-
1
-
-
18844413446
-
Structural insights into translational fidelity
-
Ogle JM, Ramakrishnan V (2005) Structural insights into translational fidelity. Annu Rev Biochem 74:129-177.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 129-177
-
-
Ogle, J.M.1
Ramakrishnan, V.2
-
2
-
-
0019996592
-
Characterization of the GTPase reaction of elongation factor Tu
-
Eccleston JF, Webb MR (1982) Characterization of the GTPase reaction of elongation factor Tu. J Biol Chem 257:5046-5049.
-
(1982)
J Biol Chem
, vol.257
, pp. 5046-5049
-
-
Eccleston, J.F.1
Webb, M.R.2
-
3
-
-
0027917990
-
The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation
-
Kjeldgaard M, Nissen P, Thirup S, Nyborg J (1993) The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation. Structure 1:35-50.
-
(1993)
Structure
, vol.1
, pp. 35-50
-
-
Kjeldgaard, M.1
Nissen, P.2
Thirup, S.3
Nyborg, J.4
-
4
-
-
0026509493
-
Nucleotide binding and GTP hydrolysis by elongation factor Tu from Thermus thermophilus as monitored by proton NMR
-
Limmer S, Reiser COA, Schirmer NK, Grillenbeck NW, Sprinzl M (1992) Nucleotide binding and GTP hydrolysis by elongation factor Tu from Thermus thermophilus as monitored by proton NMR. Biochemistry 31:2970-2977.
-
(1992)
Biochemistry
, vol.31
, pp. 2970-2977
-
-
Limmer, S.1
Reiser, C.O.A.2
Schirmer, N.K.3
Grillenbeck, N.W.4
Sprinzl, M.5
-
5
-
-
0041735420
-
Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome
-
Daviter T, Wieden HJ, Rodnina MV (2003) Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome. J Mol Biol 332:689-699.
-
(2003)
J Mol Biol
, vol.332
, pp. 689-699
-
-
Daviter, T.1
Wieden, H.J.2
Rodnina, M.V.3
-
6
-
-
0027179878
-
Crystal structure of active elongation factor Tu reveals major domain rearrangements
-
Berchtold H, et al. (1993) Crystal structure of active elongation factor Tu reveals major domain rearrangements. Nature 365:126-132.
-
(1993)
Nature
, vol.365
, pp. 126-132
-
-
Berchtold, H.1
-
7
-
-
51549117861
-
Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome
-
LeBarron J, et al. (2008) Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome. J Struct Biol 164:24-32.
-
(2008)
J Struct Biol
, vol.164
, pp. 24-32
-
-
LeBarron, J.1
-
8
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco LG, Villa E, Mitra K, Frank J, Schulten K (2008) Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16:673-683.
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
9
-
-
0036646535
-
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process
-
Valle M, et al. (2002) Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. EMBO J 21:3557-3567.
-
(2002)
EMBO J
, vol.21
, pp. 3557-3567
-
-
Valle, M.1
-
10
-
-
0036829080
-
Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex
-
Stark H, et al. (2002) Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex. Nat Struct Biol 9:849-854.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 849-854
-
-
Stark, H.1
-
11
-
-
0242407184
-
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy
-
Valle M, et al. (2003) Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nat Struct Biol 10:899-906.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 899-906
-
-
Valle, M.1
-
12
-
-
0035907234
-
Conformational change of elongation factor Tu (EF-Tu) induced by antibiotic binding
-
Vogeley L, Palm GJ, Mesters JR, Hilgenfeld R (2001) Conformational change of elongation factor Tu (EF-Tu) induced by antibiotic binding. J Biol Chem 276:17149-17155.
-
(2001)
J Biol Chem
, vol.276
, pp. 17149-17155
-
-
Vogeley, L.1
Palm, G.J.2
Mesters, J.R.3
Hilgenfeld, R.4
-
13
-
-
0035834388
-
The guanine nucleotide-binding switch in three dimensions
-
Vetter IR, Wittinghofer A (2001) The guanine nucleotide-binding switch in three dimensions. Science 294:1299-1304.
-
(2001)
Science
, vol.294
, pp. 1299-1304
-
-
Vetter, I.R.1
Wittinghofer, A.2
-
14
-
-
33746371720
-
The importance of the P-loop and domain movements in EF-Tu for guanine nucleotide exchange
-
Dahl LD, Wieden HJ, Rodnina MV, Knudsen CR (2006) The importance of the P-loop and domain movements in EF-Tu for guanine nucleotide exchange. J Biol Chem 281:21139-21146.
-
(2006)
J Biol Chem
, vol.281
, pp. 21139-21146
-
-
Dahl, L.D.1
Wieden, H.J.2
Rodnina, M.V.3
Knudsen, C.R.4
-
15
-
-
29444436631
-
A pathway for the transmission of allosteric signals in the ribosome through a network of RNA tertiary interactions
-
Chan YL, Dresios J, Wool IG (2006) A pathway for the transmission of allosteric signals in the ribosome through a network of RNA tertiary interactions. J Mol Biol 355:1014-1025.
-
(2006)
J Mol Biol
, vol.355
, pp. 1014-1025
-
-
Chan, Y.L.1
Dresios, J.2
Wool, I.G.3
-
16
-
-
4744365694
-
tRNA selection and kinetic proofreading in translation
-
Blanchard SC, Gonzalez RL, Kim HD, Chu S, Puglisi JD (2004) tRNA selection and kinetic proofreading in translation. Nat Struct Mol Biol 11:1008-1014.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez, R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
18
-
-
0030587857
-
Helix unwinding in the effector region of elongation factor EF-Tu-GDP
-
Polekhina G, et al. (1996) Helix unwinding in the effector region of elongation factor EF-Tu-GDP. Structure 4:1141-1151.
-
(1996)
Structure
, vol.4
, pp. 1141-1151
-
-
Polekhina, G.1
-
19
-
-
49349091956
-
Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy
-
Sengupta J, et al. (2008) Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy. J Mol Biol 382:179-187.
-
(2008)
J Mol Biol
, vol.382
, pp. 179-187
-
-
Sengupta, J.1
-
20
-
-
0030017819
-
Limited proteolysis and amino acid replacements in the effector region of Thermus thermophilus elongation factor Tu
-
Zeidler W, et al. (1996) Limited proteolysis and amino acid replacements in the effector region of Thermus thermophilus elongation factor Tu. Eur J Biochem 239:265-271.
-
(1996)
Eur J Biochem
, vol.239
, pp. 265-271
-
-
Zeidler, W.1
-
21
-
-
0030774277
-
The ribosome-in-pieces: Binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23S ribosomal RNA
-
Munishkin A, Wooll G (1997) The ribosome-in-pieces: Binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23S ribosomal RNA. Proc Natl Acad Sci USA 94:12280-12284.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 12280-12284
-
-
Munishkin, A.1
Wooll, G.2
-
22
-
-
0028812785
-
Phe, EF-Tu, and a GTP analog
-
Phe, EF-Tu, and a GTP analog. Science 270:1464-1472.
-
(1995)
Science
, vol.270
, pp. 1464-1472
-
-
Nissen, P.1
-
23
-
-
0035933781
-
The importance of structural transitions of the switch II region for the functions of elongation factor Tu on the ribosome
-
Knudsen C, Wieden HJ, Rodnina MV (2001) The importance of structural transitions of the switch II region for the functions of elongation factor Tu on the ribosome. J Biol Chem 276:22183-22190.
-
(2001)
J Biol Chem
, vol.276
, pp. 22183-22190
-
-
Knudsen, C.1
Wieden, H.J.2
Rodnina, M.V.3
-
25
-
-
1242339673
-
Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome
-
Kothe U, Wieden HJ, Mohr D, Rodnina MV (2004) Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome. J Mol Biol 336:1011-1021.
-
(2004)
J Mol Biol
, vol.336
, pp. 1011-1021
-
-
Kothe, U.1
Wieden, H.J.2
Mohr, D.3
Rodnina, M.V.4
-
26
-
-
0037108102
-
GTPase activation of elongation factors Tu and G on the ribosome
-
Mohr D, Wintermeyer W, Rodnina MV (2002) GTPase activation of elongation factors Tu and G on the ribosome. Biochemistry 41:12520-12528.
-
(2002)
Biochemistry
, vol.41
, pp. 12520-12528
-
-
Mohr, D.1
Wintermeyer, W.2
Rodnina, M.V.3
-
27
-
-
0034700993
-
Intact aminoacyl-tRNA is required to trigger GTP hydrolysis by elongation factor Tu on the ribosome
-
Piepenburg O, et al. (2000) Intact aminoacyl-tRNA is required to trigger GTP hydrolysis by elongation factor Tu on the ribosome. Biochemistry 39:1734-1738.
-
(2000)
Biochemistry
, vol.39
, pp. 1734-1738
-
-
Piepenburg, O.1
-
28
-
-
0031587290
-
An A to U transversion at position 1067 of 23S rRNA from Escherichia coli impairs EF-Tu and EF-G function
-
Saarma U, Remme J, Ehrenberg M, Bilgin N (1997) An A to U transversion at position 1067 of 23S rRNA from Escherichia coli impairs EF-Tu and EF-G function. J Mol Biol 272:327-335.
-
(1997)
J Mol Biol
, vol.272
, pp. 327-335
-
-
Saarma, U.1
Remme, J.2
Ehrenberg, M.3
Bilgin, N.4
-
29
-
-
33745633068
-
Functional conformations of the L11-ribosomal RNA complex revealed by correlative analysis of cryo-EM and molecular dynamics simulations
-
Li W, Sengupta J, Rath BK, Frank J (2006) Functional conformations of the L11-ribosomal RNA complex revealed by correlative analysis of cryo-EM and molecular dynamics simulations. RNA 12:1240-1253.
-
(2006)
RNA
, vol.12
, pp. 1240-1253
-
-
Li, W.1
Sengupta, J.2
Rath, B.K.3
Frank, J.4
-
30
-
-
40849084990
-
Dynamics of recognition between tRNA and elongation factor Tu
-
Eargle J, Black AA, Sethi A, Trabuco LG, Luthey-Schulten Z (2008) Dynamics of recognition between tRNA and elongation factor Tu. J Mol Biol 377:1382-1405.
-
(2008)
J Mol Biol
, vol.377
, pp. 1382-1405
-
-
Eargle, J.1
Black, A.A.2
Sethi, A.3
Trabuco, L.G.4
Luthey-Schulten, Z.5
-
31
-
-
39149091041
-
Preparation of macromolecular complexes for cryo-electron microscopy
-
Grassucci RA, Taylor DJ, Frank J (2007) Preparation of macromolecular complexes for cryo-electron microscopy. Nat Protoc 2:3239-3246.
-
(2007)
Nat Protoc
, vol.2
, pp. 3239-3246
-
-
Grassucci, R.A.1
Taylor, D.J.2
Frank, J.3
-
32
-
-
33750488430
-
Structural basis for mRNA and tRNA positioning on the ribosome
-
Berk V, Zhang W, Pai RD, Cate JHD (2006) Structural basis for mRNA and tRNA positioning on the ribosome. Proc Natl Acad Sci USA 103:15830-15834.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15830-15834
-
-
Berk, V.1
Zhang, W.2
Pai, R.D.3
Cate, J.H.D.4
-
33
-
-
0027794972
-
Targeted molecular dynamics simulation of conformational change - Application to the T → R transition in insulin
-
Schlitter J, Engels M, Krüger P, Jacoby E, Wollmer A (1993) Targeted molecular dynamics simulation of conformational change - Application to the T → R transition in insulin. Mol Sim 10:291-308.
-
(1993)
Mol Sim
, vol.10
, pp. 291-308
-
-
Schlitter, J.1
Engels, M.2
Krüger, P.3
Jacoby, E.4
Wollmer, A.5
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