Backbone dynamics of apocytochrome b5 in its native, partially folded state

Biochemistry

Volumn 38, Issue 8, 1999, Pages 2577-2589

  Bhattacharya, Shibani ^a   Falzone, Christopher J ^a   Lecomte, Juliette T J ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APOCYTOCHROME B5; APOPROTEIN; CYTOCHROME B5; HEME; PROTEIN SUBUNIT; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; BINDING AFFINITY; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; ENTHALPY; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; STRUCTURE ANALYSIS; TEMPERATURE SENSITIVITY;

ANIMALS; APOPROTEINS; CYTOCHROME B GROUP; CYTOCHROMES B; HEME; HYDROGEN-ION CONCENTRATION; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTONS; RATS; TEMPERATURE; THERMODYNAMICS; TIME FACTORS;

ANIMALIA; MUS;

EID: 0033596703     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982316d     Document Type: Article

References (82)

1. Karplus, M., and McCammon, J. A. (1983) Annu. Rev. Biochem. 52, 263-300.
2. Williams, R. J. P. (1989) Eur. J. Biochem. 183, 479-497.
3. Gerstein, M., Lesk, A. M., and Chothia, C. (1994) Biochemistry 33, 6739-6749.
4. Epstein, D. M., Benkovic, S. J., and Wright, P. E. (1995) Biochemistry 34, 11037-11048.
5. Hodsdon, M. E., and Cistola, D. P. (1997) Biochemistry 36, 2278-2290.
6. Carr, P. A., Erickson, H. P., and Palmer, A. G., III (1997) Structure 5, 949-959.
7. Lefèvre, J.-F., Dayie, K. T., Peng, J. W., and Wagner, G. (1996) Biochemistry 35, 2674-2686.
8. Palmer, A. G., III, Williams, J., and McDermott, A. (1996) J. Phys. Chem. 100, 13293-13310.
9. Kay, L. E. (1998) Nat. Struct. Biol. 5 (NMR Supplement), 513-517.
10. Dill, K. A., and Shortle, D. (1991) Annu. Rev. Biochem. 60, 795-825.
11. Shortle, D. R. (1996) Curr. Opin. Struct. Biol. 6, 24-30.
12. Alexandrescu, A. T., Jahnke, W., Wiltscheck, R., and Blommers, M. J. (1996) J. Mol. Biol. 260, 570-587.
13. Buck, M., Schwalbe, H., and Dobson, C. M. (1996) J. Mol. Biol. 257, 669-683.
14. Schwalbe, H., Fiebig, K. M., Buck, M., Jones, J. A., Grimshaw, S. B., Spencer, A., Glaser, S. J., Smith, L. J., and Dobson, C. M. (1997) Biochemistry 36, 8977-8991.
15. Bratscher, B., Brüschweiler, R., and Ernst, R. R. (1997) Biochemistry 36, 13043-13053.
16. Frank, M. K., Clore, G. M., and Gronenborn, A. M. (1995) Protein Sci. 4, 2605-2615.
17. Fong, S., Bycroft, M., Clarke, J., and Freund, S. M. (1998) J. Mol. Biol. 278, 417-429.
18. van Mierlo, C. P., Darby, N. J., Keeler, J., Neuhaus, D., and Creighton, T. E. (1993) J. Mol. Biol. 229, 1125-1146.
19. Barbar, E., Hare, M., Daragan, V., Barany, G., and Woodward, C. (1998) Biochemistry 37, 7822-7833.
20. Velick, S., and Strittmatter, P. (1956) J. Biol. Chem. 221, 265-275.
21. Vergères, G., and Waskell, L. (1995) Biochimie 77, 604-620.
22. Mathews, F. S., and Czerwinski, E. W. (1976) The Enzymes of Biological Membranes, Vol. 4, Plenum Press, New York.
23. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950.
24. Huntley, T. E., and Strittmatter, P. (1972) J. Biol. Chem. 247, 4641-4647.
25. Pfeil, W. (1993) Protein Sci. 2, 1497-1501.
26. Falzone, C. J., Mayer, M. R., Whiteman, E. L., Moore, C. D., and Lecomte, J. T. J. (1996) Biochemistry 35, 6519-6526.
27. Moore, C. D., and Lecomte, J. T. J. (1993) Biochemistry 32, 199-207.
28. Constans, A. J., Mayer, M. R., Sukits, S. F., and Lecomte, J. T. J. (1998) Protein Sci. 7, 1983-1993.
29. Kelly, G. P., Muskett, F. W., and Whitford, D. (1997) Eur. J. Biochem. 245, 349-354.
30. Dangi, B., Sarma, S., Yan, C., Banville, D. L., and Guiles, R. D. (1998) Biochemistry 37, 8289-8302.
31. Storch, E. M., and Daggett, V. (1996) Biochemistry 35, 11596-11604.
32. Teale, F. W. J. (1959) Biochim. Biophys. Acta 35, 543.
33. Marion, D., and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
34. Kay, L. E., Torchia, D. A., and Bax, A. (1989) Biochemistry 28, 8972-8979.
35. Skelton, N. J., Palmer, A. G., III, Akke, M., Kördel, J., Rance, M., and Chazin, W. J. (1993) J. Magn. Reson., Ser. B 102, 253-264.
36. Sklenár, V., Piotto, M., Lepik, R., and Saudek, V. (1993) J. Magn. Reson. 102, 241-245.
37. Farrow, N. A., Zhang, O., Forman-Kay, J. D., and Kay, L. E. (1995) Biochemistry 34, 868-878.
38. Shaka, A. J., Barker, P. B., and Freeman, R. (1988) J. Magn. Reson. 64, 547-552.
39. Akke, M., and Palmer, A. G., III (1996) J. Am. Chem. Soc. 118, 911-912.
40. Zuiderweg, E. R. P. (1990) J. Magn. Reson. 86, 346-357.
41. Marion, D., Ikura, M., Tschudin, R., and Bax, A. (1989) J. Magn. Reson. 85, 393-399.
42. Wishart, D. S., Bigam, C. G., Yao, J., Abildgaard, F., Dyson, H. J., Oldfield, E., Markley, J. L., and Sykes, B. D. (1995) J. Biomol. NMR 6, 135-140.
43. Live, D. H., Davis, D. G., Agosta, W. C., and Cowburn, D. (1984) J. Am. Chem. Soc. 106, 1939-1941.
44. Palmer, A. G., III, Rance, M., and Wright, P. E. (1991) J. Am. Chem. Soc. 113, 4371-4380.
45. Abragam, A. (1961) The Principles of Nuclear Magnetism, Clarendon Press, Oxford, U.K.
46. Hiyami, Y., Niu, C.-H., Silverton, J. V., Bavoso, A., and Torchia, D. A. (1988) J. Am. Chem. Soc. 110, 2378-2383.
47. Farrow, N. A., Zhang, O., Szabo, A., Torchia, D. A., and Kay, L. E. (1995) J. Biomol. NMR 6, 153-162.
48. Lipari, G., and Szabo, A. (1982) J. Am. Chem. Soc. 104, 4546-4559.
49. Clore, G. M., Szabo, A., Bax, A., Kay, L. E., Driscoll, P. C., and Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 4989-4991.
50. Mandel, A. M., Akke, M., and Palmer, A. G., III (1996) Biochemistry 35, 16009-16023.
51. Yao, S., Hinds, M. G., and Norton, R. S. (1998) J. Magn. Reson. 131, 347-350.
52. Mandel, A. M., Akke, M., and Palmer, A. G., III (1995) J. Mol. Biol. 246, 144-163.
53. Tjandra, N., Feller, S. E., Pastor, R. W., and Bax, A. (1995) J. Am. Chem. Soc. 117, 12562-12566.
54. de la Torre, J. G., and Bloomfield, V. A. (1981) Q. Rev. Biophys. 14, 81-139.
55. Venable, R. M., and Pastor, R. W. (1988) Biopolymers 27, 1001-1014.
56. Creighton, T. E. (1995) Proteins, Structures & Molecular Properties, 2nd ed., W. H. Freeman & Co., New York.
57. Dayie, K. T., Wagner, G., and Lefèvre, J.-F. (1996) Annu. Rev. Phys. Chem. 47, 243-282.
58. Orekhov, V., Pervushin, K. V., and Arseniev, A. S. (1994) Eur. J. Biochem. 219, 887-896.
59. Szyperski, T., Lüginbuhl, P., Otting, G., Guntert, P., and Wüthrich, K. (1993) J. Biomol. NMR 3, 151-164.
60. Allerhand, A., and Gutowsky, H. S. (1965) J. Chem. Phys. 42, 1587-1599.
61. Davis, D. G., Perlman, M. E., and London, R. E. (1994) J. Magn. Reson., Ser. B 104, 266-275.
62. Fairbrother, W. J., Liu, J., Pisacane, P. I., Sliwkowski, M. X., and Palmer, A. G., III (1998) J. Mol. Biol. 279, 1149-1161.
63. Fushman, D., Cahill, S., and Cowburn, D. (1997) J. Mol. Biol. 266, 173-194.
64. Lecomte, J. T. J., and Moore, C. D. (1991) J. Am. Chem. Soc. 113, 9663-9665.
65. Landry, S. J., Steede, N. K., and Maskos, K. (1997) Biochemistry 36, 10975-10986.
66. Schurr, J. M., Babcock, H. P., and Fujimoto, B. S. (1994) J. Magn. Reson., Ser. B 105, 211-224.
67. Moore, C. D., al-Misky, O. N., and Lecomte, J. T. J. (1991) Biochemistry 30, 8357-8365.
68. van Dijk, A. A., Scheek, R. M., Dijkstra, K., Wolters, G. K., and Robillard, G. T. (1992) Biochemistry 31, 9063-9072.
69. Banci, L., Bertini, I., Cavazza, C., Felli, I. C., and Koulougliotis, D. (1998) Biochemistry 37, 12320-12330.
70. Mortuza, G. B., and Whitford, D. (1997) FEBS Lett. 412, 610-614.
71. Farrow, N. A., Zhang, O., Forman-Kay, J. D., and Kay, L. E. (1997) Biochemistry 36, 2390-2402.
72. Flory, P. J. (1953) Principles of Polymer Chemistry, Cornell University Press, Ithaca, NY.
73. Cantor, C. R., and Schimmel, P. R. (1980) Biophysical Chemistry Part III: The Behavior of Biological Macromolecules, W. H. Freeman & Co., San Francisco, CA.
74. Alexandrescu, A. T., Rathgeb-Szabo, K., Rumpel, K., Jahnke, W., Schulthess, T., and Kammerer, R. A. (1998) Protein Sci. 7, 389-402.
75. Frauenfelder, H., and McMahon, B. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 4795-4797.
76. McCammon, J. A., and Harvey, S. C. (1987) Dynamics of Proteins and Nucleic Acids, Cambridge University Press, New York.
77. Philippopoulos, M., Mandel, A. M., Palmer, A. G., III, and Lim, C. (1997) Proteins: Funct., Struct., Genet. 28, 481-493.
78. Hargrove, M. S., Barrick, D., and Olson, J. S. (1996) Biochemistry 35, 11293-11299.
79. Robinson, C. R., Liu, Y., Thomson, J. A., Sturtevant, J. M., and Sugar, S. G. (1997) Biochemistry 36, 16141-16146.
80. Vergères, G., Chen, D. Y., Wu, F. F., and Waskell, L. (1993) Arch. Biochem. Biophys. 305, 231-241.
81. Gruenke, L. D., Sun, J., Loehr, T. M., and Waskell, L. (1997) Biochemistry 36, 7114-7125.
82. Storch, E. M., and Daggett, V. (1995) Biochemistry 34, 9682-9693.