-
1
-
-
0031440104
-
Molecular and functional analysis of cadherin-based adherens junctions
-
Yap, A. S., W. M. Brieher, and B. M. Gumbiner. 1997. Molecular and functional analysis of cadherin-based adherens junctions. Annu. Rev. Cell Dev. Biol. 13:119-146.
-
(1997)
Annu. Rev. Cell Dev. Biol.
, vol.13
, pp. 119-146
-
-
Yap, A.S.1
Brieher, W.M.2
Gumbiner, B.M.3
-
2
-
-
0025325167
-
Cadherins: A molecular family important in selective cell-cell adhesion
-
Takeichi, M. 1990. Cadherins: a molecular family important in selective cell-cell adhesion. Annu. Rev. Biochem. 59:237-252.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 237-252
-
-
Takeichi, M.1
-
3
-
-
0347481470
-
Cadherin-mediated cell-cell adhesion: Sticking together as a family
-
Patel, S. D., C. P. Chen, F. Bahna, B. Honig, and L. Shapiro. 2003. Cadherin-mediated cell-cell adhesion: sticking together as a family. Curr. Opin. Struct. Biol. 13:690-698.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 690-698
-
-
Patel, S.D.1
Chen, C.P.2
Bahna, F.3
Honig, B.4
Shapiro, L.5
-
4
-
-
0035976712
-
Single amino acid substitutions in conserved extracellular domains of E-cadherin differ in their functional consequences
-
Handschuh, G., B. Luber, P. Hutzler, H. Hofler, and K. F. Becker. 2001. Single amino acid substitutions in conserved extracellular domains of E-cadherin differ in their functional consequences. J. Mol. Biol. 314:445-454.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 445-454
-
-
Handschuh, G.1
Luber, B.2
Hutzler, P.3
Hofler, H.4
Becker, K.F.5
-
5
-
-
0030859684
-
Lateral self-assembly of E-cadherin directed by cooperative calcium binding
-
Alattia, J. R., J. B. Ames, T. Porumb, K. I. Tong, Y. M. Heng, P. Ottensmeyer, C. M. Kay, and M. Ikura. 1997. Lateral self-assembly of E-cadherin directed by cooperative calcium binding. FEBS Lett. 417:405-408.
-
(1997)
FEBS Lett.
, vol.417
, pp. 405-408
-
-
Alattia, J.R.1
Ames, J.B.2
Porumb, T.3
Tong, K.I.4
Heng, Y.M.5
Ottensmeyer, P.6
Kay, C.M.7
Ikura, M.8
-
6
-
-
0028093281
-
Conformational changes of the recombinant extracellular domain of E-cadherin upon calcium binding
-
Pokutta, S., K. Herrenknecht, R. Kemler, and J. Engel. 1994. Conformational changes of the recombinant extracellular domain of E-cadherin upon calcium binding. Eur. J. Biochem. 223:1019-1026.
-
(1994)
Eur. J. Biochem.
, vol.223
, pp. 1019-1026
-
-
Pokutta, S.1
Herrenknecht, K.2
Kemler, R.3
Engel, J.4
-
7
-
-
0025612251
-
Single amino acid substitutions in one Ca2+ binding site of uvomorulin abolish the adhesive function
-
Ozawa, M., J. Engel, and R. Kemler. 1990. Single amino acid substitutions in one Ca2+ binding site of uvomorulin abolish the adhesive function. Cell. 63:1033-1038.
-
(1990)
Cell
, vol.63
, pp. 1033-1038
-
-
Ozawa, M.1
Engel, J.2
Kemler, R.3
-
8
-
-
0037123593
-
C-cadherin ectodomain structure and implications for cell adhesion mechanisms
-
Boggon, T. J., J. Murray, S. Chappuis-Flament, E. Wong, B. M. Gumbiner, and L. Shapiro. 2002. C-cadherin ectodomain structure and implications for cell adhesion mechanisms. Science. 296:1308-1313.
-
(2002)
Science
, vol.296
, pp. 1308-1313
-
-
Boggon, T.J.1
Murray, J.2
Chappuis-Flament, S.3
Wong, E.4
Gumbiner, B.M.5
Shapiro, L.6
-
9
-
-
0030139283
-
1H, 15N and 13C resonance assignments and monomeric structure of the amino-terminal extracellular domain of epithelial cadherin
-
Overduin, M., K. I. Tong, C. M. Kay, and M. Ikura. 1996. 1H, 15N and 13C resonance assignments and monomeric structure of the amino-terminal extracellular domain of epithelial cadherin. J. Biomol. NMR. 7:173-189.
-
(1996)
J. Biomol. NMR
, vol.7
, pp. 173-189
-
-
Overduin, M.1
Tong, K.I.2
Kay, C.M.3
Ikura, M.4
-
10
-
-
0029980542
-
Structural basis of calcium-induced E-cadherin rigidification and dimerization
-
Nagar, B., M. Overduin, M. Ikura, and J. M. Rini. 1996. Structural basis of calcium-induced E-cadherin rigidification and dimerization. Nature. 380:360-364.
-
(1996)
Nature
, vol.380
, pp. 360-364
-
-
Nagar, B.1
Overduin, M.2
Ikura, M.3
Rini, J.M.4
-
11
-
-
0033119626
-
A new crystal structure, Ca2+ dependence and mutational analysis reveal molecular details of E-cadherin homoassociation
-
Pertz, O., D. Bozic, A. W. Koch, C. Fauser, A. Brancaccio, and J. Engel. 1999. A new crystal structure, Ca2+ dependence and mutational analysis reveal molecular details of E-cadherin homoassociation. EMBO J. 18:1738-1747.
-
(1999)
EMBO J.
, vol.18
, pp. 1738-1747
-
-
Pertz, O.1
Bozic, D.2
Koch, A.W.3
Fauser, C.4
Brancaccio, A.5
Engel, J.6
-
12
-
-
17544403421
-
Proteolytic E-cadherin activation followed by solution NMR and x-ray crystallography
-
Haussinger, D., T. Ahrens, T. Aberle, J. Engel, J. Stetefeld, and S. Grzesiek. 2004. Proteolytic E-cadherin activation followed by solution NMR and x-ray crystallography. EMBO J. 23:1699-1708.
-
(2004)
EMBO J.
, vol.23
, pp. 1699-1708
-
-
Haussinger, D.1
Ahrens, T.2
Aberle, T.3
Engel, J.4
Stetefeld, J.5
Grzesiek, S.6
-
13
-
-
4143072460
-
Structure-based models of cadherin-mediated cell adhesion: The evolution continues
-
Koch, A. W., K. L. Manzur, and W. Shan. 2004. Structure-based models of cadherin-mediated cell adhesion: the evolution continues. Cell. Mol. Life Sci. 61:1884-1895.
-
(2004)
Cell. Mol. Life Sci.
, vol.61
, pp. 1884-1895
-
-
Koch, A.W.1
Manzur, K.L.2
Shan, W.3
-
14
-
-
0036930192
-
Calcium-dependent homoassociation of E-cadherin by NMR spectroscopy: Changes in mobility, conformation and mapping of contact regions
-
Haussinger, D., T. Ahrens, H. J. Sass, O. Pertz, J. Engel, and S. Grzesiek. 2002. Calcium-dependent homoassociation of E-cadherin by NMR spectroscopy: changes in mobility, conformation and mapping of contact regions. J. Mol. Biol. 324:823-839.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 823-839
-
-
Haussinger, D.1
Ahrens, T.2
Sass, H.J.3
Pertz, O.4
Engel, J.5
Grzesiek, S.6
-
15
-
-
0030842356
-
Calcium binding and homoassociation of E-cadherin domains
-
Koch, A. W., S. Pokutta, A. Lustig, and J. Engel. 1997. Calcium binding and homoassociation of E-cadherin domains. Biochemistry. 36:7697-7705.
-
(1997)
Biochemistry
, vol.36
, pp. 7697-7705
-
-
Koch, A.W.1
Pokutta, S.2
Lustig, A.3
Engel, J.4
-
16
-
-
0037013249
-
Disulfide bond formation promotes the cis- and trans-dimerization of the E-cadherin-derived first repeat
-
Makagiansar, I. T., P. D. Nguyen, A. Ikesue, K. Kuczera, W. Dentler, J. L. Urbauer, N. Galeva, M. Alterman, and T. J. Siahaan. 2002. Disulfide bond formation promotes the cis- and trans-dimerization of the E-cadherin-derived first repeat. J. Biol. Chem. 277:16002-16010.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 16002-16010
-
-
Makagiansar, I.T.1
Nguyen, P.D.2
Ikesue, A.3
Kuczera, K.4
Dentler, W.5
Urbauer, J.L.6
Galeva, N.7
Alterman, M.8
Siahaan, T.J.9
-
17
-
-
17044434489
-
Forced dissociation of the strand dimer interface between C-cadherin ectodomains
-
Bayas, M. V., K. Schulten, and D. Leckband. 2004. Forced dissociation of the strand dimer interface between C-cadherin ectodomains. Mechanics and Chemistry of Biosystems. 1:101-111.
-
(2004)
Mechanics and Chemistry of Biosystems
, vol.1
, pp. 101-111
-
-
Bayas, M.V.1
Schulten, K.2
Leckband, D.3
-
18
-
-
4444251032
-
Probing protein mechanics: Residue-level properties and their use in defining domains
-
Navizet, I., F. Cailliez, and R. Lavery. 2004. Probing protein mechanics: residue-level properties and their use in defining domains. Biophys. J. 87:1426-1435.
-
(2004)
Biophys. J.
, vol.87
, pp. 1426-1435
-
-
Navizet, I.1
Cailliez, F.2
Lavery, R.3
-
19
-
-
1042291214
-
Myosin flexibility: Structural domains and collective vibrations
-
Navizet, I., R. Lavery, and R. L. Jernigan. 2004. Myosin flexibility: structural domains and collective vibrations. Proteins. 54:384-393.
-
(2004)
Proteins
, vol.54
, pp. 384-393
-
-
Navizet, I.1
Lavery, R.2
Jernigan, R.L.3
-
20
-
-
0025398721
-
WHATIF: A molecular modeling and drug design program
-
Vriend, G. 1990. WHATIF: a molecular modeling and drug design program. J. Mol. Graph. 8:52-56.
-
(1990)
J. Mol. Graph.
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
21
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
22
-
-
0346844966
-
-
University of California, San Francisco, CA
-
Case, D. A., D. A. Pearlman, J. W. Caldwell, T. E. Cheatham III, J. Wang, W. S. Ross, C. L. Simmerling, T. A. Darden, K. M. Mer, R. V. Stanton, A. L. Cheng, J. J. Vincent, M. Crowley, V. Tsui, H. Gohlke, R. J. Radmer, Y. Duan, J. Pitera, I. Massova, G. L. Seibel, U. C. Singh, P. K. Weimer, and P. A. Kollman. 2002. AMBER7 User's Manual, University of California, San Francisco, CA.
-
(2002)
AMBER7 User's Manual
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham III, T.E.4
Wang, J.5
Ross, W.S.6
Simmerling, C.L.7
Darden, T.A.8
Mer, K.M.9
Stanton, R.V.10
Cheng, A.L.11
Vincent, J.J.12
Crowley, M.13
Tsui, V.14
Gohlke, H.15
Radmer, R.J.16
Duan, Y.17
Pitera, J.18
Massova, I.19
Seibel, G.L.20
Singh, U.C.21
Weimer, P.K.22
Kollman, P.A.23
more..
-
23
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J., P. Cieplak, and P. A. Kollman. 2000. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21:1049-1074.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
24
-
-
36449007976
-
The effect of long-range electrostatic interactions in simulations of macromolecular crystals: A comparison of the Ewald and truncated list methods
-
York, D. M., T. A. Darden, and L. G. Pedersen. 1993. The effect of long-range electrostatic interactions in simulations of macromolecular crystals: a comparison of the Ewald and truncated list methods. J. Chem. Phys. 99:8345-8348.
-
(1993)
J. Chem. Phys.
, vol.99
, pp. 8345-8348
-
-
York, D.M.1
Darden, T.A.2
Pedersen, L.G.3
-
25
-
-
0029170114
-
Molecular dynamics simulation on solvated biomolecular systems: The particle mesh Ewald method leads to stable trajectories of DNA. RNA and Proteins
-
Cheatham 3rd, T. E., J. L. Miller, T. Fox, T. A. Darden, and P. A. Kollman. 1995. Molecular dynamics simulation on solvated biomolecular systems: the particle mesh Ewald method leads to stable trajectories of DNA. RNA and Proteins, J. Am. Chem. Soc. 117:4193-4194.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4193-4194
-
-
Cheatham III, T.E.1
Miller, J.L.2
Fox, T.3
Darden, T.A.4
Kollman, P.A.5
-
26
-
-
33646940952
-
Numerical integration of Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J. P., G. Ciccotti, and H. J. C. Berendsen. 1977. Numerical integration of Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 23:327-341.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
28
-
-
0017098687
-
RNA double helices generated from crystal structures of double helical dinucleoside phosphates
-
Rosenberg, J. M., N. C. Seeman, R. O. Day, and A. Rich. 1976. RNA double helices generated from crystal structures of double helical dinucleoside phosphates. Biochem. Biophys. Res. Commun. 69:979-987.
-
(1976)
Biochem. Biophys. Res. Commun.
, vol.69
, pp. 979-987
-
-
Rosenberg, J.M.1
Seeman, N.C.2
Day, R.O.3
Rich, A.4
-
29
-
-
14244273182
-
Theory and applications of the generalized Born solvation model in macromolecular simulations
-
Tsui, V., and D. A. Case. 2000. Theory and applications of the generalized Born solvation model in macromolecular simulations. Biopolymers. 56:275-291.
-
(2000)
Biopolymers
, vol.56
, pp. 275-291
-
-
Tsui, V.1
Case, D.A.2
-
30
-
-
0041707971
-
A combined experimental and theoretical study of divalent metal ion selectivity and function in proteins: Application to E. coli ribonuclease H1
-
Babu, C. S., T. Dudev, R. Casareno, J. A. Cowan, and C. Lim. 2003. A combined experimental and theoretical study of divalent metal ion selectivity and function in proteins: application to E. coli ribonuclease H1. J. Am. Chem. Soc. 125:9318-9328.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 9318-9328
-
-
Babu, C.S.1
Dudev, T.2
Casareno, R.3
Cowan, J.A.4
Lim, C.5
-
31
-
-
0347602124
-
Converging free energy estimates: MM-PB(GB)SA studies on the protein-protein complex Ras-Raf
-
Gohlke, H., and D. A. Case. 2004. Converging free energy estimates: MM-PB(GB)SA studies on the protein-protein complex Ras-Raf. J. Comput. Chem. 25:238-250.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 238-250
-
-
Gohlke, H.1
Case, D.A.2
-
32
-
-
4043179941
-
DNA and its counterions: A molecular dynamics study
-
Varnai, P., and K. Zakrzewska. 2004. DNA and its counterions: a molecular dynamics study. Nucleic Acids Res. 32:4269-4280.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4269-4280
-
-
Varnai, P.1
Zakrzewska, K.2
-
34
-
-
17044401714
-
In search of the hair-call gating spring: Elastic properties of ankyrin and cadherin repeats
-
Sotomayor, M., D. P. Corey, and K. Schulten. 2005. In search of the hair-call gating spring: elastic properties of ankyrin and cadherin repeats. Structure. 13:669-682.
-
(2005)
Structure
, vol.13
, pp. 669-682
-
-
Sotomayor, M.1
Corey, D.P.2
Schulten, K.3
|