-
1
-
-
0025763437
-
Enzyme catalysis: not different, just better
-
Knowles J. R, (1991) Enzyme catalysis: not different, just better. Nature 350: 121-124.
-
(1991)
Nature
, vol.350
, pp. 121-124
-
-
Knowles, J.R.1
-
2
-
-
0037008011
-
Multiple conformational changes in enzyme catalysis
-
Hammes G. G, (2002) Multiple conformational changes in enzyme catalysis. Biochemistry 41: 8221-8228.
-
(2002)
Biochemistry
, vol.41
, pp. 8221-8228
-
-
Hammes, G.G.1
-
3
-
-
0041821836
-
A perspective on enzyme catalysis
-
Benkovic S. J, Hammes-Schiffer S, (2003) A perspective on enzyme catalysis. Science 301: 1196-1202.
-
(2003)
Science
, vol.301
, pp. 1196-1202
-
-
Benkovic, S.J.1
Hammes-Schiffer, S.2
-
4
-
-
37249032102
-
Dynamic personalities of proteins
-
Henzler-Wildman K, Kern D, (2007) Dynamic personalities of proteins. Nature 450: 964-972.
-
(2007)
Nature
, vol.450
, pp. 964-972
-
-
Henzler-Wildman, K.1
Kern, D.2
-
6
-
-
52949089027
-
Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection
-
Sullivan S. M, Holyoak T, (2008) Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection. Proc Natl Acad Sci U S A 105: 13829-13834.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 13829-13834
-
-
Sullivan, S.M.1
Holyoak, T.2
-
7
-
-
65249090946
-
Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis
-
Weikl T. R, von Deuster C, (2009) Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis. Proteins 75: 104-110.
-
(2009)
Proteins
, vol.75
, pp. 104-110
-
-
Weikl, T.R.1
von Deuster, C.2
-
8
-
-
55549109430
-
Role of induced fit in enzyme specificity: a molecular forward/reverse switch
-
Johnson K. A, (2008) Role of induced fit in enzyme specificity: a molecular forward/reverse switch. J Biol Chem 283: 26297-26301.
-
(2008)
J Biol Chem
, vol.283
, pp. 26297-26301
-
-
Johnson, K.A.1
-
9
-
-
25844521524
-
Advances in kinetic protein crystallography
-
Bourgeois D, Royant A, (2005) Advances in kinetic protein crystallography. Curr Opin Struct Biol 15: 538-547.
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 538-547
-
-
Bourgeois, D.1
Royant, A.2
-
10
-
-
34247525538
-
Raman-assisted crystallography reveals end-on peroxide intermediates in a nonheme iron enzyme
-
Katona G, Carpentier P, Niviere V, Amara P, Adam V, et al. (2007) Raman-assisted crystallography reveals end-on peroxide intermediates in a nonheme iron enzyme. Science 316: 449-453.
-
(2007)
Science
, vol.316
, pp. 449-453
-
-
Katona, G.1
Carpentier, P.2
Niviere, V.3
Amara, P.4
Adam, V.5
-
11
-
-
0001858251
-
Application of a theory of enzyme specificity to protein synthesis
-
Koshland D. E, (1958) Application of a theory of enzyme specificity to protein synthesis. Proc Natl Acad Sci U S A 44: 98-104.
-
(1958)
Proc Natl Acad Sci U S A
, vol.44
, pp. 98-104
-
-
Koshland, D.E.1
-
12
-
-
44049103958
-
Residence time of receptor-ligand complexes and its effect on biological function
-
Tummino P. J, Copeland R. A, (2008) Residence time of receptor-ligand complexes and its effect on biological function. Biochemistry 47: 5481-5492.
-
(2008)
Biochemistry
, vol.47
, pp. 5481-5492
-
-
Tummino, P.J.1
Copeland, R.A.2
-
13
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
Boehr D. D, Nussinov R, Wright P. E, (2009) The role of dynamic conformational ensembles in biomolecular recognition. Nat Chem Biol 5: 789-796.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
14
-
-
0035432947
-
Molecular recognition by induced fit: how fit is the concept?
-
Bosshard H. R, (2001) Molecular recognition by induced fit: how fit is the concept? News Physiol Sci 16: 171-173.
-
(2001)
News Physiol Sci
, vol.16
, pp. 171-173
-
-
Bosshard, H.R.1
-
16
-
-
69549120472
-
Conformational selection or induced fit: a flux description of reaction mechanism
-
Hammes G. G, Chang Y. C, Oas T. G, (2009) Conformational selection or induced fit: a flux description of reaction mechanism. Proc Natl Acad Sci U S A 106: 13737-13741.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 13737-13741
-
-
Hammes, G.G.1
Chang, Y.C.2
Oas, T.G.3
-
17
-
-
0003818541
-
Structure and mechanism in protein science
-
New York, W.H. Feeman & Co
-
Fersht A. R, (1998) Structure and mechanism in protein science. New York W.H. Feeman & Co.
-
(1998)
-
-
Fersht, A.R.1
-
18
-
-
0023728105
-
The behavior and significance of slow-binding enzyme inhibitors
-
Morrison J. F, Walsh C. T, (1988) The behavior and significance of slow-binding enzyme inhibitors. Adv Enzymol Relat Areas Mol Biol 61: 201-301.
-
(1988)
Adv Enzymol Relat Areas Mol Biol
, vol.61
, pp. 201-301
-
-
Morrison, J.F.1
Walsh, C.T.2
-
19
-
-
23944514165
-
Evaluation of enzyme inhibitors in drug discovery: a guide for medicinal chemists and pharmacologists
-
New Jersey, John Wiley & Sons
-
Copeland R. A, (2005) Evaluation of enzyme inhibitors in drug discovery: a guide for medicinal chemists and pharmacologists. New Jersey John Wiley & Sons.
-
(2005)
-
-
Copeland, R.A.1
-
20
-
-
0037124050
-
Slow-tight binding inhibition of xylanase by an aspartic protease inhibitor: kinetic parameters and conformational changes that determine the affinity and selectivity of the bifunctional nature of the inhibitor
-
Dash C, Vathipadiekal V, George S. P, Rao M, (2002) Slow-tight binding inhibition of xylanase by an aspartic protease inhibitor: kinetic parameters and conformational changes that determine the affinity and selectivity of the bifunctional nature of the inhibitor. J Biol Chem 277: 17978-17986.
-
(2002)
J Biol Chem
, vol.277
, pp. 17978-17986
-
-
Dash, C.1
Vathipadiekal, V.2
George, S.P.3
Rao, M.4
-
21
-
-
9644301008
-
The crystal structure of E.coli 1-deoxy-D-xylulose-5-phosphate reductoisomerase in a ternary complex with the antimalarial compound fosmidomycin and NADPH reveals a tight-binding closed enzyme conformation
-
Mac Sweeney A, Lange R, Fernandes R. P, Schulz H, Dale G. E, et al. (2005) The crystal structure of E.coli 1-deoxy-D-xylulose-5-phosphate reductoisomerase in a ternary complex with the antimalarial compound fosmidomycin and NADPH reveals a tight-binding closed enzyme conformation. J Mol Biol 345: 115-127.
-
(2005)
J Mol Biol
, vol.345
, pp. 115-127
-
-
Mac Sweeney, A.1
Lange, R.2
Fernandes, R.P.3
Schulz, H.4
Dale, G.E.5
-
22
-
-
58149089923
-
Pimelic diphenylamide 106 is a slow, tight-binding inhibitor of class I histone deacetylases
-
Chou C. J, Herman D, Gottesfeld J. M, (2008) Pimelic diphenylamide 106 is a slow, tight-binding inhibitor of class I histone deacetylases. J Biol Chem 283: 35402-35409.
-
(2008)
J Biol Chem
, vol.283
, pp. 35402-35409
-
-
Chou, C.J.1
Herman, D.2
Gottesfeld, J.M.3
-
23
-
-
36749037830
-
Structure of the deacetylase LpxC bound to the antibiotic CHIR-090: Time-dependent inhibition and specificity in ligand binding
-
Barb A. W, Jiang L, Raetz C. R, Zhou P, (2007) Structure of the deacetylase LpxC bound to the antibiotic CHIR-090: Time-dependent inhibition and specificity in ligand binding. Proc Natl Acad Sci U S A 104: 18433-18438.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 18433-18438
-
-
Barb, A.W.1
Jiang, L.2
Raetz, C.R.3
Zhou, P.4
-
24
-
-
41849123834
-
Structure-activity relationships among the nitrogen containing bisphosphonates in clinical use and other analogues: time-dependent inhibition of human farnesyl pyrophosphate synthase
-
Dunford J. E, Kwaasi A. A, Rogers M. J, Barnett B. L, Ebetino F. H, et al. (2008) Structure-activity relationships among the nitrogen containing bisphosphonates in clinical use and other analogues: time-dependent inhibition of human farnesyl pyrophosphate synthase. J Med Chem 51: 2187-2195.
-
(2008)
J Med Chem
, vol.51
, pp. 2187-2195
-
-
Dunford, J.E.1
Kwaasi, A.A.2
Rogers, M.J.3
Barnett, B.L.4
Ebetino, F.H.5
-
25
-
-
33847726934
-
Slow-onset inhibition of fumarylacetoacetate hydrolase by phosphinate mimics of the tetrahedral intermediate: kinetics, crystal structure and pharmacokinetics
-
Bateman R. L, Ashworth J, Witte J. F, Baker L. J, Bhanumoorthy P, et al. (2007) Slow-onset inhibition of fumarylacetoacetate hydrolase by phosphinate mimics of the tetrahedral intermediate: kinetics, crystal structure and pharmacokinetics. Biochem J 402: 251-260.
-
(2007)
Biochem J
, vol.402
, pp. 251-260
-
-
Bateman, R.L.1
Ashworth, J.2
Witte, J.F.3
Baker, L.J.4
Bhanumoorthy, P.5
-
26
-
-
33748325882
-
Drug-target residence time and its implications for lead optimization
-
Copeland R. A, Pompliano D. L, Meek T. D, (2006) Drug-target residence time and its implications for lead optimization. Nat Rev Drug Discov 5: 730-739.
-
(2006)
Nat Rev Drug Discov
, vol.5
, pp. 730-739
-
-
Copeland, R.A.1
Pompliano, D.L.2
Meek, T.D.3
-
27
-
-
0000383210
-
Actinonin: an antibiotic substance produced by an actinomycete
-
Gordon J. J, Kelly B. K, Miller G. A, (1962) Actinonin: an antibiotic substance produced by an actinomycete. Nature 195: 701-702.
-
(1962)
Nature
, vol.195
, pp. 701-702
-
-
Gordon, J.J.1
Kelly, B.K.2
Miller, G.A.3
-
28
-
-
0034673093
-
Actinonin, a naturally occurring antibacterial agent, is a potent deformylase inhibitor
-
Chen D. Z, Patel D. V, Hackbarth C. J, Wang W, Dreyer G, et al. (2000) Actinonin, a naturally occurring antibacterial agent, is a potent deformylase inhibitor. Biochemistry 39: 1256-1262.
-
(2000)
Biochemistry
, vol.39
, pp. 1256-1262
-
-
Chen, D.Z.1
Patel, D.V.2
Hackbarth, C.J.3
Wang, W.4
Dreyer, G.5
-
29
-
-
19944427671
-
Mechanism of time-dependent inhibition of polypeptide deformylase by actinonin
-
Van Aller G. S, Nandigama R, Petit C. M, Dewolf W. E Jr, Quinn C. J, et al. (2005) Mechanism of time-dependent inhibition of polypeptide deformylase by actinonin. Biochemistry 44: 253-260.
-
(2005)
Biochemistry
, vol.44
, pp. 253-260
-
-
van Aller, G.S.1
Nandigama, R.2
Petit, C.M.3
Dewolf Jr., W.E.4
Quinn, C.J.5
-
30
-
-
0001267065
-
Characterization of cobalt(II)-substituted peptide deformylase: function of the metal ion and the catalytic residue Glu-133
-
Rajagopalan P. T, Grimme S, Pei D, (2000) Characterization of cobalt(II)-substituted peptide deformylase: function of the metal ion and the catalytic residue Glu-133. Biochemistry 39: 791-799.
-
(2000)
Biochemistry
, vol.39
, pp. 791-799
-
-
Rajagopalan, P.T.1
Grimme, S.2
Pei, D.3
-
31
-
-
0029959716
-
Molecular recognition governing the initiation of translation in Escherichia coli. A review
-
Schmitt E, Guillon J. M, Meinnel T, Mechulam Y, Dardel F, et al. (1996) Molecular recognition governing the initiation of translation in Escherichia coli. A review. Biochimie 78: 543-554.
-
(1996)
Biochimie
, vol.78
, pp. 543-554
-
-
Schmitt, E.1
Guillon, J.M.2
Meinnel, T.3
Mechulam, Y.4
Dardel, F.5
-
32
-
-
68249107043
-
Cotranslational processing mechanisms: towards a dynamic 3D model
-
Giglione C, Fieulaine S, Meinnel T, (2009) Cotranslational processing mechanisms: towards a dynamic 3D model. Trends Biochem Sci 34: 417-426.
-
(2009)
Trends Biochem Sci
, vol.34
, pp. 417-426
-
-
Giglione, C.1
Fieulaine, S.2
Meinnel, T.3
-
33
-
-
1942421679
-
Slow-binding inhibition of peptide deformylase by cyclic peptidomimetics as revealed by a new spectrophotometric assay
-
Nguyen K. T, Hu X, Pei D, (2004) Slow-binding inhibition of peptide deformylase by cyclic peptidomimetics as revealed by a new spectrophotometric assay. Bioorg Chem 32: 178-191.
-
(2004)
Bioorg Chem
, vol.32
, pp. 178-191
-
-
Nguyen, K.T.1
Hu, X.2
Pei, D.3
-
34
-
-
0031730185
-
Iron center, substrate recognition and mechanism of peptide deformylase
-
Becker A, Schlichting I, Kabsch W, Groche D, Schultz S, et al. (1998) Iron center, substrate recognition and mechanism of peptide deformylase. Nat Struct Biol 5: 1053-1058.
-
(1998)
Nat Struct Biol
, vol.5
, pp. 1053-1058
-
-
Becker, A.1
Schlichting, I.2
Kabsch, W.3
Groche, D.4
Schultz, S.5
-
35
-
-
0036077847
-
The crystal structures of four peptide deformylases bound to the antibiotic actinonin reveal two distinct types: a platform for the structure-based design of antibacterial agents
-
Guilloteau J. P, Mathieu M, Giglione C, Blanc V, Dupuy A, et al. (2002) The crystal structures of four peptide deformylases bound to the antibiotic actinonin reveal two distinct types: a platform for the structure-based design of antibacterial agents. J Mol Biol 320: 951-962.
-
(2002)
J Mol Biol
, vol.320
, pp. 951-962
-
-
Guilloteau, J.P.1
Mathieu, M.2
Giglione, C.3
Blanc, V.4
Dupuy, A.5
-
36
-
-
0034329475
-
Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms
-
Giglione C, Serero A, Pierre M, Boisson B, Meinnel T, (2000) Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms. EMBO J 19: 5916-5929.
-
(2000)
EMBO J
, vol.19
, pp. 5916-5929
-
-
Giglione, C.1
Serero, A.2
Pierre, M.3
Boisson, B.4
Meinnel, T.5
-
37
-
-
0035824874
-
Distinctive features of the two classes of eukaryotic peptide deformylases
-
Serero A, Giglione C, Meinnel T, (2001) Distinctive features of the two classes of eukaryotic peptide deformylases. J Mol Biol 314: 695-708.
-
(2001)
J Mol Biol
, vol.314
, pp. 695-708
-
-
Serero, A.1
Giglione, C.2
Meinnel, T.3
-
38
-
-
0032540851
-
Solution structure of nickel-peptide deformylase
-
Dardel F, Ragusa S, Lazennec C, Blanquet S, Meinnel T, (1998) Solution structure of nickel-peptide deformylase. J Mol Biol 280: 501-513.
-
(1998)
J Mol Biol
, vol.280
, pp. 501-513
-
-
Dardel, F.1
Ragusa, S.2
Lazennec, C.3
Blanquet, S.4
Meinnel, T.5
-
39
-
-
0030603915
-
A new subclass of the zinc metalloproteases superfamily revealed by the solution structure of peptide deformylase
-
Meinnel T, Blanquet S, Dardel F, (1996) A new subclass of the zinc metalloproteases superfamily revealed by the solution structure of peptide deformylase. J Mol Biol 262: 375-386.
-
(1996)
J Mol Biol
, vol.262
, pp. 375-386
-
-
Meinnel, T.1
Blanquet, S.2
Dardel, F.3
-
40
-
-
67349101195
-
1H, 13C and 15N NMR assignments of the E. coli peptide deformylase in complex with a natural inhibitor called actinonin
-
Larue V, Seijo B, Tisne C, Dardel F, (2009) 1H, 13C and 15N NMR assignments of the E. coli peptide deformylase in complex with a natural inhibitor called actinonin. Biomolecular NMR Assignments 3: 153-155.
-
(2009)
Biomolecular NMR Assignments
, vol.3
, pp. 153-155
-
-
Larue, V.1
Seijo, B.2
Tisne, C.3
Dardel, F.4
-
41
-
-
68849114935
-
Ligand-induced changes in the structure and dynamics of Escherichia coli peptide deformylase
-
Amero C. D, Byerly D. W, McElroy C. A, Simmons A, Foster M. P, (2009) Ligand-induced changes in the structure and dynamics of Escherichia coli peptide deformylase. Biochemistry 48: 7595-7607.
-
(2009)
Biochemistry
, vol.48
, pp. 7595-7607
-
-
Amero, C.D.1
Byerly, D.W.2
McElroy, C.A.3
Simmons, A.4
Foster, M.P.5
-
42
-
-
61749085983
-
Delineation of alternative conformational states in Escherichia coli peptide deformylase via thermodynamic studies for the binding of actinonin
-
Berg A. K, Srivastava D. K, (2009) Delineation of alternative conformational states in Escherichia coli peptide deformylase via thermodynamic studies for the binding of actinonin. Biochemistry 48: 1584-1594.
-
(2009)
Biochemistry
, vol.48
, pp. 1584-1594
-
-
Berg, A.K.1
Srivastava, D.K.2
-
43
-
-
29644438077
-
Novel conformational states of peptide deformylase from pathogenic bacterium Leptospira interrogans: implications for population shift
-
Zhou Z, Song X, Gong W, (2005) Novel conformational states of peptide deformylase from pathogenic bacterium Leptospira interrogans: implications for population shift. J Biol Chem 280: 42391-42396.
-
(2005)
J Biol Chem
, vol.280
, pp. 42391-42396
-
-
Zhou, Z.1
Song, X.2
Gong, W.3
-
44
-
-
0035143273
-
Antibiotic activity and characterization of BB-3497, a novel peptide deformylase inhibitor
-
Clements J. M, Beckett R. P, Brown A, Catlin G, Lobell M, et al. (2001) Antibiotic activity and characterization of BB-3497, a novel peptide deformylase inhibitor. Antimicrob Agents Chemother 45: 563-570.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, pp. 563-570
-
-
Clements, J.M.1
Beckett, R.P.2
Brown, A.3
Catlin, G.4
Lobell, M.5
-
45
-
-
6344280763
-
Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent
-
Yoon H. J, Kim H. L, Lee S. K, Kim H. W, Lee J. Y, et al. (2004) Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent. Proteins 57: 639-642.
-
(2004)
Proteins
, vol.57
, pp. 639-642
-
-
Yoon, H.J.1
Kim, H.L.2
Lee, S.K.3
Kim, H.W.4
Lee, J.Y.5
-
46
-
-
24344468253
-
Structure analysis of peptide deformylase from Bacillus cereus
-
Moon J. H, Park J. K, Kim E. E, (2005) Structure analysis of peptide deformylase from Bacillus cereus. Proteins 61: 217-220.
-
(2005)
Proteins
, vol.61
, pp. 217-220
-
-
Moon, J.H.1
Park, J.K.2
Kim, E.E.3
-
47
-
-
1642534339
-
Peptidyl aldehydes as slow-binding inhibitors of dual-specificity phosphatases
-
Park J, Fu H, Pei D, (2004) Peptidyl aldehydes as slow-binding inhibitors of dual-specificity phosphatases. Bioorg Med Chem Lett 14: 685-687.
-
(2004)
Bioorg Med Chem Lett
, vol.14
, pp. 685-687
-
-
Park, J.1
Fu, H.2
Pei, D.3
-
48
-
-
40549119840
-
Isothermal titration calorimetry
-
17-Unit
-
Velazquez-Campoy A, Ohtaka H, Nezami A, Muzammil S, Freire E, (2004) Isothermal titration calorimetry. Curr Protoc Cell Biol Chapter pp. 17-Unit 17 18.
-
(2004)
Curr Protoc Cell Biol Chapter
, pp. 17-18
-
-
Velazquez-Campoy, A.1
Ohtaka, H.2
Nezami, A.3
Muzammil, S.4
Freire, E.5
-
49
-
-
33846197066
-
Discovery and refinement of a new structural class of potent peptide deformylase inhibitors
-
Boularot A, Giglione C, Petit S, Duroc Y, Sousa R. A, et al. (2007) Discovery and refinement of a new structural class of potent peptide deformylase inhibitors. J Med Chem 50: 10-20.
-
(2007)
J Med Chem
, vol.50
, pp. 10-20
-
-
Boularot, A.1
Giglione, C.2
Petit, S.3
Duroc, Y.4
Sousa, R.A.5
-
50
-
-
0036716795
-
N-alkyl urea hydroxamic acids as a new class of peptide deformylase inhibitors with antibacterial activity
-
Hackbarth C. J, Chen D. Z, Lewis J. G, Clark K, Mangold J. B, et al. (2002) N-alkyl urea hydroxamic acids as a new class of peptide deformylase inhibitors with antibacterial activity. Antimicrob Agents Chemother 46: 2752-2764.
-
(2002)
Antimicrob Agents Chemother
, vol.46
, pp. 2752-2764
-
-
Hackbarth, C.J.1
Chen, D.Z.2
Lewis, J.G.3
Clark, K.4
Mangold, J.B.5
-
51
-
-
0033603628
-
Substrate recognition and selectivity of peptide deformylase. Similarities and differences with metzincins and thermolysin
-
Ragusa S, Mouchet P, Lazennec C, Dive V, Meinnel T, (1999) Substrate recognition and selectivity of peptide deformylase. Similarities and differences with metzincins and thermolysin. J Mol Biol 289: 1445-1457.
-
(1999)
J Mol Biol
, vol.289
, pp. 1445-1457
-
-
Ragusa, S.1
Mouchet, P.2
Lazennec, C.3
Dive, V.4
Meinnel, T.5
-
52
-
-
71449103005
-
Hidden alternative structures of proline isomerase essential for catalysis
-
Fraser J. S, Clarkson M. W, Degnan S. C, Erion R, Kern D, et al. (2009) Hidden alternative structures of proline isomerase essential for catalysis. Nature 462: 669-673.
-
(2009)
Nature
, vol.462
, pp. 669-673
-
-
Fraser, J.S.1
Clarkson, M.W.2
Degnan, S.C.3
Erion, R.4
Kern, D.5
-
53
-
-
77953977241
-
Automated electron-density sampling reveals widespread conformational polymorphism in proteins
-
Lang P. T, Ng H. L, Fraser J. S, Corn J. E, Echols N, et al. (2010) Automated electron-density sampling reveals widespread conformational polymorphism in proteins. Protein Sci 19: 1420-1431.
-
(2010)
Protein Sci
, vol.19
, pp. 1420-1431
-
-
Lang, P.T.1
Ng, H.L.2
Fraser, J.S.3
Corn, J.E.4
Echols, N.5
-
54
-
-
0033528708
-
Design and synthesis of substrate analogue inhibitors of peptide deformylase
-
Meinnel T, Patiny L, Ragusa S, Blanquet S, (1999) Design and synthesis of substrate analogue inhibitors of peptide deformylase. Biochemistry 38: 4287-4295.
-
(1999)
Biochemistry
, vol.38
, pp. 4287-4295
-
-
Meinnel, T.1
Patiny, L.2
Ragusa, S.3
Blanquet, S.4
-
55
-
-
0014211618
-
On the size of the active site in proteases. I. Papain
-
Schechter I, Berger A, (1967) On the size of the active site in proteases. I. Papain. Bochem Biophys Res Commun 27: 157-162.
-
(1967)
Bochem Biophys Res Commun
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
-
56
-
-
0021828928
-
Hydrogen bonding and biological specificity analysed by protein engineering
-
Fersht A. R, Shi J. P, Knill-Jones J, Lowe D. M, Wilkinson A. J, et al. (1985) Hydrogen bonding and biological specificity analysed by protein engineering. Nature 314: 235-238.
-
(1985)
Nature
, vol.314
, pp. 235-238
-
-
Fersht, A.R.1
Shi, J.P.2
Knill-Jones, J.3
Lowe, D.M.4
Wilkinson, A.J.5
-
57
-
-
0033580613
-
Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six Ser -> Ala mutants
-
Takano K, Yamagata Y, Kubota M, Funahashi J, Fujii S, et al. (1999) Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six Ser -> Ala mutants. Biochemistry 38: 6623-6629.
-
(1999)
Biochemistry
, vol.38
, pp. 6623-6629
-
-
Takano, K.1
Yamagata, Y.2
Kubota, M.3
Funahashi, J.4
Fujii, S.5
-
58
-
-
0035885234
-
Deformylase as a novel antibacterial target
-
Yuan Z, Trias J, White R. J, (2001) Deformylase as a novel antibacterial target. Drug Discov Today 6: 954-961.
-
(2001)
Drug Discov Today
, vol.6
, pp. 954-961
-
-
Yuan, Z.1
Trias, J.2
White, R.J.3
-
59
-
-
33744979775
-
Docking studies of Nickel-Peptide deformylase (PDF) inhibitors: exploring the new binding pockets
-
Wang Q, Zhang D, Wang J, Cai Z, Xu W, (2006) Docking studies of Nickel-Peptide deformylase (PDF) inhibitors: exploring the new binding pockets. Biophys Chem 122: 43-49.
-
(2006)
Biophys Chem
, vol.122
, pp. 43-49
-
-
Wang, Q.1
Zhang, D.2
Wang, J.3
Cai, Z.4
Xu, W.5
-
60
-
-
0036377233
-
Enzymatic properties of a new peptide deformylase from pathogenic bacterium Leptospira interrogans
-
Li Y, Chen Z, Gong W, (2002) Enzymatic properties of a new peptide deformylase from pathogenic bacterium Leptospira interrogans. Biochem Biophys Res Commun 295: 884-889.
-
(2002)
Biochem Biophys Res Commun
, vol.295
, pp. 884-889
-
-
Li, Y.1
Chen, Z.2
Gong, W.3
-
61
-
-
0035894590
-
Characterization of an eukaryotic peptide deformylase from Plasmodium falciparum
-
Bracchi-Ricard V, Nguyen K. T, Zhou Y, Rajagopalan P. T, Chakrabarti D, et al. (2001) Characterization of an eukaryotic peptide deformylase from Plasmodium falciparum. Arch Biochem Biophys 396: 162-170.
-
(2001)
Arch Biochem Biophys
, vol.396
, pp. 162-170
-
-
Bracchi-Ricard, V.1
Nguyen, K.T.2
Zhou, Y.3
Rajagopalan, P.T.4
Chakrabarti, D.5
-
62
-
-
0034818097
-
Eukaryotic peptide deformylases. Nuclear-encoded and chloroplast-targeted enzymes in Arabidopsis
-
Dirk L. M, Williams M. A, Houtz R. L, (2001) Eukaryotic peptide deformylases. Nuclear-encoded and chloroplast-targeted enzymes in Arabidopsis. Plant Physiol 127: 97-107.
-
(2001)
Plant Physiol
, vol.127
, pp. 97-107
-
-
Dirk, L.M.1
Williams, M.A.2
Houtz, R.L.3
-
63
-
-
48249100930
-
Insights into the substrate specificity of plant peptide deformylase, an essential enzyme with potential for the development of novel biotechnology applications in agriculture
-
Dirk L. M, Schmidt J. J, Cai Y, Barnes J. C, Hanger K. M, et al. (2008) Insights into the substrate specificity of plant peptide deformylase, an essential enzyme with potential for the development of novel biotechnology applications in agriculture. Biochem J 413: 417-427.
-
(2008)
Biochem J
, vol.413
, pp. 417-427
-
-
Dirk, L.M.1
Schmidt, J.J.2
Cai, Y.3
Barnes, J.C.4
Hanger, K.M.5
-
64
-
-
24044453721
-
Structural snapshots of MTA/AdoHcy nucleosidase along the reaction coordinate provide insights into enzyme and nucleoside flexibility during catalysis
-
Lee J. E, Smith G. D, Horvatin C, Huang D. J, Cornell K. A, et al. (2005) Structural snapshots of MTA/AdoHcy nucleosidase along the reaction coordinate provide insights into enzyme and nucleoside flexibility during catalysis. J Mol Biol 352: 559-574.
-
(2005)
J Mol Biol
, vol.352
, pp. 559-574
-
-
Lee, J.E.1
Smith, G.D.2
Horvatin, C.3
Huang, D.J.4
Cornell, K.A.5
-
65
-
-
33846019283
-
Seeing the process of histidine phosphorylation in human bisphosphoglycerate mutase
-
Wang Y, Liu L, Wei Z, Cheng Z, Lin Y, et al. (2006) Seeing the process of histidine phosphorylation in human bisphosphoglycerate mutase. J Biol Chem 281: 39642-39648.
-
(2006)
J Biol Chem
, vol.281
, pp. 39642-39648
-
-
Wang, Y.1
Liu, L.2
Wei, Z.3
Cheng, Z.4
Lin, Y.5
-
66
-
-
34848899274
-
Enzymatic capture of an extrahelical thymine in the search for uracil in DNA
-
Parker J. B, Bianchet M. A, Krosky D. J, Friedman J. I, Amzel L. M, et al. (2007) Enzymatic capture of an extrahelical thymine in the search for uracil in DNA. Nature 449: 433-437.
-
(2007)
Nature
, vol.449
, pp. 433-437
-
-
Parker, J.B.1
Bianchet, M.A.2
Krosky, D.J.3
Friedman, J.I.4
Amzel, L.M.5
-
67
-
-
2342418543
-
ACE2 X-ray structures reveal a large hinge-bending motion important for inhibitor binding and catalysis
-
Towler P, Staker B, Prasad S. G, Menon S, Tang J, et al. (2004) ACE2 X-ray structures reveal a large hinge-bending motion important for inhibitor binding and catalysis. J Biol Chem 279: 17996-18007.
-
(2004)
J Biol Chem
, vol.279
, pp. 17996-18007
-
-
Towler, P.1
Staker, B.2
Prasad, S.G.3
Menon, S.4
Tang, J.5
-
68
-
-
0037666888
-
Implications of protein flexibility for drug discovery
-
Teague S. J, (2003) Implications of protein flexibility for drug discovery. Nat Rev Drug Discov 2: 527-541.
-
(2003)
Nat Rev Drug Discov
, vol.2
, pp. 527-541
-
-
Teague, S.J.1
-
69
-
-
0036384359
-
Enzymatic catalysis in crystals of Escherichia coli maltodextrin phosphorylase
-
Geremia S, Campagnolo M, Schinzel R, Johnson L. N, (2002) Enzymatic catalysis in crystals of Escherichia coli maltodextrin phosphorylase. J Mol Biol 322: 413-423.
-
(2002)
J Mol Biol
, vol.322
, pp. 413-423
-
-
Geremia, S.1
Campagnolo, M.2
Schinzel, R.3
Johnson, L.N.4
-
70
-
-
18344395134
-
Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site
-
Pargellis C, Tong L, Churchill L, Cirillo P. F, Gilmore T, et al. (2002) Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site. Nat Struct Biol 9: 268-272.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 268-272
-
-
Pargellis, C.1
Tong, L.2
Churchill, L.3
Cirillo, P.F.4
Gilmore, T.5
-
71
-
-
0031025121
-
Formate dehydrogenase-coupled spectrophotometric assay of peptide deformylase
-
Lazennec C, Meinnel T, (1997) Formate dehydrogenase-coupled spectrophotometric assay of peptide deformylase. Anal Biochem 244: 180-182.
-
(1997)
Anal Biochem
, vol.244
, pp. 180-182
-
-
Lazennec, C.1
Meinnel, T.2
-
72
-
-
0015327378
-
A linear equation that describes the steady-state kinetics of enzymes and subcellular particles interacting with tightly bound inhibitors
-
Henderson P. J, (1972) A linear equation that describes the steady-state kinetics of enzymes and subcellular particles interacting with tightly bound inhibitors. Biochem J 127: 321-333.
-
(1972)
Biochem J
, vol.127
, pp. 321-333
-
-
Henderson, P.J.1
-
73
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch W, (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Cryst 26: 795-800.
-
(1993)
J Appl Cryst
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
74
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
McCoy A. J, Grosse-Kunstleve R. W, Storoni L. C, Read R. J, (2005) Likelihood-enhanced fast translation functions. Acta Crystallogr D Biol Crystallogr 61: 458-464.
-
(2005)
Acta Crystallogr D Biol Crystallogr
, vol.61
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
75
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A. T, Adams P. D, Clore G. M, DeLano W. L, Gros P, et al. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 54 (Pt 5): 905-921.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, Issue.Pt 5
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
-
76
-
-
1842611335
-
An improved crystal form of Plasmodium falciparum peptide deformylase
-
Robien M. A, Nguyen K. T, Kumar A, Hirsh I, Turley S, et al. (2004) An improved crystal form of Plasmodium falciparum peptide deformylase. Protein Sci 13: 1155-1163.
-
(2004)
Protein Sci
, vol.13
, pp. 1155-1163
-
-
Robien, M.A.1
Nguyen, K.T.2
Kumar, A.3
Hirsh, I.4
Turley, S.5
-
77
-
-
0002908272
-
TURBO-FRODO
-
In: Graphics S, editors, Mountain View, CA
-
Roussel A, Cambillau C, (1989) TURBO-FRODO. In: Graphics S, editors. Silicon Graphics geometry partners directory Mountain View, CA pp. 77-78.
-
(1989)
Silicon Graphics Geometry Partners Directory
, pp. 77-78
-
-
Roussel, A.1
Cambillau, C.2
-
79
-
-
0027169515
-
Main-chain bond lengths and bond angles in protein structures
-
Laskowski R. A, Moss D. S, Thornton J. M, (1993) Main-chain bond lengths and bond angles in protein structures. J Mol Biol 231: 1049-1067.
-
(1993)
J Mol Biol
, vol.231
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
80
-
-
0032961270
-
ESPript: analysis of multiple sequence alignments in PostScript
-
Gouet P, Courcelle E, Stuart D. I, Metoz F, (1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15: 305-308.
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
81
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C, (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
82
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle R. F, (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132.
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
83
-
-
0017157584
-
A simplified representation of protein conformations for rapid simulation of protein folding
-
Levitt M, (1976) A simplified representation of protein conformations for rapid simulation of protein folding. J Mol Biol 104: 59-107.
-
(1976)
J Mol Biol
, vol.104
, pp. 59-107
-
-
Levitt, M.1
|