-
1
-
-
0003769049
-
-
The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University
-
Brünger, A. T. 1992. X-PLOR, Version 3.1: A System for X-Ray Crystallography and NMR. The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University.
-
(1992)
X-PLOR, Version 3.1: A System for X-ray Crystallography and NMR
-
-
Brünger, A.T.1
-
2
-
-
0034081255
-
Mechanical unfolding of a β-hairpin using molecular dynamics
-
Bryant, Z., V. Pande, and D. Rokhsar. 2000. Mechanical unfolding of a β-hairpin using molecular dynamics. Biophys. J. 78:584-589.
-
(2000)
Biophys. J.
, vol.78
, pp. 584-589
-
-
Bryant, Z.1
Pande, V.2
Rokhsar, D.3
-
3
-
-
0033613249
-
Atomic force microscopy captures length phenotypes in single proteins
-
Carrion-Vazquez, M., P. Marszalek, A. Oberhauser, and J. Fernandez. 1999a. Atomic force microscopy captures length phenotypes in single proteins. Proc. Natl. Acad. Sci. USA. 96:11288-11292.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11288-11292
-
-
Carrion-Vazquez, M.1
Marszalek, P.2
Oberhauser, A.3
Fernandez, J.4
-
4
-
-
0033616713
-
Mechanical and chemical unfolding of a single protein: A comparison
-
Carrion-Vazquez, M., A. Oberhauser, S. Fowler, P. Marszalek, S. Broedel, J. Clarke, and J. Fernandez. 1999b. Mechanical and chemical unfolding of a single protein: a comparison. Proc. Natl. Acad. Sci. USA. 96: 3694-3699.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3694-3699
-
-
Carrion-Vazquez, M.1
Oberhauser, A.2
Fowler, S.3
Marszalek, P.4
Broedel, S.5
Clarke, J.6
Fernandez, J.7
-
5
-
-
0033200251
-
Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathway
-
Clark, J., E. Cota, S. Fowler, and S. Hamill. 1999. Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathway. Structure. 7:1145-1153.
-
(1999)
Structure
, vol.7
, pp. 1145-1153
-
-
Clark, J.1
Cota, E.2
Fowler, S.3
Hamill, S.4
-
6
-
-
0028028999
-
Reversible unfolding of fibronectin type III and immunoglobulin domains provides the structural basis for stretch and elasticity of titin and fibronectin
-
Erickson, H. 1994. Reversible unfolding of fibronectin type III and immunoglobulin domains provides the structural basis for stretch and elasticity of titin and fibronectin. Proc. Natl. Acad. Sci. USA. 91:10114-10118.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 10114-10118
-
-
Erickson, H.1
-
7
-
-
0032988663
-
Strength of a weak bond connecting flexible polymer chains
-
Evans, E., and K. Ritchie. 1999. Strength of a weak bond connecting flexible polymer chains. Biophys. J. 76:2439-2447.
-
(1999)
Biophys. J.
, vol.76
, pp. 2439-2447
-
-
Evans, E.1
Ritchie, K.2
-
8
-
-
0030048904
-
Nonuniform elasticity of titin in cardiac myocytes: A study using immunoelectron microscopy and cellular mechanics
-
Granzier, H., M. Helmes, and K. Trombitas. 1996. Nonuniform elasticity of titin in cardiac myocytes: a study using immunoelectron microscopy and cellular mechanics. Biophys. J. 70:430-442.
-
(1996)
Biophys. J.
, vol.70
, pp. 430-442
-
-
Granzier, H.1
Helmes, M.2
Trombitas, K.3
-
9
-
-
0029827328
-
CDNA sequence of rabbit cardiac titin/connectin
-
Greaser, M., M. Sebestyen, J. Fritz, and J. Wolff. 1996. CDNA sequence of rabbit cardiac titin/connectin. Adv. Biophys. 33:13-25.
-
(1996)
Adv. Biophys.
, vol.33
, pp. 13-25
-
-
Greaser, M.1
Sebestyen, M.2
Fritz, J.3
Wolff, J.4
-
10
-
-
0030059225
-
Ligand binding and molecular mechanics calculation of the streptavidin-biotin rupture force
-
Grubmüller, H., B. Heymann, and P. Tavan. 1996. Ligand binding and molecular mechanics calculation of the streptavidin-biotin rupture force. Science. 271:997-999.
-
(1996)
Science
, vol.271
, pp. 997-999
-
-
Grubmüller, H.1
Heymann, B.2
Tavan, P.3
-
11
-
-
0042852135
-
Reconstructing potentials of mean force through time series analysis of steered molecular dynamics simulations
-
Gullingsrud, J., R. Braun, and K. Schulten. 1999. Reconstructing potentials of mean force through time series analysis of steered molecular dynamics simulations. J. Comp. Phys. 151:190-211.
-
(1999)
J. Comp. Phys.
, vol.151
, pp. 190-211
-
-
Gullingsrud, J.1
Braun, R.2
Schulten, K.3
-
12
-
-
0033546073
-
Mechanically driven contour length adjustment in rat cardiac titin's unique n2b squence
-
Helmes, M., K. Trombitas, T. Centner, M. Kellermayer, S. Labeit, W. Linke, and H. Granzier. 1999. Mechanically driven contour length adjustment in rat cardiac titin's unique n2b squence. Circ. Res. 84: 1339-1352.
-
(1999)
Circ. Res.
, vol.84
, pp. 1339-1352
-
-
Helmes, M.1
Trombitas, K.2
Centner, T.3
Kellermayer, M.4
Labeit, S.5
Linke, W.6
Granzier, H.7
-
14
-
-
0004043397
-
-
Springer-Verlag, New York
-
Hynes, R. 1990. Fibronectins. Springer-Verlag, New York.
-
(1990)
Fibronectins
-
-
Hynes, R.1
-
15
-
-
0030834853
-
Binding pathway of retinal to bacterio-opsin: A prediction by molecular dynamics simulations
-
Isralewitz, B., S. Izrailev, and K. Schulten. 1997. Binding pathway of retinal to bacterio-opsin: a prediction by molecular dynamics simulations. Biophys. J. 73:2972-2979.
-
(1997)
Biophys. J.
, vol.73
, pp. 2972-2979
-
-
Isralewitz, B.1
Izrailev, S.2
Schulten, K.3
-
16
-
-
0030987036
-
Molecular dynamics study of unbinding of the avidin-biotin complex
-
Izrailev, S., S. Stepaniants, M. Balsera, Y. Oono, and K. Schulten. 1997. Molecular dynamics study of unbinding of the avidin-biotin complex. Biophys. J. 72:1568-1581.
-
(1997)
Biophys. J.
, vol.72
, pp. 1568-1581
-
-
Izrailev, S.1
Stepaniants, S.2
Balsera, M.3
Oono, Y.4
Schulten, K.5
-
17
-
-
0002174423
-
Steered molecular dynamics
-
P. Deuflhard, J. Hermans, B. Leimkuhler, A. E. Mark, S. Reich, and R. D. Skeel, editors. Springer-Verlag, Berlin
-
Izrailev, S., S. Stepaniants, B. Isralewitz, D. Kosztin, H. Lu, F. Molnar, W. Wriggers, and K. Schulten. 1998. Steered molecular dynamics. In Computational Molecular Dynamics: Challenges, Methods, Ideas, Lecture Notes in Computational Science and Engineering, Vol. 4. P. Deuflhard, J. Hermans, B. Leimkuhler, A. E. Mark, S. Reich, and R. D. Skeel, editors. Springer-Verlag, Berlin. 39-65.
-
(1998)
Computational Molecular Dynamics: Challenges, Methods, Ideas, Lecture Notes in Computational Science and Engineering
, vol.4
, pp. 39-65
-
-
Izrailev, S.1
Stepaniants, S.2
Isralewitz, B.3
Kosztin, D.4
Lu, H.5
Molnar, F.6
Wriggers, W.7
Schulten, K.8
-
18
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
19
-
-
0029886571
-
Elastic properties of single titin molecules made visible through fluorescent F-actin binding
-
Kellermayer, M., and H. Granzier. 1996. Elastic properties of single titin molecules made visible through fluorescent F-actin binding. Biochem. Biophys. Res. Commun. 221:491-497.
-
(1996)
Biochem. Biophys. Res. Commun.
, vol.221
, pp. 491-497
-
-
Kellermayer, M.1
Granzier, H.2
-
20
-
-
0031002460
-
Folding-unfolding transition in single titin modules characterized with laser tweezers
-
Kellermayer, M., S. Smith, H. Granzier, and C. Bustamante. 1997. Folding-unfolding transition in single titin modules characterized with laser tweezers. Science. 276:1112-1116.
-
(1997)
Science.
, vol.276
, pp. 1112-1116
-
-
Kellermayer, M.1
Smith, S.2
Granzier, H.3
Bustamante, C.4
-
21
-
-
0032906662
-
Unbinding of retinoic acid from its receptor studied by steered molecular dynamics
-
Kosztin, D., S. Izrailev, and K. Schulten. 1999. Unbinding of retinoic acid from its receptor studied by steered molecular dynamics. Biophys. J. 76:188-197.
-
(1999)
Biophys. J.
, vol.76
, pp. 188-197
-
-
Kosztin, D.1
Izrailev, S.2
Schulten, K.3
-
22
-
-
0033573912
-
Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch
-
Krammer, A., H. Lu, B. Isralewitz, K. Schulten, and V. Vogel. 1999. Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch. Proc. Natl. Acad Sci. USA. 96:1351-1356.
-
(1999)
Proc. Natl. Acad Sci. USA
, vol.96
, pp. 1351-1356
-
-
Krammer, A.1
Lu, H.2
Isralewitz, B.3
Schulten, K.4
Vogel, V.5
-
23
-
-
0028824480
-
Titins, giant proteins in charge of muscle ultrastructure and elasticity
-
Labeit, S., and B. Kolmerer. 1995. Titins, giant proteins in charge of muscle ultrastructure and elasticity. Science. 270:293-296.
-
(1995)
Science
, vol.270
, pp. 293-296
-
-
Labeit, S.1
Kolmerer, B.2
-
24
-
-
0031016596
-
The giant protein titin: Emerging roles in physiology and pathophysiology
-
Labeit, S., B. Kolmerer, and W. Linke. 1997. The giant protein titin: emerging roles in physiology and pathophysiology. Circulation Research 80: 290-294.
-
(1997)
Circulation Research
, vol.80
, pp. 290-294
-
-
Labeit, S.1
Kolmerer, B.2
Linke, W.3
-
25
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
-
Lu, H., B. Isralewitz, A. Krammer, V. Vogel, and K. Schulten. 1998. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys. J. 75:662-671.
-
(1998)
Biophys. J.
, vol.75
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
26
-
-
0033151955
-
Steered molecular dynamics simulations of force-induced protein domain unfolding
-
Lu, H., and K. Schulten. 1999a. Steered molecular dynamics simulations of force-induced protein domain unfolding. PROTEINS: Struct., Funct., Genet. 35:453-463.
-
(1999)
PROTEINS: Struct., Funct., Genet.
, vol.35
, pp. 453-463
-
-
Lu, H.1
Schulten, K.2
-
27
-
-
0033445338
-
Steered molecular dynamics simulation of conformational changes of immunoglobulin domain 127 interpret atomic force microscopy observations
-
Lu, H., and K. Schulten. 1999b. Steered molecular dynamics simulation of conformational changes of immunoglobulin domain 127 interpret atomic force microscopy observations. Chem. Phys. 247:141-153
-
(1999)
Chem. Phys.
, vol.247
, pp. 141-153
-
-
Lu, H.1
Schulten, K.2
-
28
-
-
0032550178
-
Human autoantibodies reveal titin as a chromosomal protein
-
Machado, C., C. Sunkel, and D. Andrew. 1998. Human autoantibodies reveal titin as a chromosomal protein. J. Cell Biol. 141:321-333.
-
(1998)
J. Cell Biol.
, vol.141
, pp. 321-333
-
-
Machado, C.1
Sunkel, C.2
Andrew, D.3
-
29
-
-
0041784950
-
All-hydrogen empirical potential for molecular modeling and dynamics studies of proteins using the CHARMM22 force field
-
MacKerell, Jr., A. D., D. Bashford, M. Bellott, R. L. Dunbrack, Jr., J. Evanseck, M. J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, T. Ngo, D. T. Nguyen, B. Prodhom, I. W. E. Reiher, B. Roux, M. Schlenkrich, J. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus. 1998. All-hydrogen empirical potential for molecular modeling and dynamics studies of proteins using the CHARMM22 force field. J. Phys. Chem. B. 102:3586-3616.
-
(1998)
J. Phys. Chem. B.
, vol.102
, pp. 3586-3616
-
-
MacKerell A.D., Jr.1
Bashford, D.2
Bellott, M.3
Dunbrack R.L., Jr.4
Evanseck, J.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, I.W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
30
-
-
0033523904
-
Mechanical unfolding intermediates in titin modules
-
Marszalek, P. E., H. Lu, H. Li, M. Carrion-Vazquez, A. F. Oberhauser, K. Schulten, and J. M. Fernandez. 1999. Mechanical unfolding intermediates in titin modules. Nature. 402:100-103.
-
(1999)
Nature
, vol.402
, pp. 100-103
-
-
Marszalek, P.E.1
Lu, H.2
Li, H.3
Carrion-Vazquez, M.4
Oberhauser, A.F.5
Schulten, K.6
Fernandez, J.M.7
-
31
-
-
0030982846
-
Connectin/titin, a giant elastic protein of muscle
-
Maruyama, K. 1997. Connectin/titin, a giant elastic protein of muscle. FASEB J. 11:341-345.
-
(1997)
FASEB J.
, vol.11
, pp. 341-345
-
-
Maruyama, K.1
-
32
-
-
0029980542
-
Structural basis of calcium-induced E-cadherin rigidification and dimerization
-
Nagar, B., M. Overdulin, M. Ikura, and J. Rini. 1996. Structural basis of calcium-induced E-cadherin rigidification and dimerization. Nature. 380:360-364.
-
(1996)
Nature
, vol.380
, pp. 360-364
-
-
Nagar, B.1
Overdulin, M.2
Ikura, M.3
Rini, J.4
-
33
-
-
8344276781
-
NAMD - A parallel, object-oriented molecular dynamics program
-
Nelson, M., W. Humphrey, A. Gursoy, A. Dalke, L. Kalé, R. D. Skeel, and K. Schulten. 1996. NAMD - a parallel, object-oriented molecular dynamics program. Int. J. Supercomput. Appl. High Perform. Comput. 10:251-268.
-
(1996)
Int. J. Supercomput. Appl. High Perform. Comput.
, vol.10
, pp. 251-268
-
-
Nelson, M.1
Humphrey, W.2
Gursoy, A.3
Dalke, A.4
Kalé, L.5
Skeel, R.D.6
Schulten, K.7
-
34
-
-
0032516205
-
The molecular elasticity of tenascin, an extracellular matrix protein
-
Oberhauser, A. F., P. E. Marszalek, H. Erickson, and J. Fernandez. 1998. The molecular elasticity of tenascin, an extracellular matrix protein. Nature. 393:181-185.
-
(1998)
Nature
, vol.393
, pp. 181-185
-
-
Oberhauser, A.F.1
Marszalek, P.E.2
Erickson, H.3
Fernandez, J.4
-
35
-
-
0033531973
-
Forced unfolding of fibronectin type 3 modules: An analysis by biased molecular dynamics simulations
-
Paci, E., and M. Karplus. 1999. Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations. J. Mol. Biol. 288:441-459.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 441-459
-
-
Paci, E.1
Karplus, M.2
-
36
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
Rief, M., M. Gautel, F. Oesterhelt, J. M. Fernandez, and H. E. Gaub. 1997. Reversible unfolding of individual titin immunoglobulin domains by AFM. Science. 276:1109-1112.
-
(1997)
Science
, vol.276
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Oesterhelt, F.3
Fernandez, J.M.4
Gaub, H.E.5
-
37
-
-
0031767965
-
The mechanical stability of immunoglobulin and fibronectin III domains in the muscle protein titin measured by afm
-
Rief, M., M. Gautel, A. Schemmel, and H. Gaub. 1998. The mechanical stability of immunoglobulin and fibronectin III domains in the muscle protein titin measured by afm. Biophys. J. 75:3008-3014.
-
(1998)
Biophys. J.
, vol.75
, pp. 3008-3014
-
-
Rief, M.1
Gautel, M.2
Schemmel, A.3
Gaub, H.4
-
38
-
-
0033582763
-
Single molecule force spectroscopy of spectrin repeats: Low unfolding forces in helix bundles
-
Rief, M., J. Pascual, M. Saraste, and H. Gaub. 1999. Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles. J. Mol. Biol. 286:553-561.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 553-561
-
-
Rief, M.1
Pascual, J.2
Saraste, M.3
Gaub, H.4
-
39
-
-
0033064934
-
Unraveling proteins: A molecular mechanics study
-
Rohs, R., C. Etchebest, and R. Lavery. 1999. Unraveling proteins: a molecular mechanics study. Biophys. J. 76:2760-2768.
-
(1999)
Biophys. J.
, vol.76
, pp. 2760-2768
-
-
Rohs, R.1
Etchebest, C.2
Lavery, R.3
-
40
-
-
0001069331
-
Dynamics of reactions involving diffusive barrier crossing
-
Schulten, K., Z. Schulten, and A. Szabo. 1981. Dynamics of reactions involving diffusive barrier crossing. J. Chem. Phys. 74:4426-4432.
-
(1981)
J. Chem. Phys.
, vol.74
, pp. 4426-4432
-
-
Schulten, K.1
Schulten, Z.2
Szabo, A.3
-
42
-
-
0031006659
-
Elasticity and unfolding of single molecules of the giant protein titin
-
Tskhovrebova, L., J. Trinick, J. Sleep, and R. Simmons. 1997. Elasticity and unfolding of single molecules of the giant protein titin. Nature. 387:308-312
-
(1997)
Nature
, vol.387
, pp. 308-312
-
-
Tskhovrebova, L.1
Trinick, J.2
Sleep, J.3
Simmons, R.4
-
43
-
-
0027189534
-
Viscoelasticity of the sarcomere matrix of skeletal muscles
-
Wang, K., R. McCarter, J. Wright, J. Beverly, and R. Ramirez-Mitchell. 1993. Viscoelasticity of the sarcomere matrix of skeletal muscles. Biophys. J. 64:1161-1177.
-
(1993)
Biophys. J.
, vol.64
, pp. 1161-1177
-
-
Wang, K.1
McCarter, R.2
Wright, J.3
Beverly, J.4
Ramirez-Mitchell, R.5
-
44
-
-
0033136019
-
Investigating a back door mechanism of actin phosphate release by steered molecular dynamics
-
Wriggers, W., and K. Schulten. 1999. Investigating a back door mechanism of actin phosphate release by steered molecular dynamics. PROTEINS: Struct., Funct., Genet. 35:262-273.
-
(1999)
PROTEINS: Struct., Funct., Genet.
, vol.35
, pp. 262-273
-
-
Wriggers, W.1
Schulten, K.2
-
45
-
-
0034602693
-
Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme
-
Yang, G., C. Cecconi, W. Baase, I. Vetter, W. Breyer, J. Haack, B. Matthews, F. Dahlquist, and C. Bustamante. 2000. Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme. Proc. Natl. Acad. Sci. USA. 97:139-144.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 139-144
-
-
Yang, G.1
Cecconi, C.2
Baase, W.3
Vetter, I.4
Breyer, W.5
Haack, J.6
Matthews, B.7
Dahlquist, F.8
Bustamante, C.9
|