili, A.5
  • 14
    • 0032127523 scopus 로고    scopus 로고
    • Specific cleavage of amino side chains of serine threonine in peptides proteins with S-ethyl-trifluorothioacetate vapor
    • Kamo M, Tsugita A: Specific cleavage of amino side chains of serine and threonine in peptides and proteins with S-ethyl-trifluorothioacetate vapor. Eur J Biochem 1998, 255(1): 162-171.
    • (1998) Eur J Biochem , vol.255 , Issue.1 , pp. 162-171
    • Kamo, M.1    Tsugita, A.2
  • 15
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL: Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001, 305(3):567-580.
    • (2001) J Mol Biol , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4
  • 16
    • 0036893269 scopus 로고    scopus 로고
    • Transmembrane helix predictions revisited
    • Chen CP, Kernytsky A, Rost B: Transmembrane helix predictions revisited. Protein Sci 2002, 11(12):2774-2791.
    • (2002) Protein Sci , vol.11 , Issue.12 , pp. 2774-2791
    • Chen, C.P.1    Kernytsky, A.2    Rost, B.3
  • 18
    • 1842427946 scopus 로고    scopus 로고
    • Acid-labile surfactant assists in-solution digestion of proteins resistant to enzymatic attack
    • Suder P, Bierczynska A, Konig S, Silberring J: Acid-labile surfactant assists in-solution digestion of proteins resistant to enzymatic attack. Rapid Commun Mass Spectrom 2004, 18(7):822-824.
    • (2004) Rapid Commun Mass Spectrom , vol.18 , Issue.7 , pp. 822-824
    • Suder, P.1    Bierczynska, A.2    Konig, S.3    Silberring, J.4
  • 19
    • 0031865293 scopus 로고    scopus 로고
    • Protein identification using mass spectrometric information
    • Fenyo D, Qin J, Chait BT: Protein identification using mass spectrometric information. Electrophoresis 1998, 19(6):998-1005.
    • (1998) Electrophoresis , vol.19 , Issue.6 , pp. 998-1005
    • Fenyo, D.1    Qin, J.2    Chait, B.T.3
  • 20
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, Cottrell JS: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20(18):3551-3567.
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 21
    • 0036104743 scopus 로고    scopus 로고
    • Scoring methods in MALDI peptide mass finger-printing: ChemScore, and the ChemApplex program
    • Parker KC: Scoring methods in MALDI peptide mass finger-printing: ChemScore, and the ChemApplex program. J Am Soc Mass Spectrom 2002, 13(1):22-39.
    • (2002) J Am Soc Mass Spectrom , vol.13 , Issue.1 , pp. 22-39
    • Parker, K.C.1
  • 22
    • 0035350894 scopus 로고    scopus 로고
    • Mass spectrometry allows direct identification of proteins in large genomes
    • Kuster B, Mortensen P, Andersen JS, Mann M: Mass spectrometry allows direct identification of proteins in large genomes. Proteomics 2001, 1(5):641-650.
    • (2001) Proteomics , vol.1 , Issue.5 , pp. 641-650
    • Kuster, B.1    Mortensen, P.2    Andersen, J.S.3    Mann, M.4
  • 23
    • 33744993755 scopus 로고    scopus 로고
    • Towards the complete membrane proteome: High coverage of integral membrane proteins through transmembrane peptide detection
    • Fischer F, Wolters D, Rogner M, Poetsch A: Towards the complete membrane proteome: High coverage of integral membrane proteins through transmembrane peptide detection. Mol Cell Proteomics 2005.
    • (2005) Mol Cell Proteomics
    • Fischer, F.1    Wolters, D.2    Rogner, M.3    Poetsch, A.4
  • 24
    • 17044391487 scopus 로고    scopus 로고
    • Mapping the membrane proteome of Corynebacterium glutamicum
    • Schluesener D, Fischer F, Kruip J, Rogner M, Poetsch A: Mapping the membrane proteome of Corynebacterium glutamicum. Proteomics 2005, 5(5):1317-1330.
    • (2005) Proteomics , vol.5 , Issue.5 , pp. 1317-1330
    • Schluesener, D.1    Fischer, F.2    Kruip, J.3    Rogner, M.4    Poetsch, A.5
  • 25
    • 33646582816 scopus 로고    scopus 로고
    • [http://www.ebi.ac.uk/integr8/FtpSearch.do?orgProteomeld=40].
  • 26
    • 33646556588 scopus 로고    scopus 로고
    • [http://www.expasy.org/tools/peptidecutter].
  • 27
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227(259):680-685.
    • (1970) Nature , vol.227 , Issue.259 , pp. 680-685
    • Laemmli, U.K.1
  • 28
    • 0023931883 scopus 로고
    • Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 R-250
    • Neuhoff V, Arold N, Taube D, Ehrhardt W: Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 1988, 9(6):255-262.
    • (1988) Electrophoresis , vol.9 , Issue.6 , pp. 255-262
    • Neuhoff, V.1    Arold, N.2    Taube, D.3    Ehrhardt, W.4
  • 29
    • 33646541537 scopus 로고    scopus 로고
    • [http://www.matrixscience.com].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.