-
1
-
-
0015387855
-
Blood and hemoglobin: The evolution of knowledge of functional adaption in a biochemical system
-
Edsall JT. Blood and hemoglobin: the evolution of knowledge of functional adaption in a biochemical system. J History Biol 1972;5:205-257.
-
(1972)
J. History Biol.
, vol.5
, pp. 205-257
-
-
Edsall, J.T.1
-
2
-
-
84970582209
-
Synthese des haematoporphyrins, protoporphyrins und haemins
-
Fischer H, Zeile K. Synthese des haematoporphyrins, protoporphyrins und haemins. Liebigs Ann Chem 1929;468:98-116.
-
(1929)
Liebigs Ann. Chem.
, vol.468
, pp. 98-116
-
-
Fischer, H.1
Zeile, K.2
-
3
-
-
0001266102
-
3-Dimensional model of the myoglobin molecule obtained by X-ray analysis
-
Kendrew JC, Bodo G, Dintzis HM, Parrish RG, Wyckoff H, Phillips DC. 3-Dimensional model of the myoglobin molecule obtained by X-ray analysis. Nature 1958;181:662-666.
-
(1958)
Nature
, vol.181
, pp. 662-666
-
-
Kendrew, J.C.1
Bodo, G.2
Dintzis, H.M.3
Parrish, R.G.4
Wyckoff, H.5
Phillips, D.C.6
-
4
-
-
36949066642
-
Structure of haemoglobin-3-dimensional Fourier synthesis at 5.5-Å resolution, obtained by X-ray analysis
-
Perutz MF, Rossmann MG, Cullis AF, Muirhead H, Will G, North ACT. Structure of haemoglobin-3-dimensional Fourier synthesis at 5.5-Å resolution, obtained by X-ray analysis. Nature 1960;185:416-422.
-
(1960)
Nature
, vol.185
, pp. 416-422
-
-
Perutz, M.F.1
Rossmann, M.G.2
Cullis, A.F.3
Muirhead, H.4
Will, G.5
North, A.C.T.6
-
6
-
-
1542274547
-
Heme protein assemblies
-
Reedy CJ, Gibney BR. Heme protein assemblies. Chem Rev 2004;104:617-649.
-
(2004)
Chem. Rev.
, vol.104
, pp. 617-649
-
-
Reedy, C.J.1
Gibney, B.R.2
-
7
-
-
1842778899
-
A distinctive electrocatalytic response from the cytochrome c peroxidase of Nitrosomonas europaea
-
Bradley AL, Chobot SE, Arciero DM, Hooper AB, Elliott SJ. A distinctive electrocatalytic response from the cytochrome c peroxidase of Nitrosomonas europaea. J Biol Chem 2004;279:13297-13300.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 13297-13300
-
-
Bradley, A.L.1
Chobot, S.E.2
Arciero, D.M.3
Hooper, A.B.4
Elliott, S.J.5
-
11
-
-
41949091618
-
Deciphering the structural role of histidine 83 for heme binding in hemophore HasA
-
Caillet-Saguy C, Turano P, Piccioli M, Lukat-Rodgers GS, Czjzek M, Guigliarelli B, Izadi-Pruneyre N, Rodgers KR, Delepierre M, Lecroisey A. Deciphering the structural role of histidine 83 for heme binding in hemophore HasA. J Biol Chem 2008;283:5960-5970.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 5960-5970
-
-
Caillet-Saguy, C.1
Turano, P.2
Piccioli, M.3
Lukat-Rodgers, G.S.4
Czjzek, M.5
Guigliarelli, B.6
Izadi-Pruneyre, N.7
Rodgers, K.R.8
Delepierre, M.9
Lecroisey, A.10
-
12
-
-
65349191154
-
Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO. histamine, and imidazole complexes
-
Berry RE, Shokhirev MN, Ho A Y W, Yang F, Shokhireva TK, Zhang HJ, Weichsel A, Montfort WR, Walker FA. Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO. histamine, and imidazole complexes. J Am Chem Soc 2009;131:2313-2327.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 2313-2327
-
-
Berry, R.E.1
Shokhirev, M.N.2
Ho, A.Y.W.3
Yang, F.4
Shokhireva, T.K.5
Zhang, H.J.6
Weichsel, A.7
Montfort, W.R.8
Walker, F.A.9
-
13
-
-
59049102145
-
Heme uptake across the outer membrane as revealed by crystal structures of the receptorhemophore complex
-
Krieg S, Huché F, Diederichs K, Izadi-Pruneyre N, Lecroisey A, Wandersman C, Delepelaire P, Welte W. Heme uptake across the outer membrane as revealed by crystal structures of the receptorhemophore complex Proc Natl Acad Sci USA 2009;106:1045-1050.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 1045-1050
-
-
Krieg, S.1
Huché, F.2
Diederichs, K.3
Izadi-Pruneyre, N.4
Lecroisey, A.5
Wandersman, C.6
Delepelaire, P.7
Welte, W.8
-
14
-
-
35449002141
-
De novo design and synthesis of heme proteins
-
Gibney BR, Dutton PL. De novo design and synthesis of heme proteins. Adv Inorg Chem 2001;51:409-455.
-
(2001)
Adv. Inorg. Chem.
, vol.51
, pp. 409-455
-
-
Gibney, B.R.1
Dutton, P.L.2
-
15
-
-
34447636614
-
Detection of heme oxygenase activity in a library of four-helix bundle proteins: Towards the de novo synthesis of functional heme proteins
-
Monien BH, Drepper F, Sommerhalter M, Lubitz W, Haehnel W. Detection of heme oxygenase activity in a library of four-helix bundle proteins: Towards the de novo synthesis of functional heme proteins. J Mol Biol 2007;371:739-753.
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 739-753
-
-
Monien, B.H.1
Drepper, F.2
Sommerhalter, M.3
Lubitz, W.4
Haehnel, W.5
-
16
-
-
33846436807
-
Design of a functional membrane protein by engineering a heme-binding site in glycophorin A
-
Cordova JM, Noack PL, Hilcove SA, Lear JD, Ghirlanda G. Design of a functional membrane protein by engineering a heme-binding site in glycophorin A. J Am Chem Soc 2007;129:512-518.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 512-518
-
-
Cordova, J.M.1
Noack, P.L.2
Hilcove, S.A.3
Lear, J.D.4
Ghirlanda, G.5
-
17
-
-
69249128736
-
Design of a novel heme protein with a nonheme globin scaffold
-
Isogai Y, Ishida M. Design of a novel heme protein with a nonheme globin scaffold. Biochemistry 2009;48:8136-8142.
-
(2009)
Biochemistry
, vol.48
, pp. 8136-8142
-
-
Isogai, Y.1
Ishida, M.2
-
19
-
-
72949111166
-
Rational design of a structural and functional nitric oxide reductase
-
Yeung N, Lin YW, Gao YG, Zhao X, Russell BS, Lei LY, Miner KD, Robinson H, Lu Y. Rational design of a structural and functional nitric oxide reductase. Nature 2009;462:1079-1082.
-
(2009)
Nature
, vol.462
, pp. 1079-1082
-
-
Yeung, N.1
Lin, Y.W.2
Gao, Y.G.3
Zhao, X.4
Russell, B.S.5
Lei, L.Y.6
Miner, K.D.7
Robinson, H.8
Lu, Y.9
-
21
-
-
0028281579
-
Design and synthesis of multi-heme proteins
-
Robertson DE, Farid RS, Moser CC, Urbauer JL, Mulholland SE, Pidikiti R, Lear JD, Wand AJ, DeGrado WF, Dutton PL. Design and synthesis of multi-heme proteins. Nature 1994;368:425-432.
-
(1994)
Nature
, vol.368
, pp. 425-432
-
-
Robertson, D.E.1
Farid, R.S.2
Moser, C.C.3
Urbauer, J.L.4
Mulholland, S.E.5
Pidikiti, R.6
Lear, J.D.7
Wand, A.J.8
DeGrado, W.F.9
Dutton, P.L.10
-
22
-
-
3042736063
-
1
-
1. J Am Chem Soc 2004;126:8141-8147.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8141-8147
-
-
Ghirlanda, G.1
Osyczka, A.2
Liu, W.X.3
Antolovich, M.4
Smith, K.M.5
Dutton, P.L.6
Wand, A.J.7
DeGrado, W.F.8
-
23
-
-
1842631425
-
The HP-1 maquette: From an apoprotein structure to a structured hemoprotein designed to promote redox-coupled proton exchange
-
Huang SS, Koder RL, Lewis M, Wand AJ, Dutton PL. The HP-1 maquette: from an apoprotein structure to a structured hemoprotein designed to promote redox-coupled proton exchange. Proc Natl Acad Sci USA 2004;101:5536-5541.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 5536-5541
-
-
Huang, S.S.1
Koder, R.L.2
Lewis, M.3
Wand, A.J.4
Dutton, P.L.5
-
24
-
-
33745185322
-
Intelligent design: The de novo engineering of proteins with specified functions
-
Koder RL, Dutton PL. Intelligent design: the de novo engineering of proteins with specified functions. Dalton Trans 2006;25:3045-3051.
-
(2006)
Dalton Trans.
, vol.25
, pp. 3045-3051
-
-
Koder, R.L.1
Dutton, P.L.2
-
25
-
-
60849101876
-
Hemoproteins in design of biofuel cells
-
Ramanavicius A, Ramanaviciene A. Hemoproteins in design of biofuel cells. Fuel Cells 2009;9:25-36.
-
(2009)
Fuel Cells
, vol.9
, pp. 25-36
-
-
Ramanavicius, A.1
Ramanaviciene, A.2
-
26
-
-
30344435912
-
Amphiphilic 4-helix bundles designed for biomolecular materials applications
-
Ye SX, Strzalka JW, Discher BM, Noy D, Zheng SY, Dutton PL, Blasie JK. Amphiphilic 4-helix bundles designed for biomolecular materials applications. Langmuir 2006;22:512-512.
-
(2006)
Langmuir
, vol.22
, pp. 512-512
-
-
Ye, S.X.1
Strzalka, J.W.2
Discher, B.M.3
Noy, D.4
Zheng, S.Y.5
Dutton, P.L.6
Blasie, J.K.7
-
27
-
-
33745502207
-
Design of metal cofactors activated by a protein-protein electron transfer system
-
Ueno T, Yokoi N, Unno M, Matsui T, Tokita Y, Yamada M, Ikeda-Saito M, Nakajima H, Watanabe Y. Design of metal cofactors activated by a protein-protein electron transfer system. Proc Natl Acad Sci USA 2006;103:9416-9421.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9416-9421
-
-
Ueno, T.1
Yokoi, N.2
Unno, M.3
Matsui, T.4
Tokita, Y.5
Yamada, M.6
Ikeda-Saito, M.7
Nakajima, H.8
Watanabe, Y.9
-
28
-
-
33847718675
-
Three-dimensional structure and dynamics of a de novo designed, amphiphilic, metallo-porphyrin-binding protein maquette at soft interfaces by molecular dynamics simulations
-
Zou HL, Strzalka J, Xu T, Tronin A, Blasie JK. Three-dimensional structure and dynamics of a de novo designed, amphiphilic, metallo-porphyrin- binding protein maquette at soft interfaces by molecular dynamics simulations. J Phys Chem B 2007;111:1823-1833.
-
(2007)
J. Phys. Chem. B.
, vol.111
, pp. 1823-1833
-
-
Zou, H.L.1
Strzalka, J.2
Xu, T.3
Tronin, A.4
Blasie, J.K.5
-
29
-
-
39049157863
-
Computational design of four-helix bundle proteins that bind nonbiological cofactors
-
Lehmann A, Saven JG. Computational design of four-helix bundle proteins that bind nonbiological cofactors. Biotechnol Progr 2008;24:74-79.
-
(2008)
Biotechnol. Progr.
, vol.24
, pp. 74-79
-
-
Lehmann, A.1
Saven, J.G.2
-
30
-
-
27744493432
-
Multi-heme cytochromes-new structures, new chemistry
-
Mowat CG, Chapman SK. Multi-heme cytochromes-new structures, new chemistry. Dalton Trans 2005;21:3381-3389.
-
(2005)
Dalton Trans.
, vol.21
, pp. 3381-3389
-
-
Mowat, C.G.1
Chapman, S.K.2
-
32
-
-
34249805095
-
Diversity and conservation of interactions for binding heme in b-type heme proteins
-
Schneider S, Marles-Wright J, Sharp KH, Paoli M. Diversity and conservation of interactions for binding heme in b-type heme proteins. Nat Prod Reports 2007;24:621-630.
-
(2007)
Nat. Prod. Reports
, vol.24
, pp. 621-630
-
-
Schneider, S.1
Marles-Wright, J.2
Sharp, K.H.3
Paoli, M.4
-
33
-
-
38549169460
-
Development of a heme protein structureelectrochemical function database
-
Reedy CJ, Elvekrog MM, Gibney BR. Development of a heme protein structureelectrochemical function database. Nucl Acids Res 2008;36: D307-D313.
-
(2008)
Nucl. Acids Res.
, vol.36
-
-
Reedy, C.J.1
Elvekrog, M.M.2
Gibney, B.R.3
-
34
-
-
56649116373
-
Ligand preference and orientation in b-and c-type heme-binding proteins
-
Fufezan C, Zhang J, Gunner MR. Ligand preference and orientation in b-and c-type heme-binding proteins. Proteins: Struc Func Bioinf 2008;73:690-704.
-
(2008)
Proteins: Struc Func. Bioinf
, vol.73
, pp. 690-704
-
-
Fufezan, C.1
Zhang, J.2
Gunner, M.R.3
-
35
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The protein data bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
36
-
-
0030777303
-
CATH: A hierarchic classification of protein domain structures
-
Orengo CA, Michie AD, Jones DT, Swindells MB, Thornton JM. CATH: a hierarchic classification of protein domain structures. Structure 1997;5:1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, D.T.3
Swindells, M.B.4
Thornton, J.M.5
-
37
-
-
58149187899
-
The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies
-
Cuff AL, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton JM, Orengo CA. The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res 2009;37: D310-D314.
-
(2009)
Nucleic. Acids Res.
, vol.37
-
-
Cuff, A.L.1
Sillitoe, I.2
Lewis, T.3
Redfern, O.C.4
Garratt, R.5
Thornton, J.M.6
Orengo, C.A.7
-
38
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
39
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard T J P, Chothia C, Murzin AG. Data growth and its impact on the SCOP database: new developments. Nucl Acid Res 2008;36: D419-D425.
-
(2008)
Nucl. Acid Res.
, vol.36
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.M.3
Brenner, S.E.4
Hubbard, T.J.P.5
Chothia, C.6
Murzin, A.G.7
-
40
-
-
0003742069
-
-
Department of Biochemistry and Molecular Biology, University College London
-
Hubbard SJ, Thornton JM. 'NACCESS', computer program, Department of Biochemistry and Molecular Biology, University College London; 1993.
-
(1993)
'NACCESS', Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
41
-
-
0015222647
-
Interpretation of protein structures-estimation of static accessibility
-
Lee B, Richards FM. Interpretation of protein structures-estimation of static accessibility. J Mol Biol 1971;55:379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
42
-
-
0028304962
-
Satisfying hydrogen-bonding potential in proteins
-
McDonald IK, Thornton JM. Satisfying hydrogen-bonding potential in proteins. J Mol Biol 1994;238:777-793.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
-
43
-
-
76549252207
-
The structure of proteins: Two hydrogen-bonded helical configurations of the polypeptide chain
-
Pauling L, Corey RB, Branson HR. The structure of proteins: two hydrogen-bonded helical configurations of the polypeptide chain. Proc Nat Acad Sci USA 1951;37:205-211.
-
(1951)
Proc. Nat. Acad. Sci. USA
, vol.37
, pp. 205-211
-
-
Pauling, L.1
Corey, R.B.2
Branson, H.R.3
-
44
-
-
5944250450
-
Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occuring amino acids
-
Momany FA, McGuire RF, Burgess AW, Scheraga HA. Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occuring amino acids. J Phys Chem 1975;79:2373-2381.
-
(1975)
J. Phys. Chem.
, vol.79
, pp. 2373-2381
-
-
Momany, F.A.1
McGuire, R.F.2
Burgess, A.W.3
Scheraga, H.A.4
-
45
-
-
0028922586
-
LIGPLOT-a program to generate schematic diagrams of protein ligand interactions
-
Wallace AC, Laskowski RA, Thornton JM. LIGPLOT-a program to generate schematic diagrams of protein ligand interactions. Protein Eng 1995;8:127-134.
-
(1995)
Protein Eng.
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
46
-
-
12944257228
-
The Con-Surf-HSSP database: The mapping of evolutionary conservation among homologs onto PDB structures
-
Glaser F, Rosenberg Y, Kessel A, Pupko T, Ben-Tal N. The Con-Surf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures. Proteins: Struct Func Bioinform 2005;58:610-617.
-
(2005)
Proteins: Struct. Func. Bioinform
, vol.58
, pp. 610-617
-
-
Glaser, F.1
Rosenberg, Y.2
Kessel, A.3
Pupko, T.4
Ben-Tal, N.5
-
47
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander C, Schneider R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins: Struct Funct Bioinform 1991;9:56-68.
-
(1991)
Proteins: Struct. Funct Bioinform
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
48
-
-
0002218484
-
Rate4Site: An algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues
-
Pupko T, Bell RE, Mayrose I, Glaser F, Ben Tal N. Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. Bioinformatics 2002;18: S71-S77.
-
(2002)
Bioinformatics
, vol.18
-
-
Pupko, T.1
Bell, R.E.2
Mayrose, I.3
Glaser, F.4
Tal, N.B.5
-
50
-
-
0028881975
-
SURFNET-a program for visualizing molecularsurfaces, cavities, and intermolecular interactions
-
Laskowski RA. SURFNET-a program for visualizing molecularsurfaces, cavities, and intermolecular interactions. J Mol Graph 1995;13:323-330.
-
(1995)
J. Mol. Graph
, vol.13
, pp. 323-330
-
-
Laskowski, R.A.1
-
51
-
-
19544389524
-
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons
-
Morris RJ, Najmanovich RJ, Kahraman A, Thornton JM. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics 2005;21:2347-2355.
-
(2005)
Bioinformatics
, vol.21
, pp. 2347-2355
-
-
Morris, R.J.1
Najmanovich, R.J.2
Kahraman, A.3
Thornton, J.M.4
-
52
-
-
84944178665
-
Hierarchical grouping to optimize an objective function
-
Ward JH, Jr. Hierarchical grouping to optimize an objective function. Am Stat Assoc 1963;58:236-244.
-
(1963)
Am. Stat. Assoc.
, vol.58
, pp. 236-244
-
-
Ward Jr., J.H.1
-
54
-
-
0029831680
-
An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies
-
Kelley LA, Gardner SP, Sutcliffe MJ. An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies. Protein Eng 1996;9:1063-1065.
-
(1996)
Protein Eng.
, vol.9
, pp. 1063-1065
-
-
Kelley, L.A.1
Gardner, S.P.2
Sutcliffe, M.J.3
-
55
-
-
0032825215
-
Crystal structure of hemopexin reveals a novel high-affinity heme site formed between two beta-propeller domains
-
Paoli M, Anderson BF, Baker HM, Morgan WT, Smith A, Baker EN. Crystal structure of hemopexin reveals a novel high-affinity heme site formed between two beta-propeller domains. Nature Struc Biol 1999;6:926-931.
-
(1999)
Nature Struc Biol.
, vol.6
, pp. 926-931
-
-
Paoli, M.1
Anderson, B.F.2
Baker, H.M.3
Morgan, W.T.4
Smith, A.5
Baker, E.N.6
-
56
-
-
1642441846
-
The crystal structures of the ferric and ferrous forms of the heme complex of HmuO, a heme oxygenase of Corynebacterium diphtheriae
-
Hirotsu S, Chu GC, Unno M, Lee DS, Yoshida T, Park SY, Shiro Y, Ikeda-Saito M. The crystal structures of the ferric and ferrous forms of the heme complex of HmuO, a heme oxygenase of Corynebacterium diphtheriae. J Biol Chem 2004;279:11937-11947.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 11937-11947
-
-
Hirotsu, S.1
Chu, G.C.2
Unno, M.3
Lee, D.S.4
Yoshida, T.5
Park, S.Y.6
Shiro, Y.7
Ikeda-Saito, M.8
-
57
-
-
0035949448
-
Ligand-induced heme ruffling and bent NO geometry in ultra-high- resolution structures of nitrophorin 4
-
Roberts SA, Weichsel A, Qiu Y, Shelnutt JA, Walker FA, Montfort WR. Ligand-induced heme ruffling and bent NO geometry in ultra-high-resolution structures of nitrophorin 4. Biochemsitry 2001;40:11327-11337.
-
(2001)
Biochemsitry
, vol.40
, pp. 11327-11337
-
-
Roberts, S.A.1
Weichsel, A.2
Qiu, Y.3
Shelnutt, J.A.4
Walker, F.A.5
Montfort, W.R.6
-
59
-
-
34249854235
-
Crystal structure of the heme-IsdC complex, the central conduit of the Isd iron/heme uptake system in Staphylococcus aureus
-
Sharp KH, Schneider S, Cockayne A, Paoli M. Crystal structure of the heme-IsdC complex, the central conduit of the Isd iron/heme uptake system in Staphylococcus aureus. J Biol Chem 2007;282:10625-10631.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 10625-10631
-
-
Sharp, K.H.1
Schneider, S.2
Cockayne, A.3
Paoli, M.4
-
60
-
-
27744524078
-
Why isn't 'standard' heme good enough for c-type and d (1)-type cytochromes?
-
Allen J W A, Barker PD, Daltrop O, Stevens JM, Tomlinson EJ, Sinha N, Sambongi Y, Ferguson SJ. Why isn't 'standard' heme good enough for c-type and d (1)-type cytochromes? Dalton Trans 2005;21:3410-3418.
-
(2005)
Dalton Trans.
, vol.21
, pp. 3410-3418
-
-
Allen, J.W.A.1
Barker, P.D.2
Daltrop, O.3
Stevens, J.M.4
Tomlinson, E.J.5
Sinha, N.6
Sambongi, Y.7
Ferguson, S.J.8
-
63
-
-
0030611275
-
The 2.8 Å structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium, Nitrosomonas europaea
-
Igarashi N, Moriyama H, Fujiwara T, Fukumori Y, Tanaka N. The 2.8 Å structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium, Nitrosomonas europaea. Nature Struc Biol 1997;4:276-284.
-
(1997)
Nature Struc Biol.
, vol.4
, pp. 276-284
-
-
Igarashi, N.1
Moriyama, H.2
Fujiwara, T.3
Fukumori, Y.4
Tanaka, N.5
-
64
-
-
18144447465
-
Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase
-
Yoshikawa S, Shinzawa-Itoh K, Nakashima R, Yaono R, Yamashita E, Inoue N, Yao M, Fei MJ, Libeu CP, Mizushima T, Yamaguchi H, Tomizaki T, Tsukihara T. Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase. Science 1998;280:1723-1729.
-
(1998)
Science
, vol.280
, pp. 1723-1729
-
-
Yoshikawa, S.1
Shinzawa-Itoh, K.2
Nakashima, R.3
Yaono, R.4
Yamashita, E.5
Inoue, N.6
Yao, M.7
Fei, M.J.8
Libeu, C.P.9
Mizushima, T.10
Yamaguchi, H.11
Tomizaki, T.12
Tsukihara, T.13
-
65
-
-
0028809514
-
Sulfite reductase structure at 1.6 Å-evolution and catalysis for reduction of inorganic anions
-
Crane BR, Siegel LM, Getzoff ED. Sulfite reductase structure at 1.6 Å-evolution and catalysis for reduction of inorganic anions. Science 1995;270:59-67.
-
(1995)
Science
, vol.270
, pp. 59-67
-
-
Crane, B.R.1
Siegel, L.M.2
Getzoff, E.D.3
-
66
-
-
0034697020
-
X-ray crystal structure and characterization of halide-binding sites of human myeloperoxidase at 1.8 Å resolution
-
Fiedler TJ, Davey CA, Fenna RE. X-ray crystal structure and characterization of halide-binding sites of human myeloperoxidase at 1.8 Å resolution. J Biol Chem 2000;275:11964-11971.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 11964-11971
-
-
Fiedler, T.J.1
Davey, C.A.2
Fenna, R.E.3
-
67
-
-
0033788953
-
The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site
-
Abramson J, Riistama S, Larsson G, Jasaitis A, Svensson-Ek M, Laakkonen L, Puustinen A, Iwata S, Wikstrom M. The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site. Nature Struc Biol 2000:7; 910-917.
-
(2000)
Nature Struc Biol.
, vol.7
, pp. 910-917
-
-
Abramson, J.1
Riistama, S.2
Larsson, G.3
Jasaitis, A.4
Svensson-Ek, M.5
Laakkonen, L.6
Puustinen, A.7
Iwata, S.8
Wikstrom, M.9
-
68
-
-
0029644727
-
-
Bravo J, Verdaguer N, Tormo J, Betzel C, Switala J, Loewen PC, Fita I. Crystal-structure of catalase HPII from Escherichia-coli structure 1995;3:491-502.
-
(1995)
Crystal-structure of Catalase HPII From Escherichia-coli Structure
, vol.3
, pp. 491-502
-
-
Bravo, J.1
Verdaguer, N.2
Tormo, J.3
Betzel, C.4
Switala, J.5
Loewen, P.C.6
Fita, I.7
-
69
-
-
0021783302
-
The structure of invertebrate extracellular hemoglobins (erythrocruorins and chlorocruorins)
-
Vinogradov SN. The structure of invertebrate extracellular hemoglobins (erythrocruorins and chlorocruorins). Comp Biochem Physiol 1985;82 B: 1-15.
-
(1985)
Comp. Biochem. Physiol.
, vol.82 B
, pp. 1-15
-
-
Vinogradov, S.N.1
-
70
-
-
0033784540
-
Structure of the CO sensing transcription activator CooA
-
Lanzilotta WN, Schuller DJ, Thorsteinsson MV, Kerby RL, Roberts GP, Poulos TL. Structure of the CO sensing transcription activator CooA. Nature Struc Biol 2000;7:876-880.
-
(2000)
Nature Struc Biol.
, vol.7
, pp. 876-880
-
-
Lanzilotta, W.N.1
Schuller, D.J.2
Thorsteinsson, M.V.3
Kerby, R.L.4
Roberts, G.P.5
Poulos, T.L.6
-
71
-
-
0018129356
-
Heme exposure as determinate of oxidation-reduction potential of heme proteins
-
Stellwagen E. Heme exposure as determinate of oxidation-reduction potential of heme proteins. Nature 1978;275:73-74.
-
(1978)
Nature
, vol.275
, pp. 73-74
-
-
Stellwagen, E.1
-
72
-
-
0033573140
-
Still a puzzle: Why is haem covalently attached in c-type cytochromes?
-
Barker PD, Ferguson SJ. Still a puzzle: why is haem covalently attached in c-type cytochromes? Structure 1999;7: R281-R290.
-
(1999)
Structure
, vol.7
-
-
Barker, P.D.1
Ferguson, S.J.2
-
73
-
-
0034650750
-
A new scaffold for binding haem in the cytochrome domain of the extracellular flavocytochrome cellobiose dehydrogenase
-
Hallberg BM, Bergfors T, Backbro K, Pettersson G, Henriksson G, Divne C. A new scaffold for binding haem in the cytochrome domain of the extracellular flavocytochrome cellobiose dehydrogenase. Structure 2000;8:79-88.
-
(2000)
Structure
, vol.8
, pp. 79-88
-
-
Hallberg, B.M.1
Bergfors, T.2
Backbro, K.3
Pettersson, G.4
Henriksson, G.5
Divne, C.6
-
74
-
-
0037470161
-
Solution H-1 NMR investigation of the active site molecular and electronic structures of substrate-bound, cyanide-inhibited HmuO, a bacterial heme oxygenase from Corynebacterium diphtheriae
-
Li YM, Syvitski RT, Chu GC, Ikeda-Saito M, La Mar. GN. Solution H-1 NMR investigation of the active site molecular and electronic structures of substrate-bound, cyanide-inhibited HmuO, a bacterial heme oxygenase from Corynebacterium diphtheriae. J Biol Chem 2003;278:6651-6663.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 6651-6663
-
-
Li, Y.M.1
Syvitski, R.T.2
Chu, G.C.3
Ikeda-Saito, M.4
La Mar, G.N.5
-
75
-
-
0029646104
-
The crystal structure of chloroperoxidase: A heme peroxidase-cytochrome P450 functional hybrid
-
Sundaramoorthy M, Terner J, Poulos TL. The crystal structure of chloroperoxidase: a heme peroxidase-cytochrome P450 functional hybrid. Structure 1995;3:1367-1377.
-
(1995)
Structure
, vol.3
, pp. 1367-1377
-
-
Sundaramoorthy, M.1
Terner, J.2
Poulos, T.L.3
-
76
-
-
0025146477
-
High-resolution refinement of yeast iso-1-cytochrome-c and comparisons with other eukaryotic cytochromesc
-
Louie GV, Brayer GD. High-resolution refinement of yeast iso-1-cytochrome-c and comparisons with other eukaryotic cytochromesc. J Mol Biol 1990;214:527-555.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 527-555
-
-
Louie, G.V.1
Brayer, G.D.2
-
77
-
-
0021723457
-
Crystal-structure of yeast cytochrome-c peroxidase refined at 1.7-Å resolution
-
Finzel BC, Poulos TL, Kraut J. Crystal-structure of yeast cytochrome-c peroxidase refined at 1.7-Å resolution. J Biol Chem 1984;259:3027-3036.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 3027-3036
-
-
Finzel, B.C.1
Poulos, T.L.2
Kraut, J.3
-
78
-
-
25644434241
-
Ultrahigh resolution structures of nitrophorin 4: Heme distortion in ferrous CO and NO complexes
-
Maes EM, Roberts SA, Weichsel A, Montfort WR. Ultrahigh resolution structures of nitrophorin 4: heme distortion in ferrous CO and NO complexes. Biochemistry 2005;44:12690-12699.
-
(2005)
Biochemistry
, vol.44
, pp. 12690-12699
-
-
Maes, E.M.1
Roberts, S.A.2
Weichsel, A.3
Montfort, W.R.4
-
79
-
-
0000363353
-
Nonplanar porphyrins and their biological relevance-ground and excited-state dynamics
-
Ravikanth M, Chandrashekar TK. Nonplanar porphyrins and their biological relevance-ground and excited-state dynamics. Coordination Chem 1995;82:105-118.
-
(1995)
Coordination Chem.
, vol.82
, pp. 105-118
-
-
Ravikanth, M.1
Chandrashekar, T.K.2
-
80
-
-
33845278875
-
Structural and theoretical-models of photosynthetic chromophores- implications for redox, light-absorption properties and vectorial electron flow
-
Barkigia KM, Chantranupong L, Smith KM, Fajer J. Structural and theoretical-models of photosynthetic chromophores-implications for redox, light-absorption properties and vectorial electron flow. J Am Chem Soc 1998;110:7566-7567.
-
(1998)
J. Am. Chem. Soc.
, vol.110
, pp. 7566-7567
-
-
Barkigia, K.M.1
Chantranupong, L.2
Smith, K.M.3
Fajer, J.4
-
81
-
-
0032351444
-
Nonplanar porphyrins and their significance in proteins
-
Shelnutt JA, Song XZ, Ma JG, Jia SL, Jentzen W, Medforth CJ. Nonplanar porphyrins and their significance in proteins. Chem Soc Rev 1998;27:31-41.
-
(1998)
Chem. Soc. Rev.
, vol.27
, pp. 31-41
-
-
Shelnutt, J.A.1
Song, X.Z.2
Ma, J.G.3
Jia, S.L.4
Jentzen, W.5
Medforth, C.J.6
-
82
-
-
58149173292
-
Probing the function of heme distortion in the H-NOX family
-
Olea C, Boon EM, Pellicena P, Kuriyan J, Marletta MA. Probing the function of heme distortion in the H-NOX family. Chem Biol 2008;3:703-710.
-
(2008)
Chem. Biol.
, vol.3
, pp. 703-710
-
-
Olea, C.1
Boon, E.M.2
Pellicena, P.3
Kuriyan, J.4
Marletta, M.A.5
-
83
-
-
0034635333
-
Active and inhibited human catalase structures: Ligand and NADPH binding and catalytic mechanism
-
Putnam CD, Arvai AS, Bourne Y, Tainer JA. Active and inhibited human catalase structures: ligand and NADPH binding and catalytic mechanism. J Mol Biol 2000;296:295-309.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 295-309
-
-
Putnam, C.D.1
Arvai, A.S.2
Bourne, Y.3
Tainer, J.A.4
-
85
-
-
77951245620
-
On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins
-
Kahraman A Morris RJ, Laskowski RA, Favia AD, Thornton JM. On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins. Proteins: Struc, Funct, Bioinf 2010;78:1120-1136.
-
(2010)
Proteins: Struc, Funct, Bioinf
, vol.78
, pp. 1120-1136
-
-
Kahraman, A.1
Morris, R.J.2
Laskowski, R.A.3
Favia, A.D.4
Thornton, J.M.5
-
86
-
-
0025878347
-
π-π-interactions-the geometry and energetics of phenylalanine-phenylalanine interactions in proteins
-
Hunter CA, Singh J, Thornton JM. π-π-interactions-the geometry and energetics of phenylalanine-phenylalanine interactions in proteins. J Mol Biol 1991;218:837-846.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 837-846
-
-
Hunter, C.A.1
Singh, J.2
Thornton, J.M.3
-
87
-
-
0032546782
-
π-Stacking interactions-alive and well in proteins
-
McGaughey GB, Gagne M, Rappe AK. π-stacking interactions-alive and well in proteins. J Mol Biol 1998;273:15458-15463.
-
(1998)
J. Mol. Biol.
, vol.273
, pp. 15458-15463
-
-
McGaughey, G.B.1
Gagne, M.2
Rappe, A.K.3
-
90
-
-
0032416666
-
Crystal structure of constitutive endothelial nitric oxide synthase: A paradigm for pterin function involving a novel metal center
-
Raman CS, Li HY, Martasek P, Southan G, Masters B S S, Poulos TL. Crystal structure of constitutive endothelial nitric oxide synthase: a paradigm for pterin function involving a novel metal center. Cell 1998;95:939-950.
-
(1998)
Cell.
, vol.95
, pp. 939-950
-
-
Raman, C.S.1
Li, H.Y.2
Martasek, P.3
Southan, G.4
Masters, B.S.S.5
Poulos, T.L.6
-
91
-
-
0015928945
-
Theoretical model for effects of local nonpolar heme environments on redox potentials in cytochromes
-
Kassner RJ. Theoretical model for effects of local nonpolar heme environments on redox potentials in cytochromes. J Am Chem Soc 1973;95:2674-2677.
-
(1973)
J. Am. Chem. Soc.
, vol.95
, pp. 2674-2677
-
-
Kassner, R.J.1
-
93
-
-
0030996718
-
Control of metalloprotein redox potentials: What does site-directed mutagenesis of hemoproteins tell us?
-
Mauk AG, Moore GR. Control of metalloprotein redox potentials: What does site-directed mutagenesis of hemoproteins tell us? J Biol Inorg Chem 1997;2:119-125.
-
(1997)
J. Biol. Inorg. Chem.
, vol.2
, pp. 119-125
-
-
Mauk, A.G.1
Moore, G.R.2
-
94
-
-
0041972670
-
How cytochromes with different folds control heme redox potentials
-
Mao JJ, Hauser K, Gunner MR. How cytochromes with different folds control heme redox potentials. Biochemistry 2003;42:9829-9840.
-
(2003)
Biochemistry
, vol.42
, pp. 9829-9840
-
-
Mao, J.J.1
Hauser, K.2
Gunner, M.R.3
-
95
-
-
0039021674
-
Replacement of the proximal histidine iron ligand by a cysteine or tyrosine converts heme oxygenase to an oxidase
-
Liu Y, Moenne-Loccoz P, Hildebrand DP, Wilks A, Loehr TM, Mauk AG, de Montellano PRO. Replacement of the proximal histidine iron ligand by a cysteine or tyrosine converts heme oxygenase to an oxidase. Biochemistry 1999;38:3733-3743.
-
(1999)
Biochemistry
, vol.38
, pp. 3733-3743
-
-
Liu, Y.1
Moenne-Loccoz, P.2
Hildebrand, D.P.3
Wilks, A.4
Loehr, T.M.5
Mauk, A.G.6
De Montellano, P.R.O.7
-
96
-
-
33846099581
-
Thermodynamic investigation into the mechanisms of proton-coupled electron transfer events in heme protein maquettes
-
Reddi AR, Reedy CJ, Mui S, Gibney BR. Thermodynamic investigation into the mechanisms of proton-coupled electron transfer events in heme protein maquettes. Biochemistry 2007;46:291-305.
-
(2007)
Biochemistry
, vol.46
, pp. 291-305
-
-
Reddi, A.R.1
Reedy, C.J.2
Mui, S.3
Gibney, B.R.4
-
98
-
-
0021754871
-
Role of heme propionate groups in cytochrome-b5 electron-transfer
-
Reid LS, Mauk MR, Mauk AG. Role of heme propionate groups in cytochrome-b5 electron-transfer. J Am Chem Soc 1984;106:2182-2185.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 2182-2185
-
-
Reid, L.S.1
Mauk, M.R.2
Mauk, A.G.3
-
99
-
-
0031822307
-
The role of heme propionate in controlling the redox potential of heme: Square wave voltammetry of protoporphyrinato IX iron (III) in aqueous surfactant micelles
-
Das DK, Medhi OK. The role of heme propionate in controlling the redox potential of heme: square wave voltammetry of protoporphyrinato IX iron (III) in aqueous surfactant micelles. J Inorg Biochem 1998;70:83-90.
-
(1998)
J. Inorg. Biochem.
, vol.70
, pp. 83-90
-
-
Das, D.K.1
Medhi, O.K.2
-
100
-
-
1242330313
-
Phe393 mutants of cytochrome P450BM3 with modified heme redox potentials have altered heme vinyl and propionate conformations
-
Chen ZC, Ost T W B, Schelvis JPM. Phe393 mutants of cytochrome P450BM3 with modified heme redox potentials have altered heme vinyl and propionate conformations. Biochemistry 2004;43:1798-1808.
-
(2004)
Biochemistry
, vol.43
, pp. 1798-1808
-
-
Chen, Z.C.1
Ost, T.W.B.2
Schelvis, J.P.M.3
-
101
-
-
0032583439
-
Effects of ligation and folding on reduction potentials of heme proteins
-
Tezcan FA, Winkler JR, Gray HB. Effects of ligation and folding on reduction potentials of heme proteins. J Am Chem Soc 1998;120:13383-13388.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 13383-13388
-
-
Tezcan, F.A.1
Winkler, J.R.2
Gray, H.B.3
-
103
-
-
0034852814
-
High-resolution structures of the oxidized and reduced states of cytochrome c-554 from Nitrosomonas europaea
-
Iverson TM, Arciero DM, Hooper AB, Rees DC. High-resolution structures of the oxidized and reduced states of cytochrome c-554 from Nitrosomonas europaea. J Biol Inorg Chem 2001;6:390-397.
-
(2001)
J. Biol. Inorg. Chem.
, vol.6
, pp. 390-397
-
-
Iverson, T.M.1
Arciero, D.M.2
Hooper, A.B.3
Rees, D.C.4
-
104
-
-
67349181685
-
High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens
-
Polyakov KM, Boyko KM, Tikhonova TV, Slutsky A, Antipov AN, Zvyagilskaya RA, Popov AN, Bourenkov GP, Lamzin VS, Popov VO. High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens. J Mol Biol 2009;389:846-862.
-
(2009)
J. Mol. Biol.
, vol.389
, pp. 846-862
-
-
Polyakov, K.M.1
Boyko, K.M.2
Tikhonova, T.V.3
Slutsky, A.4
Antipov, A.N.5
Zvyagilskaya, R.A.6
Popov, A.N.7
Bourenkov, G.P.8
Lamzin, V.S.9
Popov, V.O.10
-
105
-
-
0034153610
-
Bacterial respiration: A flexible process for a changing environment
-
Richardson DJ. Bacterial respiration: a flexible process for a changing environment. Microbiology 2000;146:551-571.
-
(2000)
Microbiology
, vol.146
, pp. 551-571
-
-
Richardson, D.J.1
-
106
-
-
4744376163
-
Octaheme tetrathionate reductase is a respiratory enzyme with novel heme ligation
-
Mowat CG, Rothery E, Miles CS, McIver L, Doherty MK, Drewette K, Taylor P, Walkinshaw MD, Chapman SK, Reid GA. Octaheme tetrathionate reductase is a respiratory enzyme with novel heme ligation. Nature Struct Mol Biol 2004;11:1023-1024.
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 1023-1024
-
-
Mowat, C.G.1
Rothery, E.2
Miles, C.S.3
McIver, L.4
Doherty, M.K.5
Drewette, K.6
Taylor, P.7
Walkinshaw, M.D.8
Chapman, S.K.9
Reid, G.A.10
-
107
-
-
0034671914
-
Cytochrome c nitrite reductase from Wolinella succinogenes-structure at 1.6 Å resolution, inhibitor binding, and heme-packing motifs
-
Einsle O, Stach P, Messerschmidt A, Simon J, Kroger A, Huber R, Kroneck PMH. Cytochrome c nitrite reductase from Wolinella succinogenes-structure at 1.6 Å resolution, inhibitor binding, and heme-packing motifs. J Biol Chem 2000;275:39608-39616.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 39608-39616
-
-
Einsle, O.1
Stach, P.2
Messerschmidt, A.3
Simon, J.4
Kroger, A.5
Huber, R.6
Kroneck, P.M.H.7
-
108
-
-
0010049951
-
Structure of fumarate reductase from Wolinella succinogenes at 2.2 Å resolution
-
Lancaster C R D, Kroger A, Auer M, Michel H. Structure of fumarate reductase from Wolinella succinogenes at 2.2 Å resolution. Nature 1999;402:377-385.
-
(1999)
Nature
, vol.402
, pp. 377-385
-
-
Lancaster, C.R.D.1
Kroger, A.2
Auer, M.3
Michel, H.4
-
109
-
-
33845864473
-
Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins
-
Li L, Mustafi D, Fu Q, Tereshko V, Chen DL, Tice JD, Ismagilov RF. Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins. Proc Natl Acad Sci USA 2006;103:19243-19248.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 19243-19248
-
-
Li, L.1
Mustafi, D.2
Fu, Q.3
Tereshko, V.4
Chen, D.L.5
Tice, J.D.6
Ismagilov, R.F.7
-
110
-
-
0031734953
-
Heme packing motifs revealed by the crystal structure of the tetra-heme cytochrome c554 from Nitrosomonas europaea
-
Iverson TM, Arciero DM, Hsu BT, Logan M S P, Hooper AB, Rees DC. Heme packing motifs revealed by the crystal structure of the tetra-heme cytochrome c554 from Nitrosomonas europaea. Nature Struc Biol 1998;5:1005-1012.
-
(1998)
Nature Struc Biol.
, vol.5
, pp. 1005-1012
-
-
Iverson, T.M.1
Arciero, D.M.2
Hsu, B.T.3
Logan, M.S.P.4
Hooper, A.B.5
Rees, D.C.6
-
111
-
-
0015919686
-
Role of heme in formation of structure of cytochrome-c
-
Fisher WR, Taniuchi H, Anfinsen CB. Role of heme in formation of structure of cytochrome-c. J Biol Chem 1973;248:3188-3195.
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 3188-3195
-
-
Fisher, W.R.1
Taniuchi, H.2
Anfinsen, C.B.3
-
112
-
-
0025732606
-
Acid denatured apo-cytochrome-c is a random coil-evidence from small-angle X-ray-scattering and dynamic light-scattering
-
Damaschun G, Damaschun H, Gast K, Gernat C, Zirwer D. Acid denatured apo-cytochrome-c is a random coil-evidence from small-angle X-ray-scattering and dynamic light-scattering. Bioch Biophys Acta 1991;1078:289-295.
-
(1991)
Bioch Biophys. Acta
, vol.1078
, pp. 289-295
-
-
Damaschun, G.1
Damaschun, H.2
Gast, K.3
Gernat, C.4
Zirwer, D.5
-
114
-
-
4444368232
-
Biosynthesis of artificial microperoxidases by exploiting the secretion and cytochrome c maturation apparatuses of Escherichia coli
-
Braun M, Thony-Meyer L. Biosynthesis of artificial microperoxidases by exploiting the secretion and cytochrome c maturation apparatuses of Escherichia coli. Proc Natl Acad Sci USA 2004;101:12830-12835.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12830-12835
-
-
Braun, M.1
Thony-Meyer, L.2
-
115
-
-
0036005637
-
Role of cofactors in protein folding
-
Wittung-Stafshede P. Role of cofactors in protein folding. Acc Chem Res 2002;35:201-208.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 201-208
-
-
Wittung-Stafshede, P.1
-
116
-
-
0027337728
-
cam is a native protein with some intermediate-like properties
-
cam is a native protein with some intermediate-like properties. Biochemistry 1993;32:8856-8862.
-
(1993)
Biochemistry
, vol.32
, pp. 8856-8862
-
-
Pfeil, W.1
Nolting, B.O.2
Jung, C.3
-
117
-
-
33845712017
-
An induced fit conformational change underlies the binding mechanism of the heme transport proteobacteria-protein HemS
-
Schneider S, Sharp KH, Barker PD, Paoli M. An induced fit conformational change underlies the binding mechanism of the heme transport proteobacteria-protein HemS. J Biol Chem 2006;281:32606-32610.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 32606-32610
-
-
Schneider, S.1
Sharp, K.H.2
Barker, P.D.3
Paoli, M.4
-
122
-
-
0030575785
-
Is apomyoglobin a molten globule? Structural characterization by NMR
-
Eliezer D, Wright PE. Is apomyoglobin a molten globule? Structural characterization by NMR. J Mol Biol 1996;263:531-538.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 531-538
-
-
Eliezer, D.1
Wright, P.E.2
-
123
-
-
34447526071
-
Structural and thermodynamic consequences of b heme binding for monomeric apoglobins and other apoproteins
-
Landfried DA, Vuletich DA, Pond MP, Lecomte J T J. Structural and thermodynamic consequences of b heme binding for monomeric apoglobins and other apoproteins. Gene 2007;398:12-28.
-
(2007)
Gene
, vol.398
, pp. 12-28
-
-
Landfried, D.A.1
Vuletich, D.A.2
Pond, M.P.3
Lecomte, J.T.J.4
-
124
-
-
0037424264
-
Comparison of the heme-free and-bound crystal structures of human heme oxygenase-1
-
Lad L, Schuller DJ, Shimizu H, Friedman J, Li HY, de Montellano P R O, Poulos TL. Comparison of the heme-free and-bound crystal structures of human heme oxygenase-1. J Biol Chem 2003;278:7834-7843.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 7834-7843
-
-
Lad, L.1
Schuller, D.J.2
Shimizu, H.3
Friedman, J.4
Li, H.Y.5
De Montellano, P.R.O.6
Poulos, T.L.7
-
125
-
-
38349194082
-
Comparative analysis of structural and dynamic properties of the loaded and unloaded hemophore HasA: Functional implications
-
Wolff N, Izadi-Pruneyre N, Couprie J, Habeck M, Linge J, Rieping W, Wandersman C, Nilges M, Delepierre M, Lecroisey A. Comparative analysis of structural and dynamic properties of the loaded and unloaded hemophore HasA: functional implications. J Mol Biol 2008;376:517-525.
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 517-525
-
-
Wolff, N.1
Izadi-Pruneyre, N.2
Couprie, J.3
Habeck, M.4
Linge, J.5
Rieping, W.6
Wandersman, C.7
Nilges, M.8
Delepierre, M.9
Lecroisey, A.10
-
126
-
-
33846121641
-
Incorporation of designed extended chromophores into amphiphilic 4-helix bundle peptides for nonlinear optical biomolecular materials
-
Xu T, Wu SP, Miloradovic I, Therien MJ, Blasie JK. Incorporation of designed extended chromophores into amphiphilic 4-helix bundle peptides for nonlinear optical biomolecular materials. Nano Lett 2006;6:2387-2394.
-
(2006)
Nano. Lett.
, vol.6
, pp. 2387-2394
-
-
Xu, T.1
Wu, S.P.2
Miloradovic, I.3
Therien, M.J.4
Blasie, J.K.5
-
127
-
-
0035421273
-
Structure of human cystathionine beta-synthase: A unique pyridoxal 5'-phosphate-dependent heme protein
-
Meier M, Janosik M, Kery V, Kraus JP, Burkhard P. Structure of human cystathionine beta-synthase: a unique pyridoxal 5'-phosphate-dependent heme protein. EMBO J 2001;20:3910-3916.
-
(2001)
EMBO J.
, vol.20
, pp. 3910-3916
-
-
Meier, M.1
Janosik, M.2
Kery, V.3
Kraus, J.P.4
Burkhard, P.5
-
128
-
-
34548810845
-
Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase
-
Zubieta C, Joseph R, Krishna SS, McMullan D, Kapoor M, Axelrod HL, Miller MD, Abdubek P, Acosta C, Astakhova T, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Reyes R, Rife CL, Schimmel P, Trout CV, van den Bedem H, Weekes D, White A, Xu QP, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase. Tyr A Proteins: Struc Func Bioinf 2007;69:234-243.
-
(2007)
Tyr A Proteins: Struc Func. Bioinf
, vol.69
, pp. 234-243
-
-
Zubieta, C.1
Joseph, R.2
Krishna, S.S.3
McMullan, D.4
Kapoor, M.5
Axelrod, H.L.6
Miller, M.D.7
Abdubek, P.8
Acosta, C.9
Astakhova, T.10
Carlton, D.11
Chiu, H.J.12
Clayton, T.13
Deller, M.C.14
Duan, L.15
Elias, Y.16
Elsliger, M.A.17
Feuerhelm, J.18
Grzechnik, S.K.19
Hale, J.20
Han, G.W.21
Jaroszewski, L.22
Jin, K.K.23
Klock, H.E.24
Knuth, M.W.25
Kozbial, P.26
Kumar, A.27
Marciano, D.28
Morse, A.T.29
Murphy, K.D.30
Nigoghossian, E.31
Okach, L.32
Oommachen, S.33
Reyes, R.34
Rife, C.L.35
Schimmel, P.36
Trout, C.V.37
Van Den Bedem, H.38
Weekes, D.39
White, A.40
Xu, Q.P.41
Hodgson, K.O.42
Wooley, J.43
Deacon, A.M.44
Godzik, A.45
Lesley, S.A.46
Wilson, I.A.47
more..
-
129
-
-
33751031794
-
Structural insights into pathogenic mutations in heme-dependent cystathionine-beta-synthase
-
Yamanishi M, Kabil O, Sen S, Banerjee R. Structural insights into pathogenic mutations in heme-dependent cystathionine-beta-synthase. J Inorg Biochem 2006;100:1988-1995.
-
(2006)
J. Inorg. Biochem.
, vol.100
, pp. 1988-1995
-
-
Yamanishi, M.1
Kabil, O.2
Sen, S.3
Banerjee, R.4
-
130
-
-
34249809406
-
Properties of an unusual heme cofactor in PLP-dependent cystathionine beta-synthase
-
Singh S, Madzelan P, Banerjee R. Properties of an unusual heme cofactor in PLP-dependent cystathionine beta-synthase. Nat Prod Reports 2007;24:631-639.
-
(2007)
Nat. Prod. Reports
, vol.24
, pp. 631-639
-
-
Singh, S.1
Madzelan, P.2
Banerjee, R.3
-
131
-
-
2942542787
-
Visualization of PLP-bound intermediates in hemeless variants of human cystathionine beta-synthase: Evidence that lysine 119 is a general base
-
Evande R, Ojha S, Banerjee R. Visualization of PLP-bound intermediates in hemeless variants of human cystathionine beta-synthase: evidence that lysine 119 is a general base. Arch Biochem Biophys 2004;427:188-196.
-
(2004)
Arch. Biochem. Biophys.
, vol.427
, pp. 188-196
-
-
Evande, R.1
Ojha, S.2
Banerjee, R.3
-
133
-
-
58849130132
-
The binding of haem and zinc in the 1.9 A X-ray structure of Escherichia coli bacterioferritin
-
Willies SC, Isupov MN, Garman EF, Littlechild JA. The binding of haem and zinc in the 1.9 A X-ray structure of Escherichia coli bacterioferritin. J Biol Inorg Chem 2009;14:201-207.
-
(2009)
J. Biol. Inorg. Chem.
, vol.14
, pp. 201-207
-
-
Willies, S.C.1
Isupov, M.N.2
Garman, E.F.3
Littlechild, J.A.4
-
134
-
-
0029897140
-
The heme redox center of chloroplast cytochrome f is linked to a buried five-water chain
-
Martinez SE, Huang D, Ponomarev M, Cramer WA, Smith JL. The heme redox center of chloroplast cytochrome f is linked to a buried five-water chain. Protein Sci 1996;5:1081-1092.
-
(1996)
Protein Sci.
, vol.5
, pp. 1081-1092
-
-
Martinez, S.E.1
Huang, D.2
Ponomarev, M.3
Cramer, W.A.4
Smith, J.L.5
-
135
-
-
0038853525
-
Crystal structures of myoglobin-ligand complexes at near-atomic resolution
-
Vojtechovsky J, Chu K, Berendzen J, Sweet RM, Schlichting I. Crystal structures of myoglobin-ligand complexes at near-atomic resolution. Biophys J 1999;77:2153-2174.
-
(1999)
Biophys. J.
, vol.77
, pp. 2153-2174
-
-
Vojtechovsky, J.1
Chu, K.2
Berendzen, J.3
Sweet, R.M.4
Schlichting, I.5
-
136
-
-
56249132984
-
Changes in quaternary structure in the signaling mechanisms of PAS domains
-
Ayers RA, Moffat K. Changes in quaternary structure in the signaling mechanisms of PAS domains. Biochemistry 2008;47:12078-12086.
-
(2008)
Biochemistry
, vol.47
, pp. 12078-12086
-
-
Ayers, R.A.1
Moffat, K.2
-
137
-
-
4444333687
-
Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases
-
Pellicena P, Karow DS, Boon EM, Marletta MA, Kuriyan J. Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases. Proc Natl Acad Sci USA 2004;101:12854-12859.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12854-12859
-
-
Pellicena, P.1
Karow, D.S.2
Boon, E.M.3
Marletta, M.A.4
Kuriyan, J.5
-
138
-
-
14144256660
-
Heme-assisted S-nitrosation of a proximal thiolate in a nitric oxide transport protein
-
Weichsel A, Maes EM, Andersen JF, Valenzuela JG, Shokhireva TK, Walker FA, Montfort WR. Heme-assisted S-nitrosation of a proximal thiolate in a nitric oxide transport protein. Proc Natl Acad Sci USA 2005;102:594-599.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 594-599
-
-
Weichsel, A.1
Maes, E.M.2
Andersen, J.F.3
Valenzuela, J.G.4
Shokhireva, T.K.5
Walker, F.A.6
Montfort, W.R.7
-
139
-
-
0022919721
-
Crystal-structure of substratefree Pseudomonas putida cytochrome-P-450
-
Poulos TL, Finzel BC, Howard AJ. Crystal-structure of substratefree Pseudomonas putida cytochrome-P-450. Biochemistry 1986;25:5314-5322.
-
(1986)
Biochemistry
, vol.25
, pp. 5314-5322
-
-
Poulos, T.L.1
Finzel, B.C.2
Howard, A.J.3
-
140
-
-
33644511372
-
Crystal structure of human indoleamine 2, 3-dioxygenase: Catalytic mechanism of O-2 incorporation by a heme-containing dioxygenase
-
Sugimoto H, Oda SI, Otsuki T, Hino T, Yoshida T, Shiro Y. Crystal structure of human indoleamine 2, 3-dioxygenase: catalytic mechanism of O-2 incorporation by a heme-containing dioxygenase. Proc Natl Acad Sci USA 2006;103:2611-2616.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 2611-2616
-
-
Sugimoto, H.1
Oda, S.I.2
Otsuki, T.3
Hino, T.4
Yoshida, T.5
Shiro, Y.6
-
141
-
-
0032979703
-
The crystal structure of HasA, a hemophore secreted by Serratia marcescens
-
Arnoux P, Haser R, Izadi N, Lecroisey A, Delepierre M, Wandersman C, Czjzek M. The crystal structure of HasA, a hemophore secreted by Serratia marcescens. Nature Struct Biol 1999;6:516-520.
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 516-520
-
-
Arnoux, P.1
Haser, R.2
Izadi, N.3
Lecroisey, A.4
Delepierre, M.5
Wandersman, C.6
Czjzek, M.7
-
142
-
-
22544467474
-
Binding of the respiratory chain inhibitor antimycin to the mitochondrial bc (1) complex: A new crystal structure reveals an altered intramolecular hydrogen-bonding pattern
-
Huang LS, Cobessi D, Tung EY, Berry EA. Binding of the respiratory chain inhibitor antimycin to the mitochondrial bc (1) complex: a new crystal structure reveals an altered intramolecular hydrogen-bonding pattern. J Mol Biol 2005;351:573-597.
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 573-597
-
-
Huang, L.S.1
Cobessi, D.2
Tung, E.Y.3
Berry, E.A.4
-
143
-
-
0000494859
-
Assignment of cytochrome hemes in crystallized reaction centers from Rhodopseudomonas viridis
-
Fritzsch G, Buchanan S, Michel H. Assignment of cytochrome hemes in crystallized reaction centers from Rhodopseudomonas viridis. Biochim et Biophys Acta 1989;977:157-162.
-
(1989)
Biochim. et Biophys. Acta
, vol.977
, pp. 157-162
-
-
Fritzsch, G.1
Buchanan, S.2
Michel, H.3
|