-
1
-
-
0033520969
-
Quality control by DNA repair
-
Lindahl, T. & Wood, R. D. Quality control by DNA repair. Science 286, 1897-1905 (1999).
-
(1999)
Science
, vol.286
, pp. 1897-1905
-
-
Lindahl, T.1
Wood, R.D.2
-
2
-
-
0042342532
-
A mechanistic perspective on the chemistry of DNA repair glycosylases
-
Stivers, J. T. & Jiang, Y. L. A mechanistic perspective on the chemistry of DNA repair glycosylases. Chem. Rev. 103, 2729-2759 (2003).
-
(2003)
Chem. Rev
, vol.103
, pp. 2729-2759
-
-
Stivers, J.T.1
Jiang, Y.L.2
-
3
-
-
31644442238
-
Linking uracil base excision repair and 5-fluorouracil toxicity in yeast
-
Seiple, L., Jaruga, P., Dizdaroglu, M. & Stivers, J. T. Linking uracil base excision repair and 5-fluorouracil toxicity in yeast. Nucleic Acids Res. 34, 140-151 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 140-151
-
-
Seiple, L.1
Jaruga, P.2
Dizdaroglu, M.3
Stivers, J.T.4
-
4
-
-
33847621554
-
Uracil in DNA - General mutagen, but normal intermediate in acquired immunity
-
Kavli, B., Otterlei, M., Slupphaug, G. & Krokan, H. E. Uracil in DNA - General mutagen, but normal intermediate in acquired immunity. DNA Repair 6, 505-516 (2006).
-
(2006)
DNA Repair
, vol.6
, pp. 505-516
-
-
Kavli, B.1
Otterlei, M.2
Slupphaug, G.3
Krokan, H.E.4
-
5
-
-
0029904839
-
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
Slupphaug, G. et al. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature 384, 87-92 (1996).
-
(1996)
Nature
, vol.384
, pp. 87-92
-
-
Slupphaug, G.1
-
6
-
-
0034625082
-
Uracil-DNA glycosylase-DNA substrate and product structures: Conformational strain promotes catalytic efficiency by coupled stereoelectronic effects
-
Parikh, S. S. et al. Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. Proc. Natl Acad. Sci. USA 97, 5083-5088 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 5083-5088
-
-
Parikh, S.S.1
-
7
-
-
0030035663
-
Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase
-
Kavli, B. et al. Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase. EMBO J. 15, 3442-3447 (1996).
-
(1996)
EMBO J
, vol.15
, pp. 3442-3447
-
-
Kavli, B.1
-
8
-
-
16544386633
-
Dynamic opening of DNA during the enzymatic search for a damaged base
-
Cao, C., Jiang, Y. L., Stivers, J. T. & Song, F. Dynamic opening of DNA during the enzymatic search for a damaged base. Nature Struct. Mol. Biol. 11, 1230-1236 (2004).
-
(2004)
Nature Struct. Mol. Biol
, vol.11
, pp. 1230-1236
-
-
Cao, C.1
Jiang, Y.L.2
Stivers, J.T.3
Song, F.4
-
9
-
-
33749508308
-
The catalytic power of uracil DNA glycosylase in the opening of thymine base pairs
-
Cao, C., Jiang, Y. L., Krosky, D. J. & Stivers, J. T. The catalytic power of uracil DNA glycosylase in the opening of thymine base pairs. J. Am. Chem. Soc. 128, 13034-13035 (2006).
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 13034-13035
-
-
Cao, C.1
Jiang, Y.L.2
Krosky, D.J.3
Stivers, J.T.4
-
10
-
-
17644366825
-
The origins of high-affinity enzyme binding to an extrahelical DNA base
-
Krosky, D. J., Song, F. & Stivers, J. T. The origins of high-affinity enzyme binding to an extrahelical DNA base. Biochemistry 44, 5949-5959 (2005).
-
(2005)
Biochemistry
, vol.44
, pp. 5949-5959
-
-
Krosky, D.J.1
Song, F.2
Stivers, J.T.3
-
11
-
-
1842479316
-
Linear free energy correlations for enzymatic base flipping: How do damaged base pairs facilitate specific recognition?
-
Krosky, D. J., Schwarz, F. P. & Stivers, J. T. Linear free energy correlations for enzymatic base flipping: How do damaged base pairs facilitate specific recognition? Biochemistry 43, 4188-4195 (2004).
-
(2004)
Biochemistry
, vol.43
, pp. 4188-4195
-
-
Krosky, D.J.1
Schwarz, F.P.2
Stivers, J.T.3
-
12
-
-
0030012860
-
Non-hydrogen bonding 'terminator' nucleosides increase the 3′-end homogeneity of enzymatic RNA and DNA synthesis
-
Moran, S., Ren, R. X. F., Sheils, C. J., Rumney, S. & Kool, E. T. Non-hydrogen bonding 'terminator' nucleosides increase the 3′-end homogeneity of enzymatic RNA and DNA synthesis. Nucleic Acids Res. 24, 2044-2052 (1996).
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2044-2052
-
-
Moran, S.1
Ren, R.X.F.2
Sheils, C.J.3
Rumney, S.4
Kool, E.T.5
-
13
-
-
0037125932
-
Mutational analysis of the base flipping mechanism of uracil DNA glycosylase
-
Jiang, Y. L. & Stivers, J. T. Mutational analysis of the base flipping mechanism of uracil DNA glycosylase. Biochemistry 41, 11236-11247 (2002).
-
(2002)
Biochemistry
, vol.41
, pp. 11236-11247
-
-
Jiang, Y.L.1
Stivers, J.T.2
-
14
-
-
15844379169
-
Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA
-
Banerjee, A., Yang, W., Karplus, M. & Verdine, G. L. Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature 434, 612-618 (2005).
-
(2005)
Nature
, vol.434
, pp. 612-618
-
-
Banerjee, A.1
Yang, W.2
Karplus, M.3
Verdine, G.L.4
-
15
-
-
0036009327
-
Direct visualization of a DNA glycosylase searching for damage
-
Chen, L., Haushalter, K. A., Lieber, C. M. & Verdine, G. L. Direct visualization of a DNA glycosylase searching for damage. Chem. Biol. 9, 345-350 (2002).
-
(2002)
Chem. Biol
, vol.9
, pp. 345-350
-
-
Chen, L.1
Haushalter, K.A.2
Lieber, C.M.3
Verdine, G.L.4
-
16
-
-
0028864424
-
Studies of base pair kinetics by NMR measurement of proton exchange
-
Gueron, M. & Leroy, J. Studies of base pair kinetics by NMR measurement of proton exchange. Methods Enzymol. 261, 383-413 (1995).
-
(1995)
Methods Enzymol
, vol.261
, pp. 383-413
-
-
Gueron, M.1
Leroy, J.2
-
17
-
-
0037107340
-
Alteration of A•T base-pair opening kinetics by the ammonium cation in DNA A-tracts
-
Snoussi, K. & Leroy, J. L. Alteration of A•T base-pair opening kinetics by the ammonium cation in DNA A-tracts. Biochemistry 41, 12467-12474 (2002).
-
(2002)
Biochemistry
, vol.41
, pp. 12467-12474
-
-
Snoussi, K.1
Leroy, J.L.2
-
18
-
-
33644511436
-
Structure of a DNA glycosylase searching for lesions
-
Banerjee, A., Santos, W. L. & Verdine, G. L. Structure of a DNA glycosylase searching for lesions. Science 311, 1153-1157 (2006).
-
(2006)
Science
, vol.311
, pp. 1153-1157
-
-
Banerjee, A.1
Santos, W.L.2
Verdine, G.L.3
-
19
-
-
0000269878
-
Applications of imino proton exchange to nucleic acid kinetics and structures
-
ed. Sarma, R. H, Adenine press, New York
-
Gueron, M. et al. Applications of imino proton exchange to nucleic acid kinetics and structures. In Structure and Methods (ed. Sarma, R. H.) 113-137 (Adenine press, New York, 1990).
-
(1990)
Structure and Methods
, pp. 113-137
-
-
Gueron, M.1
-
20
-
-
0026737976
-
Kinetics and energetics of base-pair opening in 5′-d(CGCGAATTCGCG)-3′ and a substituted dodecamer containing G•T mismatches
-
Moe, J. G. & Russu, I. M. Kinetics and energetics of base-pair opening in 5′-d(CGCGAATTCGCG)-3′ and a substituted dodecamer containing G•T mismatches. Biochemistry 31, 8421-8428 (1992).
-
(1992)
Biochemistry
, vol.31
, pp. 8421-8428
-
-
Moe, J.G.1
Russu, I.M.2
-
21
-
-
0038018858
-
Covalent trapping of protein-DNA complexes
-
Verdine, G. L. & Norman, D. P. Covalent trapping of protein-DNA complexes. Annu. Rev. Biochem. 72, 337-366 (2003).
-
(2003)
Annu. Rev. Biochem
, vol.72
, pp. 337-366
-
-
Verdine, G.L.1
Norman, D.P.2
-
22
-
-
0029818198
-
Naphthalene, phenanthrene, and pyrene as DNA base analogues: Synthesis, structure, and fluorescence in DNA
-
Ren, R. X.-F., Chaudhuri, N. C., Paris, P. L., Rumney, S. & Kool, E. T. Naphthalene, phenanthrene, and pyrene as DNA base analogues: Synthesis, structure, and fluorescence in DNA. J. Am. Chem. Soc. 118, 7671-7678 (1996).
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 7671-7678
-
-
Ren, R.X.-F.1
Chaudhuri, N.C.2
Paris, P.L.3
Rumney, S.4
Kool, E.T.5
-
23
-
-
0033554424
-
The role of electrophilic and base catalysis in the mechanism of Escherichia coli uracil DNA glycosylase
-
Drohat, A. C., Jagadeesh, J., Ferguson, E. & Stivers, J. T. The role of electrophilic and base catalysis in the mechanism of Escherichia coli uracil DNA glycosylase. Biochemistry 38, 11866-11875 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 11866-11875
-
-
Drohat, A.C.1
Jagadeesh, J.2
Ferguson, E.3
Stivers, J.T.4
-
24
-
-
0033554395
-
Hetronuclear NMR and crystallographic studies of wild-type and H187Q Escherichia coli uracil DNA glycosylase: Electrophilic catalysis of uracil expulsion by a neutral histidine 187
-
Drohat, A. C. et al. Hetronuclear NMR and crystallographic studies of wild-type and H187Q Escherichia coli uracil DNA glycosylase: Electrophilic catalysis of uracil expulsion by a neutral histidine 187. Biochemistry 38, 11876-11886 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 11876-11886
-
-
Drohat, A.C.1
-
25
-
-
0033120232
-
Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: Structure and glycosylase mechanism revisited
-
Xiao, G. et al. Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited. Proteins 35, 13-24 (1999).
-
(1999)
Proteins
, vol.35
, pp. 13-24
-
-
Xiao, G.1
-
26
-
-
0028933306
-
Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase
-
Slupphaug, G. et al. Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase. Biochemistry 34, 128-138 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 128-138
-
-
Slupphaug, G.1
-
27
-
-
0031059866
-
Processing of X-ray diffraction data in oscillation mode
-
Otwinoski, Z. & Minor, W. Processing of X-ray diffraction data in oscillation mode. Methods Enzymol. 276, 307-325 (1997).
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-325
-
-
Otwinoski, Z.1
Minor, W.2
-
28
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
McCoy, A. J., Grosse-Kunstleve, R. W., Storoni, L. C. & Read, R. J. Likelihood-enhanced fast translation functions. Acta Crystallogr. D 61, 458-464 (2005).
-
(2005)
Acta Crystallogr. D
, vol.61
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
29
-
-
0028103275
-
Number 4. The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project
-
Collaborative Computational Project, Number 4. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D 50, 760-776 (1994).
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-776
-
-
-
30
-
-
0033119938
-
-
Esnouf, R. M. Further additions to Molscript version 1.4, including reading and contouring of electron density maps. Acta Crystallogr. D 55, 938-940 1999
-
Esnouf, R. M. Further additions to Molscript version 1.4, including reading and contouring of electron density maps. Acta Crystallogr. D 55, 938-940 (1999).
-
-
-
|