-
1
-
-
33646943202
-
Molecular dynamics: survey of methods for simulating the activity of proteins
-
Adcock S.A., and McCammon J.A. Molecular dynamics: survey of methods for simulating the activity of proteins. Chem. Rev. 106 (2006) 1589-1615
-
(2006)
Chem. Rev.
, vol.106
, pp. 1589-1615
-
-
Adcock, S.A.1
McCammon, J.A.2
-
2
-
-
58149292269
-
Computer modeling in biotechnology: a partner in development
-
Aksimentiev A., Brunner R., Cohen J., Comer J., Cruz-Chu E., Hardy D., Rajan A., Shih A., Sigalov G., Yin Y., et al. Computer modeling in biotechnology: a partner in development. Methods Mol. Biol. 474 (2008) 181-234
-
(2008)
Methods Mol. Biol.
, vol.474
, pp. 181-234
-
-
Aksimentiev, A.1
Brunner, R.2
Cohen, J.3
Comer, J.4
Cruz-Chu, E.5
Hardy, D.6
Rajan, A.7
Shih, A.8
Sigalov, G.9
Yin, Y.10
-
3
-
-
33845204189
-
Stability and dynamics of virus capsids described by coarse-grained modeling
-
Arkhipov A., Freddolino P.L., and Schulten K. Stability and dynamics of virus capsids described by coarse-grained modeling. Structure 14 (2006) 1767-1777
-
(2006)
Structure
, vol.14
, pp. 1767-1777
-
-
Arkhipov, A.1
Freddolino, P.L.2
Schulten, K.3
-
4
-
-
70349778500
-
Elucidating the mechanism behind irreversible deformation of viral capsids
-
Arkhipov A., Roos W.H., Wuite G.J.L., and Schulten K. Elucidating the mechanism behind irreversible deformation of viral capsids. Biophys. J. 97 (2009) 2061-2069
-
(2009)
Biophys. J.
, vol.97
, pp. 2061-2069
-
-
Arkhipov, A.1
Roos, W.H.2
Wuite, G.J.L.3
Schulten, K.4
-
5
-
-
34547902820
-
Mechanism of Na+/H+ antiporting
-
Arkin I.T., Xu H., Jensen M., Arbely E., Bennett E.R., Bowers K.J., Chow E., Dror R.O., Eastwood M.P., Flitman-Tene R., et al. Mechanism of Na+/H+ antiporting. Science 317 (2007) 799-803
-
(2007)
Science
, vol.317
, pp. 799-803
-
-
Arkin, I.T.1
Xu, H.2
Jensen, M.3
Arbely, E.4
Bennett, E.R.5
Bowers, K.J.6
Chow, E.7
Dror, R.O.8
Eastwood, M.P.9
Flitman-Tene, R.10
-
6
-
-
0035941407
-
The complete gene sequence of titin, expression of an unusual approximate to 700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system
-
Bang M.L., Centner T., Fornoff F., Geach A.J., Gotthardt M., McNabb M., Witt C.C., Labeit D., Gregorio C.C., Granzier H., et al. The complete gene sequence of titin, expression of an unusual approximate to 700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system. Circ. Res. 89 (2001) 1065-1072
-
(2001)
Circ. Res.
, vol.89
, pp. 1065-1072
-
-
Bang, M.L.1
Centner, T.2
Fornoff, F.3
Geach, A.J.4
Gotthardt, M.5
McNabb, M.6
Witt, C.C.7
Labeit, D.8
Gregorio, C.C.9
Granzier, H.10
-
7
-
-
52049108954
-
Hearing mechanics: a fly in your ear
-
Bechstedt S., and Howard J. Hearing mechanics: a fly in your ear. Curr. Biol. 18 (2008) R869-R870
-
(2008)
Curr. Biol.
, vol.18
-
-
Bechstedt, S.1
Howard, J.2
-
8
-
-
0034958883
-
Spectrin and ankyrin-based pathways: metazoan inventions for integrating cells into tissues
-
Bennett V., and Baines A.J. Spectrin and ankyrin-based pathways: metazoan inventions for integrating cells into tissues. Physiol. Rev. 81 (2001) 1353-1392
-
(2001)
Physiol. Rev.
, vol.81
, pp. 1353-1392
-
-
Bennett, V.1
Baines, A.J.2
-
9
-
-
0035140976
-
Ankyrins and cellular targeting of diverse membrane proteins to physiological sites
-
Bennett V., and Chen L. Ankyrins and cellular targeting of diverse membrane proteins to physiological sites. Curr. Opin. Cell Biol. 13 (2001) 61-67
-
(2001)
Curr. Opin. Cell Biol.
, vol.13
, pp. 61-67
-
-
Bennett, V.1
Chen, L.2
-
10
-
-
0042744701
-
Mechanical unfolding of a titin Ig domain: structure of transition state revealed by combining atomic force microscopy, protein engineering and molecular dynamics simulations
-
Best R.B., Fowler S.B., Herrera J.L.T., Steward A., Paci E., and Clarke J. Mechanical unfolding of a titin Ig domain: structure of transition state revealed by combining atomic force microscopy, protein engineering and molecular dynamics simulations. J. Mol. Biol. 330 (2003) 867-877
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 867-877
-
-
Best, R.B.1
Fowler, S.B.2
Herrera, J.L.T.3
Steward, A.4
Paci, E.5
Clarke, J.6
-
11
-
-
44949091394
-
Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules
-
Best R.B., Paci E., Hummer G., and Dudko O.K. Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules. J. Phys. Chem. B 112 (2008) 5968-5976
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 5968-5976
-
-
Best, R.B.1
Paci, E.2
Hummer, G.3
Dudko, O.K.4
-
12
-
-
0000316648
-
Difficulties with multiple time stepping and the fast multipole algorithm in molecular dynamics
-
Bishop T.C., Skeel R.D., and Schulten K. Difficulties with multiple time stepping and the fast multipole algorithm in molecular dynamics. J. Comput. Chem. 18 (1997) 1785-1791
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1785-1791
-
-
Bishop, T.C.1
Skeel, R.D.2
Schulten, K.3
-
13
-
-
0037123593
-
C-cadherin ectodomain structure and implications for cell adhesion mechanisms
-
Boggon T.J., Murray J., Chappuis-Flament S., Wong E., Gumbiner B.M., and Shapiro L. C-cadherin ectodomain structure and implications for cell adhesion mechanisms. Science 296 (2002) 1308-1313
-
(2002)
Science
, vol.296
, pp. 1308-1313
-
-
Boggon, T.J.1
Murray, J.2
Chappuis-Flament, S.3
Wong, E.4
Gumbiner, B.M.5
Shapiro, L.6
-
14
-
-
0027333330
-
Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally?
-
Bork P. Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally?. Proteins 17 (1993) 363-374
-
(1993)
Proteins
, vol.17
, pp. 363-374
-
-
Bork, P.1
-
15
-
-
0042508741
-
Pulling geometry defines the mechanical resistance of a β-sheet protein
-
Brockwell D.J., Paci E., Zinober R.C., Beddard G.S., Olmsted P.D., Smith D.A., Perham R.N., and Radford S.E. Pulling geometry defines the mechanical resistance of a β-sheet protein. Nat. Struct. Biol. 10 (2003) 731-737
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 731-737
-
-
Brockwell, D.J.1
Paci, E.2
Zinober, R.C.3
Beddard, G.S.4
Olmsted, P.D.5
Smith, D.A.6
Perham, R.N.7
Radford, S.E.8
-
16
-
-
33847774117
-
Forced unfolding of coiled-coils in fibrinogen by single molecule AFM
-
Brown A.E., Litvinov R.I., Discher D.E., and Weisel J.W. Forced unfolding of coiled-coils in fibrinogen by single molecule AFM. Biophys. J. 92 (2007) L39-L41
-
(2007)
Biophys. J.
, vol.92
-
-
Brown, A.E.1
Litvinov, R.I.2
Discher, D.E.3
Weisel, J.W.4
-
17
-
-
68449088259
-
Multiscale mechanics of fibrin polymer: gel stretching with protein unfolding and loss of water
-
Brown A.E., Litvinov R.I., Discher D.E., Purohit P.K., and Weisel J.W. Multiscale mechanics of fibrin polymer: gel stretching with protein unfolding and loss of water. Science 325 (2009) 741-744
-
(2009)
Science
, vol.325
, pp. 741-744
-
-
Brown, A.E.1
Litvinov, R.I.2
Discher, D.E.3
Purohit, P.K.4
Weisel, J.W.5
-
18
-
-
28444475930
-
Cadherin mechanics and complexation: the importance of calcium binding
-
Cailliez F., and Lavery R. Cadherin mechanics and complexation: the importance of calcium binding. Biophys. J. 89 (2005) 3895-3903
-
(2005)
Biophys. J.
, vol.89
, pp. 3895-3903
-
-
Cailliez, F.1
Lavery, R.2
-
19
-
-
33845366512
-
Dynamics and stability of E-cadherin dimers
-
Cailliez F., and Lavery R. Dynamics and stability of E-cadherin dimers. Biophys. J. 91 (2006) 3964-3971
-
(2006)
Biophys. J.
, vol.91
, pp. 3964-3971
-
-
Cailliez, F.1
Lavery, R.2
-
20
-
-
49649083370
-
Single molecule force spectroscopy reveals engineered metal chelation is a general approach to enhance mechanical stability of proteins
-
Cao Y., Yoo T., and Li H. Single molecule force spectroscopy reveals engineered metal chelation is a general approach to enhance mechanical stability of proteins. Proc. Natl. Acad. Sci. USA 105 (2008) 11152-11157
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 11152-11157
-
-
Cao, Y.1
Yoo, T.2
Li, H.3
-
21
-
-
0033616713
-
Mechanical and chemical unfolding of a single protein: a comparison
-
Carrion-Vazquez M., Oberhauser A., Fowler S., Marszalek P., Broedel S., Clarke J., and Fernandez J. Mechanical and chemical unfolding of a single protein: a comparison. Proc. Natl. Acad. Sci. USA 96 (1999) 3694-3699
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3694-3699
-
-
Carrion-Vazquez, M.1
Oberhauser, A.2
Fowler, S.3
Marszalek, P.4
Broedel, S.5
Clarke, J.6
Fernandez, J.7
-
22
-
-
0042508740
-
The mechanical stability of ubiquitin is linkage dependent
-
Carrion-Vazquez M., Li H., Lu H., Marszalek P., Oberhauser A., and Fernandez J. The mechanical stability of ubiquitin is linkage dependent. Nat. Struct. Biol. 10 (2003) 738-743
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 738-743
-
-
Carrion-Vazquez, M.1
Li, H.2
Lu, H.3
Marszalek, P.4
Oberhauser, A.5
Fernandez, J.6
-
23
-
-
34250878976
-
TRP channels in mechanosensation: direct or indirect activation?
-
Christensen A.P., and Corey D.P. TRP channels in mechanosensation: direct or indirect activation?. Nat. Rev. Neurosci. 8 (2007) 510-521
-
(2007)
Nat. Rev. Neurosci.
, vol.8
, pp. 510-521
-
-
Christensen, A.P.1
Corey, D.P.2
-
24
-
-
0030064676
-
DNA: an extensible molecule
-
Cluzel P., Lebrun A., Heller C., Lavery R., Viovy J.L., Chatenay D., and Caron F. DNA: an extensible molecule. Science 271 (1996) 792-794
-
(1996)
Science
, vol.271
, pp. 792-794
-
-
Cluzel, P.1
Lebrun, A.2
Heller, C.3
Lavery, R.4
Viovy, J.L.5
Chatenay, D.6
Caron, F.7
-
25
-
-
21544448856
-
The elasticity of an individual fibrin fiber clot
-
Collet J.P., Shuman H., Ledger R.E., Lee S., and Weisel J.W. The elasticity of an individual fibrin fiber clot. Proc. Natl. Acad. Sci. USA 102 (2005) 9133-9137
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 9133-9137
-
-
Collet, J.P.1
Shuman, H.2
Ledger, R.E.3
Lee, S.4
Weisel, J.W.5
-
26
-
-
34748910135
-
Stringing the fiddle: the inner ear's two-part invention
-
Corey D.P. Stringing the fiddle: the inner ear's two-part invention. Nat. Neurosci. 10 (2007) 1232-1233
-
(2007)
Nat. Neurosci.
, vol.10
, pp. 1232-1233
-
-
Corey, D.P.1
-
27
-
-
2342429092
-
Tightrope act
-
Corey D.P., and Sotomayor M. Tightrope act. Nature 428 (2004) 901-902
-
(2004)
Nature
, vol.428
, pp. 901-902
-
-
Corey, D.P.1
Sotomayor, M.2
-
28
-
-
1642493664
-
Tuning the mechanical stability of fibronectin type III modules through sequence variation
-
Craig D., Gao M., Schulten K., and Vogel V. Tuning the mechanical stability of fibronectin type III modules through sequence variation. Structure 12 (2004) 21-30
-
(2004)
Structure
, vol.12
, pp. 21-30
-
-
Craig, D.1
Gao, M.2
Schulten, K.3
Vogel, V.4
-
29
-
-
0027256738
-
Realistic simulations of native-protein dynamics in solution and beyond
-
Daggett V., and Levitt M. Realistic simulations of native-protein dynamics in solution and beyond. Annu. Rev. Biophys. Biomol. Struct. 22 (1993) 353-380
-
(1993)
Annu. Rev. Biophys. Biomol. Struct.
, vol.22
, pp. 353-380
-
-
Daggett, V.1
Levitt, M.2
-
30
-
-
0021118122
-
Fibrinogen and fibrin
-
Doolittle R.F. Fibrinogen and fibrin. Annu. Rev. Biochem. 53 (1984) 195-229
-
(1984)
Annu. Rev. Biochem.
, vol.53
, pp. 195-229
-
-
Doolittle, R.F.1
-
31
-
-
42149186359
-
Solvent molecules bridge the mechanical unfolding transition state of a protein
-
Dougan L., Feng G., Lu H., and Fernandez J. Solvent molecules bridge the mechanical unfolding transition state of a protein. Proc. Natl. Acad. Sci. USA 105 (2008) 3185-3190
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 3185-3190
-
-
Dougan, L.1
Feng, G.2
Lu, H.3
Fernandez, J.4
-
32
-
-
67049115585
-
Single-molecule mechanics: new insights from the escape-over-a-barrier problem
-
Dudko O.K. Single-molecule mechanics: new insights from the escape-over-a-barrier problem. Proc. Natl. Acad. Sci. USA 106 (2009) 8795-8796
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 8795-8796
-
-
Dudko, O.K.1
-
33
-
-
0141816804
-
Beyond the conventional description of dynamic force spectroscopy of adhesion bonds
-
Dudko O.K., Filippov A.E., Klafter J., and Urbakh M. Beyond the conventional description of dynamic force spectroscopy of adhesion bonds. Proc. Natl. Acad. Sci. USA 100 (2003) 11378-11381
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 11378-11381
-
-
Dudko, O.K.1
Filippov, A.E.2
Klafter, J.3
Urbakh, M.4
-
34
-
-
33645004171
-
Intrinsic rates and activation free energies from single-molecule pulling experiments
-
Dudko O.K., Hummer G., and Szabo A. Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys. Rev. Lett. 96 (2006) 18101
-
(2006)
Phys. Rev. Lett.
, vol.96
, pp. 18101
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
35
-
-
57349124448
-
Theory, analysis, and interpretation of single-molecule force spectroscopy experiments
-
Dudko O.K., Hummer G., and Szabo A. Theory, analysis, and interpretation of single-molecule force spectroscopy experiments. Proc. Natl. Acad. Sci. USA 105 (2008) 15755-15760
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 15755-15760
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
36
-
-
0031001349
-
Dynamic strength of molecular adhesion bonds
-
Evans E., and Ritchie K. Dynamic strength of molecular adhesion bonds. Biophys. J. 72 (1997) 1541-1555
-
(1997)
Biophys. J.
, vol.72
, pp. 1541-1555
-
-
Evans, E.1
Ritchie, K.2
-
37
-
-
34249936024
-
Forces and bond dynamics in cell adhesion
-
Evans E.A., and Calderwood D.A. Forces and bond dynamics in cell adhesion. Science 316 (2007) 1148-1153
-
(2007)
Science
, vol.316
, pp. 1148-1153
-
-
Evans, E.A.1
Calderwood, D.A.2
-
38
-
-
0028309424
-
Adhesion force between individual ligand-receptor pairs
-
Florin E.L., Moy V.T., and Gaub H.E. Adhesion force between individual ligand-receptor pairs. Science 264 (1994) 415-417
-
(1994)
Science
, vol.264
, pp. 415-417
-
-
Florin, E.L.1
Moy, V.T.2
Gaub, H.E.3
-
39
-
-
0036389817
-
Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering
-
Fowler S.B., Best R.B., Herrera J.L.T., Rutherford T.J., Steward A., Paci E., Karplus M., and Clarke J. Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering. J. Mol. Biol. 322 (2002) 841-849
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 841-849
-
-
Fowler, S.B.1
Best, R.B.2
Herrera, J.L.T.3
Rutherford, T.J.4
Steward, A.5
Paci, E.6
Karplus, M.7
Clarke, J.8
-
41
-
-
70349778502
-
Common structural transitions in explicit-solvent simulations of villin headpiece folding
-
Freddolino P.L., and Schulten K. Common structural transitions in explicit-solvent simulations of villin headpiece folding. Biophys. J. 97 (2009) 2338-2347
-
(2009)
Biophys. J.
, vol.97
, pp. 2338-2347
-
-
Freddolino, P.L.1
Schulten, K.2
-
42
-
-
33644848399
-
Molecular dynamics simulations of the complete satellite tobacco mosaic virus
-
Freddolino P.L., Arkhipov A.S., Larson S.B., McPherson A., and Schulten K. Molecular dynamics simulations of the complete satellite tobacco mosaic virus. Structure 14 (2006) 437-449
-
(2006)
Structure
, vol.14
, pp. 437-449
-
-
Freddolino, P.L.1
Arkhipov, A.S.2
Larson, S.B.3
McPherson, A.4
Schulten, K.5
-
45
-
-
0034805058
-
Simulated refolding of stretched titin immunoglobulin domains
-
Gao M., Lu H., and Schulten K. Simulated refolding of stretched titin immunoglobulin domains. Biophys. J. 81 (2001) 2268-2277
-
(2001)
Biophys. J.
, vol.81
, pp. 2268-2277
-
-
Gao, M.1
Lu, H.2
Schulten, K.3
-
46
-
-
0037569632
-
Unfolding of titin domains studied by molecular dynamics simulations
-
Gao M., Lu H., and Schulten K. Unfolding of titin domains studied by molecular dynamics simulations. J. Muscle Res. Cell Motil. 23 (2002) 513-521
-
(2002)
J. Muscle Res. Cell Motil.
, vol.23
, pp. 513-521
-
-
Gao, M.1
Lu, H.2
Schulten, K.3
-
47
-
-
0344736695
-
Structure and functional significance of mechanically unfolded fibronectin type III1 intermediates
-
Gao M., Craig D., Lequin O., Campbell I.D., Vogel V., and Schulten K. Structure and functional significance of mechanically unfolded fibronectin type III1 intermediates. Proc. Natl. Acad. Sci. USA 100 (2003) 14784-14789
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14784-14789
-
-
Gao, M.1
Craig, D.2
Lequin, O.3
Campbell, I.D.4
Vogel, V.5
Schulten, K.6
-
48
-
-
33749856031
-
Molecular mechanisms of cellular mechanics
-
Gao M., Sotomayor M., Villa E., Lee E., and Schulten K. Molecular mechanisms of cellular mechanics. Phys. Chem. Chem. Phys. 8 (2006) 3692-3706
-
(2006)
Phys. Chem. Chem. Phys.
, vol.8
, pp. 3692-3706
-
-
Gao, M.1
Sotomayor, M.2
Villa, E.3
Lee, E.4
Schulten, K.5
-
49
-
-
66149128872
-
Mechanical stability and differentially conserved physical-chemical properties of titin ig-domains
-
Garcia T.I., Oberhauser A.F., and Braun W. Mechanical stability and differentially conserved physical-chemical properties of titin ig-domains. Proteins 75 (2008) 706-718
-
(2008)
Proteins
, vol.75
, pp. 706-718
-
-
Garcia, T.I.1
Oberhauser, A.F.2
Braun, W.3
-
50
-
-
67649774600
-
Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin
-
Garcia-Manyes S., Dougan L., Badilla C.L., Brujic J., and Fernandez J. Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin. Proc. Natl. Acad. Sci. USA 106 (2009) 10534-10539
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 10534-10539
-
-
Garcia-Manyes, S.1
Dougan, L.2
Badilla, C.L.3
Brujic, J.4
Fernandez, J.5
-
51
-
-
67849109572
-
Force-activated reactivity switch in a bimolecular chemical reaction
-
Garcia-Manyes S., Liang J., Szoszkiewicz R., Kuo T.L., and Fernandez J. Force-activated reactivity switch in a bimolecular chemical reaction. Nat. Chemistry 1 (2009) 236-242
-
(2009)
Nat. Chemistry
, vol.1
, pp. 236-242
-
-
Garcia-Manyes, S.1
Liang, J.2
Szoszkiewicz, R.3
Kuo, T.L.4
Fernandez, J.5
-
52
-
-
42349109026
-
A primer on ankyrin repeat function in TRP channels and beyond
-
Gaudet R. A primer on ankyrin repeat function in TRP channels and beyond. Mol. Biosyst. 4 (2008) 372-379
-
(2008)
Mol. Biosyst.
, vol.4
, pp. 372-379
-
-
Gaudet, R.1
-
53
-
-
1242342244
-
The giant protein titin: a major player in myocardial mechanics, signaling, and disease
-
Granzier H.L., and Labeit S. The giant protein titin: a major player in myocardial mechanics, signaling, and disease. Circ. Res. 94 (2004) 284-295
-
(2004)
Circ. Res.
, vol.94
, pp. 284-295
-
-
Granzier, H.L.1
Labeit, S.2
-
54
-
-
18844398202
-
Mechanically induced titin kinase activation studied by force-probe molecular dynamics simulations
-
Gräter F., Shen J., Jiang H., Gautel M., and Grubmüller H. Mechanically induced titin kinase activation studied by force-probe molecular dynamics simulations. Biophys. J. 88 (2005) 790-804
-
(2005)
Biophys. J.
, vol.88
, pp. 790-804
-
-
Gräter, F.1
Shen, J.2
Jiang, H.3
Gautel, M.4
Grubmüller, H.5
-
55
-
-
21344467900
-
Force probe molecular dynamics simulations
-
Grubmüller H. Force probe molecular dynamics simulations. Methods Mol. Biol. 305 (2005) 493-515
-
(2005)
Methods Mol. Biol.
, vol.305
, pp. 493-515
-
-
Grubmüller, H.1
-
56
-
-
68849089514
-
Modulation of titin-based stiffness by disulfide bonding in cardiac titin n2-b unique sequence
-
Grutzner A., Garcia-Manyes S., Kotter S., Badilla C.L., and Fernandez J.M. Modulation of titin-based stiffness by disulfide bonding in cardiac titin n2-b unique sequence. Biophys. J. 97 (2009) 825-834
-
(2009)
Biophys. J.
, vol.97
, pp. 825-834
-
-
Grutzner, A.1
Garcia-Manyes, S.2
Kotter, S.3
Badilla, C.L.4
Fernandez, J.M.5
-
57
-
-
23144442645
-
Regulation of cadherin-mediated adhesion in morphogenesis
-
Gumbiner B.M. Regulation of cadherin-mediated adhesion in morphogenesis. Nat. Rev. Mol. Cell Biol. 6 (2005) 622-634
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 622-634
-
-
Gumbiner, B.M.1
-
58
-
-
56049083274
-
Effects of multiple-bond ruptures on kinetic parameters extracted from force spectroscopy measurements: revisiting biotin-streptavidin interactions
-
Guo S., Ray C., Kirkpatrick A., Lad N., and Akhremitchev B.B. Effects of multiple-bond ruptures on kinetic parameters extracted from force spectroscopy measurements: revisiting biotin-streptavidin interactions. Biophys. J. 95 (2008) 3964-3976
-
(2008)
Biophys. J.
, vol.95
, pp. 3964-3976
-
-
Guo, S.1
Ray, C.2
Kirkpatrick, A.3
Lad, N.4
Akhremitchev, B.B.5
-
59
-
-
1842535278
-
Hypothesis: a helix of ankyrin repeats of the NOMPC-TRP ion channel is the gating spring of mechanoreceptors
-
Howard J., and Bechstedt S. Hypothesis: a helix of ankyrin repeats of the NOMPC-TRP ion channel is the gating spring of mechanoreceptors. Curr. Biol. 14 (2004) R224-R226
-
(2004)
Curr. Biol.
, vol.14
-
-
Howard, J.1
Bechstedt, S.2
-
60
-
-
0038650860
-
Kinetics from nonequilibrium single-molecule pulling experiments
-
Hummer G., and Szabo A. Kinetics from nonequilibrium single-molecule pulling experiments. Biophys. J. 85 (2003) 5-15
-
(2003)
Biophys. J.
, vol.85
, pp. 5-15
-
-
Hummer, G.1
Szabo, A.2
-
62
-
-
0035003803
-
Steered molecular dynamics investigations of protein function
-
Isralewitz B., Baudry J., Gullingsrud J., Kosztin D., and Schulten K. Steered molecular dynamics investigations of protein function. J. Mol. Graph. Model. 19 (2001) 13-25
-
(2001)
J. Mol. Graph. Model.
, vol.19
, pp. 13-25
-
-
Isralewitz, B.1
Baudry, J.2
Gullingsrud, J.3
Kosztin, D.4
Schulten, K.5
-
63
-
-
0035312645
-
Steered molecular dynamics and mechanical functions of proteins
-
Isralewitz B., Gao M., and Schulten K. Steered molecular dynamics and mechanical functions of proteins. Curr. Opin. Struct. Biol. 11 (2001) 224-230
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 224-230
-
-
Isralewitz, B.1
Gao, M.2
Schulten, K.3
-
65
-
-
0030987036
-
Molecular dynamics study of unbinding of the avidin-biotin complex
-
Izrailev S., Stepaniants S., Balsera M., Oono Y., and Schulten K. Molecular dynamics study of unbinding of the avidin-biotin complex. Biophys. J. 72 (1997) 1568-1581
-
(1997)
Biophys. J.
, vol.72
, pp. 1568-1581
-
-
Izrailev, S.1
Stepaniants, S.2
Balsera, M.3
Oono, Y.4
Schulten, K.5
-
66
-
-
0032825183
-
Steered molecular dynamics simulation of the Rieske subunit motion in the cytochrome complex
-
Izrailev S., Crofts A.R., Berry E.A., and Schulten K. Steered molecular dynamics simulation of the Rieske subunit motion in the cytochrome complex. Biophys. J. 77 (1999) 1753-1768
-
(1999)
Biophys. J.
, vol.77
, pp. 1753-1768
-
-
Izrailev, S.1
Crofts, A.R.2
Berry, E.A.3
Schulten, K.4
-
67
-
-
0025048105
-
Molecular dynamics simulations in biology
-
Karplus M., and Petsko G.A. Molecular dynamics simulations in biology. Nature 347 (1990) 631-639
-
(1990)
Nature
, vol.347
, pp. 631-639
-
-
Karplus, M.1
Petsko, G.A.2
-
68
-
-
34548509448
-
Cadherin 23 and protocadherin 15 interact to form tip-link filaments in sensory hair cells
-
Kazmierczak P., Sakaguchi H., Tokita J., Wilson-Kubalek E.M., Milligan R.A., Müller U., and Kachar B. Cadherin 23 and protocadherin 15 interact to form tip-link filaments in sensory hair cells. Nature 449 (2007) 87-91
-
(2007)
Nature
, vol.449
, pp. 87-91
-
-
Kazmierczak, P.1
Sakaguchi, H.2
Tokita, J.3
Wilson-Kubalek, E.M.4
Milligan, R.A.5
Müller, U.6
Kachar, B.7
-
69
-
-
0031002460
-
Folding-unfolding transition in single titin modules characterized with laser tweezers
-
Kellermayer M.S., Smith S.B., Granzier H.L., and Bustamante C. Folding-unfolding transition in single titin modules characterized with laser tweezers. Science 276 (1997) 1112-1116
-
(1997)
Science
, vol.276
, pp. 1112-1116
-
-
Kellermayer, M.S.1
Smith, S.B.2
Granzier, H.L.3
Bustamante, C.4
-
70
-
-
49449114817
-
Large-scale molecular dynamics simulations of self-assembling systems
-
Klein M.L., and Shinoda W. Large-scale molecular dynamics simulations of self-assembling systems. Science 321 (2008) 798-800
-
(2008)
Science
, vol.321
, pp. 798-800
-
-
Klein, M.L.1
Shinoda, W.2
-
72
-
-
0028824480
-
Titins, giant proteins in charge of muscle ultrastructure and elasticity
-
Labeit S., and Kolmerer B. Titins, giant proteins in charge of muscle ultrastructure and elasticity. Science 270 (1995) 293-296
-
(1995)
Science
, vol.270
, pp. 293-296
-
-
Labeit, S.1
Kolmerer, B.2
-
73
-
-
33748195976
-
Mechanism and dynamics of cadherin adhesion
-
Leckband D., and Prakasam A. Mechanism and dynamics of cadherin adhesion. Annu. Rev. Biomed. Eng. 8 (2006) 259-287
-
(2006)
Annu. Rev. Biomed. Eng.
, vol.8
, pp. 259-287
-
-
Leckband, D.1
Prakasam, A.2
-
74
-
-
33644846751
-
Mechanical strength of the titin Z1Z2/telethonin complex
-
Lee E.H., Gao M., Pinotsis N., Wilmanns M., and Schulten K. Mechanical strength of the titin Z1Z2/telethonin complex. Structure 14 (2006) 497-509
-
(2006)
Structure
, vol.14
, pp. 497-509
-
-
Lee, E.H.1
Gao, M.2
Pinotsis, N.3
Wilmanns, M.4
Schulten, K.5
-
75
-
-
34548645722
-
Secondary and tertiary structure elasticity of titin Z1Z2 and a titin chain model
-
Lee E.H., Hsin J., Mayans O., and Schulten K. Secondary and tertiary structure elasticity of titin Z1Z2 and a titin chain model. Biophys. J. 93 (2007) 1719-1735
-
(2007)
Biophys. J.
, vol.93
, pp. 1719-1735
-
-
Lee, E.H.1
Hsin, J.2
Mayans, O.3
Schulten, K.4
-
76
-
-
33644849450
-
Nanospring behaviour of ankyrin repeats
-
Lee G., Abdi K., Jiang Y., Michaely P., Bennett V., and Marszalek P.E. Nanospring behaviour of ankyrin repeats. Nature 440 (2006) 246-249
-
(2006)
Nature
, vol.440
, pp. 246-249
-
-
Lee, G.1
Abdi, K.2
Jiang, Y.3
Michaely, P.4
Bennett, V.5
Marszalek, P.E.6
-
77
-
-
53849090669
-
'Mechanical Engineering' of elastomeric proteins: Toward designing new protein building blocks for biomaterials
-
Li H. 'Mechanical Engineering' of elastomeric proteins: Toward designing new protein building blocks for biomaterials. Adv. Funct. Mater. 18 (2008) 2643-2657
-
(2008)
Adv. Funct. Mater.
, vol.18
, pp. 2643-2657
-
-
Li, H.1
-
78
-
-
0142195769
-
Mechanical design of the first proximal Ig domain of human cardiac titin revealed by single molecule force spectroscopy
-
Li H., and Fernandez J.M. Mechanical design of the first proximal Ig domain of human cardiac titin revealed by single molecule force spectroscopy. J. Mol. Biol. 334 (2003) 75-86
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 75-86
-
-
Li, H.1
Fernandez, J.M.2
-
79
-
-
0033669185
-
Point mutations alter the mechanical stability of immunoglobulin modules
-
Li H., Carrion-Vazquez M., Oberhauser A.F., Marszalek P.E., and Fernandez J.M. Point mutations alter the mechanical stability of immunoglobulin modules. Nat. Struct. Biol. 7 (2001) 1117-1120
-
(2001)
Nat. Struct. Biol.
, vol.7
, pp. 1117-1120
-
-
Li, H.1
Carrion-Vazquez, M.2
Oberhauser, A.F.3
Marszalek, P.E.4
Fernandez, J.M.5
-
80
-
-
0037194788
-
Reverse engineering of the giant muscle protein titin
-
Li H., Linke W., Oberhauser A.F., Carrion-Vazquez M., Kerkvliet J.G., Lu H., Marszalek P.E., and Fernandez J.M. Reverse engineering of the giant muscle protein titin. Nature 418 (2002) 998-1002
-
(2002)
Nature
, vol.418
, pp. 998-1002
-
-
Li, H.1
Linke, W.2
Oberhauser, A.F.3
Carrion-Vazquez, M.4
Kerkvliet, J.G.5
Lu, H.6
Marszalek, P.E.7
Fernandez, J.M.8
-
81
-
-
33645770767
-
Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy
-
Li L., Wetzel S., Plückthun A., and Fernandez J.M. Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy. Biophys. J. 90 (2006) L30-L32
-
(2006)
Biophys. J.
, vol.90
-
-
Li, L.1
Wetzel, S.2
Plückthun, A.3
Fernandez, J.M.4
-
83
-
-
43149084573
-
Pulling single molecules of titin by AFM - recent advances and physiological implications
-
Linke W., and Grutzner A. Pulling single molecules of titin by AFM - recent advances and physiological implications. Eur. J. Phys. 456 (2008) 101-115
-
(2008)
Eur. J. Phys.
, vol.456
, pp. 101-115
-
-
Linke, W.1
Grutzner, A.2
-
84
-
-
0032493281
-
Nature of PEVK-titin elasticity in skeletal muscle
-
Linke W.A., Ivemeyer M., Mundel P., Stockmeier M.R., and Kolmerer B. Nature of PEVK-titin elasticity in skeletal muscle. Proc. Natl. Acad. Sci. USA 95 (1998) 8052-8057
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 8052-8057
-
-
Linke, W.A.1
Ivemeyer, M.2
Mundel, P.3
Stockmeier, M.R.4
Kolmerer, B.5
-
85
-
-
33746872559
-
Fibrin fibers have extraordinary extensibility and elasticity
-
Liu W., Jawerth L., Sparks E., Falvo M., Hantgan R., Superfine R., Lord S., and Guthold M. Fibrin fibers have extraordinary extensibility and elasticity. Science 313 (2006) 634
-
(2006)
Science
, vol.313
, pp. 634
-
-
Liu, W.1
Jawerth, L.2
Sparks, E.3
Falvo, M.4
Hantgan, R.5
Superfine, R.6
Lord, S.7
Guthold, M.8
-
86
-
-
0033151955
-
Steered molecular dynamics simulations of force-induced protein domain unfolding
-
Lu H., and Schulten K. Steered molecular dynamics simulations of force-induced protein domain unfolding. Proteins 35 (1999) 453-463
-
(1999)
Proteins
, vol.35
, pp. 453-463
-
-
Lu, H.1
Schulten, K.2
-
87
-
-
0033917135
-
The key event in force-induced unfolding of titin's immunoglobulin domains
-
Lu H., and Schulten K. The key event in force-induced unfolding of titin's immunoglobulin domains. Biophys. J. 79 (2000) 51-65
-
(2000)
Biophys. J.
, vol.79
, pp. 51-65
-
-
Lu, H.1
Schulten, K.2
-
88
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
-
Lu H., Isralewitz B., Krammer A., Vogel V., and Schulten K. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys. J. 75 (1998) 662-671
-
(1998)
Biophys. J.
, vol.75
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
89
-
-
0035957219
-
Polyproline II helix is a key structural motif of the elastic PEVK segment of titin
-
Ma K., Kan L.S., and Wang K. Polyproline II helix is a key structural motif of the elastic PEVK segment of titin. Biochemistry 40 (2001) 3427-3438
-
(2001)
Biochemistry
, vol.40
, pp. 3427-3438
-
-
Ma, K.1
Kan, L.S.2
Wang, K.3
-
91
-
-
4444351490
-
Empirical force fields for biological macromolecules: overview and issues
-
Mackerell A.D. Empirical force fields for biological macromolecules: overview and issues. J. Comput. Chem. 25 (2004) 1584-1604
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1584-1604
-
-
Mackerell, A.D.1
-
92
-
-
44949111351
-
Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins
-
Maragakis P., Lindorff-Larson K., Eastwood M.P., Dror R.O., Klepeis J.L., Arkin I.T., Jensen M., Xu H., Trbovic N., Freisner R.A., et al. Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins. J. Phys. Chem. B 112 (2008) 6155-6158
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6155-6158
-
-
Maragakis, P.1
Lindorff-Larson, K.2
Eastwood, M.P.3
Dror, R.O.4
Klepeis, J.L.5
Arkin, I.T.6
Jensen, M.7
Xu, H.8
Trbovic, N.9
Freisner, R.A.10
-
93
-
-
0033523904
-
Mechanical unfolding intermediates in titin modules
-
Marszalek P.E., Lu H., Li H., Carrion-Vazquez M., Oberhauser A.F., Schulten K., and Fernandez J.M. Mechanical unfolding intermediates in titin modules. Nature 402 (1999) 100-103
-
(1999)
Nature
, vol.402
, pp. 100-103
-
-
Marszalek, P.E.1
Lu, H.2
Li, H.3
Carrion-Vazquez, M.4
Oberhauser, A.F.5
Schulten, K.6
Fernandez, J.M.7
-
94
-
-
0037011104
-
Crystal structure of a 12 ANK repeat stack from human ankyrinR
-
Michaely P., Tomchick D.R., Machius M., and Anderson R.G.W. Crystal structure of a 12 ANK repeat stack from human ankyrinR. EMBO J. 21 (2002) 6387-6396
-
(2002)
EMBO J.
, vol.21
, pp. 6387-6396
-
-
Michaely, P.1
Tomchick, D.R.2
Machius, M.3
Anderson, R.G.W.4
-
95
-
-
18744380008
-
Consensus-derived structural determinants of the ankyrin repeat motif
-
Mosavi L.K., Minor D.L., and Peng Z. Consensus-derived structural determinants of the ankyrin repeat motif. Proc. Natl. Acad. Sci. USA 99 (2002) 16029-16034
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16029-16034
-
-
Mosavi, L.K.1
Minor, D.L.2
Peng, Z.3
-
97
-
-
33751223863
-
Examining the influence of linkers and tertiary structure in the forced unfolding of multiple-repeat spectrin molecules
-
Paramore S., and Voth G.A. Examining the influence of linkers and tertiary structure in the forced unfolding of multiple-repeat spectrin molecules. Biophys. J. 91 (2006) 3436-3445
-
(2006)
Biophys. J.
, vol.91
, pp. 3436-3445
-
-
Paramore, S.1
Voth, G.A.2
-
98
-
-
4143087050
-
Calculating potentials of mean force from steered molecular dynamics simulations
-
Park S., and Schulten K. Calculating potentials of mean force from steered molecular dynamics simulations. J. Chem. Phys. 120 (2004) 5946-5961
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 5946-5961
-
-
Park, S.1
Schulten, K.2
-
99
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips J.C., Braun R., Wang W., Gumbart J., Tajkhorshid E., Villa E., Chipot C., Skeel R.D., Kale L., and Schulten K. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26 (2005) 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
100
-
-
0028093281
-
Conformational changes of the recombinant extracellular domain of E-cadherin upon calcium binding
-
Pokutta S., Herrenknecht K., Kemler R., and Engel J. Conformational changes of the recombinant extracellular domain of E-cadherin upon calcium binding. Eur. J. Biochem. 223 (1994) 1019-1026
-
(1994)
Eur. J. Biochem.
, vol.223
, pp. 1019-1026
-
-
Pokutta, S.1
Herrenknecht, K.2
Kemler, R.3
Engel, J.4
-
101
-
-
67650034563
-
Deforming DNA: from physics to biology
-
Prevost C., Takahashi M., and Lavery R. Deforming DNA: from physics to biology. ChemPhysChem 10 (2009) 1399-1404
-
(2009)
ChemPhysChem
, vol.10
, pp. 1399-1404
-
-
Prevost, C.1
Takahashi, M.2
Lavery, R.3
-
102
-
-
51649101588
-
Mechanoenzymatics of titin kinase
-
Puchner E.M., Alexandrovich A., Koh A., Hensen U., Schäfer L.V., Brandmeier B., Gräter F., Grubmüller H., Gaub H.E., and Gautel M. Mechanoenzymatics of titin kinase. Proc. Natl. Acad. Sci. USA 105 (2008) 13385-13390
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 13385-13390
-
-
Puchner, E.M.1
Alexandrovich, A.2
Koh, A.3
Hensen, U.4
Schäfer, L.V.5
Brandmeier, B.6
Gräter, F.7
Grubmüller, H.8
Gaub, H.E.9
Gautel, M.10
-
103
-
-
0037066262
-
Force spectroscopy of single biomolecules
-
Rief M., and Grubmüller H. Force spectroscopy of single biomolecules. ChemPhysChem 3 (2002) 255-261
-
(2002)
ChemPhysChem
, vol.3
, pp. 255-261
-
-
Rief, M.1
Grubmüller, H.2
-
104
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
Rief M., Gautel M., Oesterhelt F., Fernandez J.M., and Gaub H.E. Reversible unfolding of individual titin immunoglobulin domains by AFM. Science 276 (1997) 1109-1112
-
(1997)
Science
, vol.276
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Oesterhelt, F.3
Fernandez, J.M.4
Gaub, H.E.5
-
105
-
-
0033582763
-
Single molecule force spectroscopy of spectrin repeats: Low unfolding forces in helix bundles
-
Rief M., Pascual J., Saraste M., and Gaub H. Single molecule force spectroscopy of spectrin repeats: Low unfolding forces in helix bundles. J. Mol. Biol. 286 (1999) 553-561
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 553-561
-
-
Rief, M.1
Pascual, J.2
Saraste, M.3
Gaub, H.4
-
106
-
-
0033776856
-
Macromolecular structure determination by cryo-electron microscopy
-
Saibil H.R. Macromolecular structure determination by cryo-electron microscopy. Acta Crystallogr. D Biol. Crystallogr. 56 (2000) 1215-1222
-
(2000)
Acta Crystallogr. D Biol. Crystallogr.
, vol.56
, pp. 1215-1222
-
-
Saibil, H.R.1
-
107
-
-
33847175935
-
High performance computing in biology: multimillion atom simulations of nanoscale systems
-
Sanbonmatsu K.Y., and Tung C.S. High performance computing in biology: multimillion atom simulations of nanoscale systems. J. Struct. Biol. 157 (2007) 470-480
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 470-480
-
-
Sanbonmatsu, K.Y.1
Tung, C.S.2
-
108
-
-
2442448427
-
The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques
-
Schlierf M., Li H., and Fernandez J.M. The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques. Proc. Natl. Acad. Sci. USA 101 (2004) 7299-7304
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7299-7304
-
-
Schlierf, M.1
Li, H.2
Fernandez, J.M.3
-
109
-
-
51049102261
-
Biomolecular modeling in the era of petascale computing
-
Bader D. (Ed), Chapman and Hall/CRC Press, Taylor and Francis Group, New York
-
Schulten K., Phillips J.C., Kalé L.V., and Bhatele A. Biomolecular modeling in the era of petascale computing. In: Bader D. (Ed). Petascale Computing: Algorithms and Applications (2008), Chapman and Hall/CRC Press, Taylor and Francis Group, New York 165-181
-
(2008)
Petascale Computing: Algorithms and Applications
, pp. 165-181
-
-
Schulten, K.1
Phillips, J.C.2
Kalé, L.V.3
Bhatele, A.4
-
110
-
-
0028986780
-
Structural basis of cell-cell adhesion by cadherins
-
Shapiro L., Fannon A.M., Kwong P.D., Thompson A., Lehmann M.S., Grübel G., Legrand J.F., Als-Nielsen J., Colman D.R., and Hendrickson W.A. Structural basis of cell-cell adhesion by cadherins. Nature 374 (1995) 327-336
-
(1995)
Nature
, vol.374
, pp. 327-336
-
-
Shapiro, L.1
Fannon, A.M.2
Kwong, P.D.3
Thompson, A.4
Lehmann, M.S.5
Grübel, G.6
Legrand, J.F.7
Als-Nielsen, J.8
Colman, D.R.9
Hendrickson, W.A.10
-
111
-
-
0029164589
-
Consideration on the folding topology and evolutionary origin of cadherin domains
-
Shapiro L., Kwong P.D., Fannon A.M., Colman D.R., and Hendrickson W.A. Consideration on the folding topology and evolutionary origin of cadherin domains. Proc. Natl. Acad. Sci. USA 92 (1995) 6793-6797
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 6793-6797
-
-
Shapiro, L.1
Kwong, P.D.2
Fannon, A.M.3
Colman, D.R.4
Hendrickson, W.A.5
-
112
-
-
3843113235
-
Gating transitions in bacterial ion channels measured at 3 μs resolution
-
Shapovalov G., and Lester H.A. Gating transitions in bacterial ion channels measured at 3 μs resolution. J. Gen. Physiol. 124 (2004) 151-161
-
(2004)
J. Gen. Physiol.
, vol.124
, pp. 151-161
-
-
Shapovalov, G.1
Lester, H.A.2
-
113
-
-
33644893631
-
Coarse grained protein-lipid model with application to lipoprotein particles
-
Shih A.Y., Arkhipov A., Freddolino P.L., and Schulten K. Coarse grained protein-lipid model with application to lipoprotein particles. J. Phys. Chem. B 110 (2006) 3674-3684
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 3674-3684
-
-
Shih, A.Y.1
Arkhipov, A.2
Freddolino, P.L.3
Schulten, K.4
-
114
-
-
0030024985
-
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith S.B., Cui Y., and Bustamante C. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science 271 (1996) 795-799
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
116
-
-
34249930159
-
Single-molecule experiments in vitro and in silico
-
Sotomayor M., and Schulten K. Single-molecule experiments in vitro and in silico. Science 316 (2007) 1144-1148
-
(2007)
Science
, vol.316
, pp. 1144-1148
-
-
Sotomayor, M.1
Schulten, K.2
-
117
-
-
45849137475
-
The allosteric role of the Ca switch in adhesion and elasticity of C-cadherin
-
Sotomayor M., and Schulten K. The allosteric role of the Ca switch in adhesion and elasticity of C-cadherin. Biophys. J. 94 (2008) 4621-4633
-
(2008)
Biophys. J.
, vol.94
, pp. 4621-4633
-
-
Sotomayor, M.1
Schulten, K.2
-
118
-
-
17044401714
-
In search of the hair-cell gating spring: elastic properties of ankyrin and cadherin repeats
-
Sotomayor M., Corey D.P., and Schulten K. In search of the hair-cell gating spring: elastic properties of ankyrin and cadherin repeats. Structure 13 (2005) 669-682
-
(2005)
Structure
, vol.13
, pp. 669-682
-
-
Sotomayor, M.1
Corey, D.P.2
Schulten, K.3
-
119
-
-
2142803260
-
Mechanosensitive channels: multiplicity of families and gating paradigms
-
Sukharev S., and Corey D.P. Mechanosensitive channels: multiplicity of families and gating paradigms. Sci. STKE 2004 (2004) re4
-
(2004)
Sci. STKE
, vol.2004
-
-
Sukharev, S.1
Corey, D.P.2
-
120
-
-
0027453868
-
Direct observation of kinesin stepping by optical trapping interferometry
-
Svoboda K., Schmidt C., Schnapp B., and Block S. Direct observation of kinesin stepping by optical trapping interferometry. Nature 365 (1993) 721-727
-
(1993)
Nature
, vol.365
, pp. 721-727
-
-
Svoboda, K.1
Schmidt, C.2
Schnapp, B.3
Block, S.4
-
121
-
-
0025325167
-
Cadherins: a molecular family important in selective cell-cell adhesion
-
Takeichi M. Cadherins: a molecular family important in selective cell-cell adhesion. Annu. Rev. Biochem. 59 (1990) 237-252
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 237-252
-
-
Takeichi, M.1
-
122
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco L.G., Villa E., Mitra K., Frank J., and Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16 (2008) 673-683
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
124
-
-
59049096394
-
Ribosome-induced changes in EF-Tu conformation control GTP hydrolysis
-
Villa E., Sengupta J., Trabuco L.G., LeBarron J., Baxter W.T., Shaikh T.R., Grassucci R.A., Nissen P., Ehrenberg M., Schulten K., et al. Ribosome-induced changes in EF-Tu conformation control GTP hydrolysis. Proc. Natl. Acad. Sci. USA 106 (2009) 1063-1068
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 1063-1068
-
-
Villa, E.1
Sengupta, J.2
Trabuco, L.G.3
LeBarron, J.4
Baxter, W.T.5
Shaikh, T.R.6
Grassucci, R.A.7
Nissen, P.8
Ehrenberg, M.9
Schulten, K.10
-
125
-
-
9644260704
-
The mechanical properties of fibrin for basic scientists and clinicians
-
Weisel J.W. The mechanical properties of fibrin for basic scientists and clinicians. Biophys. Chem. 112 (2004) 267-276
-
(2004)
Biophys. Chem.
, vol.112
, pp. 267-276
-
-
Weisel, J.W.1
-
126
-
-
17444392120
-
Fibrinogen and fibrin
-
Weisel J.W. Fibrinogen and fibrin. Adv. Protein Chem. 70 (2005) 247-299
-
(2005)
Adv. Protein Chem.
, vol.70
, pp. 247-299
-
-
Weisel, J.W.1
-
127
-
-
0037468835
-
Hidden complexity in the mechanical properties of titin
-
Williams P.M., Fowler S.B., Best R.B., Toca-Herrera J.L., Scott K.A., Steward A., and Clarke J. Hidden complexity in the mechanical properties of titin. Nature 422 (2003) 446-449
-
(2003)
Nature
, vol.422
, pp. 446-449
-
-
Williams, P.M.1
Fowler, S.B.2
Best, R.B.3
Toca-Herrera, J.L.4
Scott, K.A.5
Steward, A.6
Clarke, J.7
-
128
-
-
0035940439
-
Crystal structure of native chicken fibrinogen at 2.7 å resolution
-
Yang Z., Kollman J.M., Pandi L., and Doolittle R.F. Crystal structure of native chicken fibrinogen at 2.7 å resolution. Biochemistry 40 (2001) 12515-12523
-
(2001)
Biochemistry
, vol.40
, pp. 12515-12523
-
-
Yang, Z.1
Kollman, J.M.2
Pandi, L.3
Doolittle, R.F.4
-
129
-
-
66349103875
-
Simulations of membrane tubulation by lattices of amphiphysin N-BAR domains
-
in press
-
Yin Y., Arkhipov A., and Schulten K. Simulations of membrane tubulation by lattices of amphiphysin N-BAR domains. Structure (2009) in press
-
(2009)
Structure
-
-
Yin, Y.1
Arkhipov, A.2
Schulten, K.3
-
130
-
-
33748305808
-
A highly strained nuclear conformation of the exportin Cse1p revealed by molecular dynamics simulations
-
Zachariae U., and Grubmüller H. A highly strained nuclear conformation of the exportin Cse1p revealed by molecular dynamics simulations. Structure 14 (2006) 1469-1478
-
(2006)
Structure
, vol.14
, pp. 1469-1478
-
-
Zachariae, U.1
Grubmüller, H.2
-
131
-
-
44649192390
-
Importin-beta: structural and dynamic determinants of a moleculer spring
-
Zachariae U., and Grubmüller H. Importin-beta: structural and dynamic determinants of a moleculer spring. Structure 16 (2008) 906-915
-
(2008)
Structure
, vol.16
, pp. 906-915
-
-
Zachariae, U.1
Grubmüller, H.2
-
132
-
-
62649155309
-
Mechanical properties of the icosahedral shell of southern bean mosaic virus: a molecular dynamics study
-
Zink M., and Grubmüller H. Mechanical properties of the icosahedral shell of southern bean mosaic virus: a molecular dynamics study. Biophys. J. 96 (2009) 1350-1363
-
(2009)
Biophys. J.
, vol.96
, pp. 1350-1363
-
-
Zink, M.1
Grubmüller, H.2
-
133
-
-
33750463365
-
Single-molecule biology: what is it and how does it work?
-
Zlatanova J., and van Holde K. Single-molecule biology: what is it and how does it work?. Mol. Cell 24 (2006) 317-329
-
(2006)
Mol. Cell
, vol.24
, pp. 317-329
-
-
Zlatanova, J.1
van Holde, K.2
|