-
1
-
-
0031730185
-
Iron center, substrate recognition and mechanism of peptide deformylase
-
Becker A., Schlichting I., Kabsch W., Groche D., Schultz S., Wagner A. F. V. Iron center, substrate recognition and mechanism of peptide deformylase. Nature Struct. Biol. 5:1998a;1053-1058.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 1053-1058
-
-
Becker, A.1
Schlichting, I.2
Kabsch, W.3
Groche, D.4
Schultz, S.5
Wagner, A.F.V.6
-
2
-
-
0032496227
-
Structure of peptide deformylase and identification of the substrate binding site
-
Becker A., Schlichting I., Kabsch W., Schultz S., Wagner A. F. V. Structure of peptide deformylase and identification of the substrate binding site. J. Biol. Chem. 273:1998b;11413-11416.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 11413-11416
-
-
Becker, A.1
Schlichting, I.2
Kabsch, W.3
Schultz, S.4
Wagner, A.F.V.5
-
3
-
-
0030694781
-
Crystal structure of Escherichia coli peptide deformylase
-
Chan M. K., Gong W., Rajagopalan P. T. R., Tsai C. M., Pei D. Crystal structure of Escherichia coli peptide deformylase. Biochemistry. 36:1997;13904-13909.
-
(1997)
Biochemistry
, vol.36
, pp. 13904-13909
-
-
Chan, M.K.1
Gong, W.2
Rajagopalan, P.T.R.3
Tsai, C.M.4
Pei, D.5
-
4
-
-
0028242962
-
MC-Fit: Using Monte-Carlo methods to get accurate confidence limits on enzyme parameters
-
Dardel F. MC-Fit: using Monte-Carlo methods to get accurate confidence limits on enzyme parameters. Comput. Appl. Biosci. 10:1994;273-275.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 273-275
-
-
Dardel, F.1
-
5
-
-
0032540851
-
Solution structure of nickel- peptide deformylase
-
Dardel F., Ragusa S., Lazennec C., Blanquet S., Meinnel T. Solution structure of nickel- peptide deformylase. J. Mol. Biol. 280:1998;501-513.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 501-513
-
-
Dardel, F.1
Ragusa, S.2
Lazennec, C.3
Blanquet, S.4
Meinnel, T.5
-
6
-
-
0028382242
-
The NMR structure of the inhibited catalytic domain of human stromelysin-1
-
Gooley P. R., O'Connel J. F., Marcy A. I., Cuca G. C., Salowe S. P., Bush B. L., Hermes J. D., Esser C. K., Hagmann W. K., Springer J. P., Johnson B. A. The NMR structure of the inhibited catalytic domain of human stromelysin-1. Nature Struct. Biol. 1:1994;111-118.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 111-118
-
-
Gooley, P.R.1
O'Connel, J.F.2
Marcy, A.I.3
Cuca, G.C.4
Salowe, S.P.5
Bush, B.L.6
Hermes, J.D.7
Esser, C.K.8
Hagmann, W.K.9
Springer, J.P.10
Johnson, B.A.11
-
7
-
-
0028915695
-
X-ray structures of human collagenase complexed with peptide hydroxamate and peptide thiol inhibitors. Implications for substrate binding and rational drug design
-
Grams F., Reinemer P., Powers J. C., Kleine T., Pieper M., Tschesche H., Huber R., Bode W. X-ray structures of human collagenase complexed with peptide hydroxamate and peptide thiol inhibitors. Implications for substrate binding and rational drug design. Eur. J. Biochem. 228:1995;830-841.
-
(1995)
Eur. J. Biochem.
, vol.228
, pp. 830-841
-
-
Grams, F.1
Reinemer, P.2
Powers, J.C.3
Kleine, T.4
Pieper, M.5
Tschesche, H.6
Huber, R.7
Bode, W.8
-
8
-
-
0029762150
-
Structure of astacin with a transition-state analogue inhibitor
-
Grams F., Dive V., Yiotakis A., Yiallouros A., Vassiliou S., Zwilling R., Bode W., Stöker W. Structure of astacin with a transition-state analogue inhibitor. Nature Struct. Biol. 3:1996;671-675.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 671-675
-
-
Grams, F.1
Dive, V.2
Yiotakis, A.3
Yiallouros, A.4
Vassiliou, S.5
Zwilling, R.6
Bode, W.7
Stöker, W.8
-
9
-
-
0024340114
-
New method for generating deletions and gene replacements in Escherichia coli
-
Hamilton C. M., Aldea M., Washburn B. K., Babitzke P., Kushner S. R. New method for generating deletions and gene replacements in Escherichia coli. J. Bacteriol. 171:1989;4617-4622.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 4617-4622
-
-
Hamilton, C.M.1
Aldea, M.2
Washburn, B.K.3
Babitzke, P.4
Kushner, S.R.5
-
10
-
-
0033547751
-
Determination of substrate specificity for peptide deformylase through the screening of a combinatorial peptide library
-
Huy Y. J., Wei Y., Zhou Y., Rajagopalan P. T. R., Pei D. Determination of substrate specificity for peptide deformylase through the screening of a combinatorial peptide library. Biochemistry. 38:1999;643-650.
-
(1999)
Biochemistry
, vol.38
, pp. 643-650
-
-
Huy, Y.J.1
Wei, Y.2
Zhou, Y.3
Rajagopalan, P.T.R.4
Pei, D.5
-
11
-
-
0029155961
-
Development of highly potent and selective phosphinic peptide inhibitors of zinc endopeptidase 24-15 using combinatorial chemistry
-
Jiracek J., Yiotakis A., Vincent B., Lecoq A., Nicolaou A., Checler F., Dive V. Development of highly potent and selective phosphinic peptide inhibitors of zinc endopeptidase 24-15 using combinatorial chemistry. J. Biol. Chem. 270:1995;21701-21706.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 21701-21706
-
-
Jiracek, J.1
Yiotakis, A.2
Vincent, B.3
Lecoq, A.4
Nicolaou, A.5
Checler, F.6
Dive, V.7
-
12
-
-
0029741201
-
Development of the first potent selective inhibitor of the zinc endopeptidase neurolysin using a systematic approach based on combinatorial chemistry of phosphinic peptides
-
Jiracek J., Yiotakis A., Vincent b., Checler F., Dive V. Development of the first potent selective inhibitor of the zinc endopeptidase neurolysin using a systematic approach based on combinatorial chemistry of phosphinic peptides. J. Biol. Chem. 271:1996;19606-19611.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 19606-19611
-
-
Jiracek, J.1
Yiotakis, A.2
Vincent, B.3
Checler, F.4
Dive, V.5
-
13
-
-
0014904642
-
Studies on the ability of norleucine to replace methionine in the initiation of protein synthesis in E. coli
-
Kerwar S. S., Weissbach H. Studies on the ability of norleucine to replace methionine in the initiation of protein synthesis in E. coli. Arch. Biochem. Biophys. 141:1970;525-532.
-
(1970)
Arch. Biochem. Biophys.
, vol.141
, pp. 525-532
-
-
Kerwar, S.S.1
Weissbach, H.2
-
14
-
-
0031025121
-
Formate dehydrogenase-coupled spectrophotometric assay of peptide deformylase
-
Lazennec C., Meinnel T. Formate dehydrogenase-coupled spectrophotometric assay of peptide deformylase. Anal. Biochem. 244:1997;180-182.
-
(1997)
Anal. Biochem.
, vol.244
, pp. 180-182
-
-
Lazennec, C.1
Meinnel, T.2
-
15
-
-
33845280830
-
Structural basis of the action of thermolysin and related zinc peptidases
-
Matthews B. W. Structural basis of the action of thermolysin and related zinc peptidases. Acc. Chem. Res. 21:1988;333-340.
-
(1988)
Acc. Chem. Res.
, vol.21
, pp. 333-340
-
-
Matthews, B.W.1
-
16
-
-
0028053015
-
Genetic characterization of polypeptide deformylase, a distinctive enzyme of eubacterial translation
-
Mazel D., Pochet S., Marlière P. Genetic characterization of polypeptide deformylase, a distinctive enzyme of eubacterial translation. EMBO J. 13:1994;914-923.
-
(1994)
EMBO J.
, vol.13
, pp. 914-923
-
-
Mazel, D.1
Pochet, S.2
Marlière, P.3
-
17
-
-
0344983194
-
Toward a rational design for new antibacterial agents
-
Meinnel T. Toward a rational design for new antibacterial agents. Pathol. Biol. 1999.
-
(1999)
Pathol. Biol.
-
-
Meinnel, T.1
-
18
-
-
0027369819
-
fformyltransferase are encoded within the same operon in Escherichia coli
-
fformyltransferase are encoded within the same operon in Escherichia coli. J. Bacteriol. 175:1993;7737-7740.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 7737-7740
-
-
Meinnel, T.1
Blanquet, S.2
-
20
-
-
0028916186
-
Enzymatic properties of Escherichia coli peptide deformylase
-
Meinnel T., Blanquet S. Enzymatic properties of Escherichia coli peptide deformylase. J. Bacteriol. 177:1995;1883-1887.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1883-1887
-
-
Meinnel, T.1
Blanquet, S.2
-
21
-
-
0027882514
-
Methionine as translation start signal: A review of the enzymes of the pathway in Escherichia coli
-
Meinnel T., Mechulam Y., Blanquet S. Methionine as translation start signal: a review of the enzymes of the pathway in Escherichia coli. Biochimie (Paris). 75:1993;1061-1075.
-
(1993)
Biochimie (Paris)
, vol.75
, pp. 1061-1075
-
-
Meinnel, T.1
Mechulam, Y.2
Blanquet, S.3
-
22
-
-
0028790271
-
Mapping of the active site zinc ligands of peptide deformylase
-
Meinnel T., Lazennec C., Blanquet S. Mapping of the active site zinc ligands of peptide deformylase. J. Mol. Biol. 254:1995;175-183.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 175-183
-
-
Meinnel, T.1
Lazennec, C.2
Blanquet, S.3
-
23
-
-
0030603915
-
A new subclass of the zinc metalloproteases family revealed by the solution structure of peptide deformylase
-
Meinnel T., Blanquet S., Dardel F. A new subclass of the zinc metalloproteases family revealed by the solution structure of peptide deformylase. J. Mol. Biol. 262:1996a;375-386.
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 375-386
-
-
Meinnel, T.1
Blanquet, S.2
Dardel, F.3
-
24
-
-
0030004178
-
The C-terminal domain of peptide deformylase is disordered and dispensable for activity
-
Meinnel T., Lazennec C., Dardel F., Schmitter J.-M., Blanquet S. The C-terminal domain of peptide deformylase is disordered and dispensable for activity. FEBS Letters. 385:1996b;91-95.
-
(1996)
FEBS Letters
, vol.385
, pp. 91-95
-
-
Meinnel, T.1
Lazennec, C.2
Dardel, F.3
Schmitter, J.-M.4
Blanquet, S.5
-
25
-
-
0031552348
-
Structure-function relationships of the peptide deformylase family. Evidence for a common tertiary fold of the active site built around three conserved motifs and a metal ion
-
Meinnel T., Lazennec C., Villoing S., Blanquet S. Structure-function relationships of the peptide deformylase family. Evidence for a common tertiary fold of the active site built around three conserved motifs and a metal ion. J. Mol. Biol. 267:1997;749-761.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 749-761
-
-
Meinnel, T.1
Lazennec, C.2
Villoing, S.3
Blanquet, S.4
-
26
-
-
0033528708
-
Design and synthesis of substrate analogue inhibitors of peptide deformylase
-
Meinnel T., Patiny L., Ragusa S., Blanquet S. Design and synthesis of substrate analogue inhibitors of peptide deformylase. Biochemistry. 38:1999;4287-4295.
-
(1999)
Biochemistry
, vol.38
, pp. 4287-4295
-
-
Meinnel, T.1
Patiny, L.2
Ragusa, S.3
Blanquet, S.4
-
27
-
-
0018884041
-
An E. coli gene product required for λ site-specific recombination
-
Miller H. I., Friedman D. I. An E. coli gene product required for λ site-specific recombination. Cell. 20:1980;711-719.
-
(1980)
Cell
, vol.20
, pp. 711-719
-
-
Miller, H.I.1
Friedman, D.I.2
-
28
-
-
0020476130
-
Structure of a mercaptan-thermolysin complex illustrates mode of inhibition of proteases by substrate-analogue mercaptans
-
Monzingo A. F., Matthews B. W. Structure of a mercaptan-thermolysin complex illustrates mode of inhibition of proteases by substrate-analogue mercaptans. Biochemistry. 21:1982;3390-3394.
-
(1982)
Biochemistry
, vol.21
, pp. 3390-3394
-
-
Monzingo, A.F.1
Matthews, B.W.2
-
29
-
-
0014828815
-
Thermolysin: Kinetic study with oligopeptides
-
Morihara K., Tsuzuki H. Thermolysin: kinetic study with oligopeptides. Eur. J. Biochem. 15:1970;374-380.
-
(1970)
Eur. J. Biochem.
, vol.15
, pp. 374-380
-
-
Morihara, K.1
Tsuzuki, H.2
-
30
-
-
0014410525
-
Comparison of the specificities of various neutral proteinases from microorganisms
-
Morihara K., Tsuzuki H., Oka T. Comparison of the specificities of various neutral proteinases from microorganisms. Arch. Biochem. Biophys. 123:1968;572-588.
-
(1968)
Arch. Biochem. Biophys.
, vol.123
, pp. 572-588
-
-
Morihara, K.1
Tsuzuki, H.2
Oka, T.3
-
31
-
-
0032579501
-
Membrane type-1 metalloprotease and stromelysin-3 clease more efficiently synthetic substrates containing unusual amino acids in their P1′ position
-
Mucha A., Cuniasse P., Kannan R., Beau F., Yiotakis A., Basset P., Dive V. Membrane type-1 metalloprotease and stromelysin-3 clease more efficiently synthetic substrates containing unusual amino acids in their P1′ position. J. Biol. Chem. 273:1998;2763-2768.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 2763-2768
-
-
Mucha, A.1
Cuniasse, P.2
Kannan, R.3
Beau, F.4
Yiotakis, A.5
Basset, P.6
Dive, V.7
-
33
-
-
0032540979
-
Control of peptide deformylase activity by metal cations
-
Ragusa S., Blanquet S., Meinnel T. Control of peptide deformylase activity by metal cations. J. Mol. Biol. 280:1998;515-523.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 515-523
-
-
Ragusa, S.1
Blanquet, S.2
Meinnel, T.3
-
34
-
-
0000296163
-
Peptide deformylase: A new type of mononuclear iron protein
-
Rajagopalan P. T. R., Yu X. C., Pei D. Peptide deformylase: a new type of mononuclear iron protein. J. Am. Chem. Soc. 119:1997;12418-12419.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 12418-12419
-
-
Rajagopalan, P.T.R.1
Yu, X.C.2
Pei, D.3
-
35
-
-
0029036451
-
Evolutionary families of metallopeptidases
-
Rawlings N. D., Barrett A. J. Evolutionary families of metallopeptidases. Methods Enzymol. 248:1995;183-228.
-
(1995)
Methods Enzymol.
, vol.248
, pp. 183-228
-
-
Rawlings, N.D.1
Barrett, A.J.2
-
36
-
-
0024580983
-
Thiorphan and tetro -thiorphan display equivalent interactions when bound to crystalline thermolysin
-
Roderick S. L., Fournie-Zaluski M. C., Roques B. P., Matthews B. W. Thiorphan and tetro -thiorphan display equivalent interactions when bound to crystalline thermolysin. Biochemistry. 28:1989;1493-1497.
-
(1989)
Biochemistry
, vol.28
, pp. 1493-1497
-
-
Roderick, S.L.1
Fournie-Zaluski, M.C.2
Roques, B.P.3
Matthews, B.W.4
-
37
-
-
0025303335
-
Zinc coordination, function, and structure of zinc enzymes and other proteins
-
Vallee B. L., Auld D. S. Zinc coordination, function, and structure of zinc enzymes and other proteins. Biochemistry. 29:1990;5647-5659.
-
(1990)
Biochemistry
, vol.29
, pp. 5647-5659
-
-
Vallee, B.L.1
Auld, D.S.2
-
38
-
-
0029666453
-
Understanding the P1′ specificity of the matrix metalloproteinases: Effect of S1′ pocket mutations in matrylisin and stromelysin-1
-
Welch A. R., Holman C. M., Huber M., Brenner M. C., Browner M. F., Van Wart H. E. Understanding the P1′ specificity of the matrix metalloproteinases: effect of S1′ pocket mutations in matrylisin and stromelysin-1. Biochemistry. 35:1996;10103-10109.
-
(1996)
Biochemistry
, vol.35
, pp. 10103-10109
-
-
Welch, A.R.1
Holman, C.M.2
Huber, M.3
Brenner, M.C.4
Browner, M.F.5
Van Wart, H.E.6
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