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Volumn 72, Issue 21, 2007, Pages 7947-7956

Molecular rotors as simple models to study amide NH-aromatic interactions and their role in the folding of peptide-like structures

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; AMINO ACIDS; AROMATIC HYDROCARBONS; FREE ENERGY; NUCLEAR MAGNETIC RESONANCE; PARAMETER ESTIMATION; PROTEIN FOLDING;

EID: 35348829116     PISSN: 00223263     EISSN: None     Source Type: Journal    
DOI: 10.1021/jo701552b     Document Type: Article
Times cited : (60)

References (137)
  • 1
    • 33846352016 scopus 로고    scopus 로고
    • For a very recent discussion on this topic, see
    • For a very recent discussion on this topic, see: Kool, E. T.; Waters, M. L. Nat. Chem. Biol. 2007, 3, 70-73.
    • (2007) Nat. Chem. Biol , vol.3 , pp. 70-73
    • Kool, E.T.1    Waters, M.L.2
  • 36
    • 35348875125 scopus 로고    scopus 로고
    • Perutz, M. F. Philos. Trans. Phys. Sci. Eng. 1993, 345, 105-112.
    • (a) Perutz, M. F. Philos. Trans. Phys. Sci. Eng. 1993, 345, 105-112.
  • 57
    • 0038511082 scopus 로고    scopus 로고
    • For some examples on related systems, see: a
    • For some examples on related systems, see: (a) Choi, K.; Hamilton, A. D. Coord. Chem. Rev. 2003, 240, 101-110.
    • (2003) Coord. Chem. Rev , vol.240 , pp. 101-110
    • Choi, K.1    Hamilton, A.D.2
  • 90
    • 10644274432 scopus 로고    scopus 로고
    • 15446-15452 and references therein
    • Jusuf, S.; Axelsen, P. H. Biochemistry 2004, 43, 15446-15452 and references therein.
    • (2004) Biochemistry , vol.43
    • Jusuf, S.1    Axelsen, P.H.2
  • 93
    • 33846906941 scopus 로고    scopus 로고
    • For some recent examples on dynamic NMR applied to conformational analysis, see: a
    • For some recent examples on dynamic NMR applied to conformational analysis, see: (a) Casarini, D.; Lunazzi, L.; Mancinelli, M.; Mazzanti, A. J. Org. Chem. 2007, 72, 998-1004.
    • (2007) J. Org. Chem , vol.72 , pp. 998-1004
    • Casarini, D.1    Lunazzi, L.2    Mancinelli, M.3    Mazzanti, A.4
  • 112
    • 35348830074 scopus 로고    scopus 로고
    • All the line shape simulations were performed using the gNMR v4.1.0 program.
    • All the line shape simulations were performed using the gNMR v4.1.0 program.
  • 116
    • 0005080372 scopus 로고    scopus 로고
    • This entropic contribution has been previously reported in related systems: (a) Chang, M. H, Masek, B. B, Dougherty, D. A. J. Am. Chem. Soc. 1985, 107, 1124-1133
    • This entropic contribution has been previously reported in related systems: (a) Chang, M. H.; Masek, B. B.; Dougherty, D. A. J. Am. Chem. Soc. 1985, 107, 1124-1133.
  • 119
    • 0037571112 scopus 로고    scopus 로고
    • All the molecular modeling was performed using: Spartan '04; Wavefunction, Inc.: Irvine, CA, 2004. For MMFF force field calculations, see: Halgren, T. A. J. Comput. Chem. 1996, 17, 490-519 and the other papers in this issue.
    • All the molecular modeling was performed using: Spartan '04; Wavefunction, Inc.: Irvine, CA, 2004. For MMFF force field calculations, see: Halgren, T. A. J. Comput. Chem. 1996, 17, 490-519 and the other papers in this issue.
  • 120
    • 0001414996 scopus 로고    scopus 로고
    • For quantum mechanics calculations, see: Kong, J.; White, C. A.; Krylov, A. I.; Sherrill, D.; Adamson, R. D.; Furlani, T. R.; Lee, M. S.; Lee, A. M.; Gwaltney, S. R.; Adams, T. R.; Ochsenfeld, C.; Gilbert, A. T. B.; Kedziora, G. S.; Rassolov, V. A.; Maurice, D. R.; Nair, N.; Shao, Y.; Besley, N. A.; Maslen, P. E.; Dombroski, J. P.; Daschel, H.; Zhang, W.; Korambath, P. P.; Baker, J.; Byrd, E. F. C.; van Voorhis, T.; Oumi, M.; Hirata, S.; Hsu, C.-P.; Ishikawa, N.; Florian, J.; Warshel, A.; Johnson, B. G.; Gill, P. M. W.; Head-Gordon, M.; Pople, J. A. J. Comput. Chem. 2000, 21, 1532-1548.
    • For quantum mechanics calculations, see: Kong, J.; White, C. A.; Krylov, A. I.; Sherrill, D.; Adamson, R. D.; Furlani, T. R.; Lee, M. S.; Lee, A. M.; Gwaltney, S. R.; Adams, T. R.; Ochsenfeld, C.; Gilbert, A. T. B.; Kedziora, G. S.; Rassolov, V. A.; Maurice, D. R.; Nair, N.; Shao, Y.; Besley, N. A.; Maslen, P. E.; Dombroski, J. P.; Daschel, H.; Zhang, W.; Korambath, P. P.; Baker, J.; Byrd, E. F. C.; van Voorhis, T.; Oumi, M.; Hirata, S.; Hsu, C.-P.; Ishikawa, N.; Florian, J.; Warshel, A.; Johnson, B. G.; Gill, P. M. W.; Head-Gordon, M.; Pople, J. A. J. Comput. Chem. 2000, 21, 1532-1548.
  • 129
    • 0035929452 scopus 로고    scopus 로고
    • It was not possible to accurately measure the corresponding amide NH temperature factor for all the other compounds due to exchange produced by ring inversion, a Alonso, E, López-Ortiz, F, Del Pozo, C, Peralta, E, Macías, A, González, J. J. Org. Chem. 2001, 66, 6333-6338
    • It was not possible to accurately measure the corresponding amide NH temperature factor for all the other compounds due to exchange produced by ring inversion, (a) Alonso, E.; López-Ortiz, F.; Del Pozo, C.; Peralta, E.; Macías, A.; González, J. J. Org. Chem. 2001, 66, 6333-6338.
  • 134
    • 33947202577 scopus 로고    scopus 로고
    • This approach has been very recently used to study sugar, aromatic weak interactions: Terraneo, G, Potenza, D, Canales, A, Jiménez-Barbero, J, Baldridge, K. K, Bernardi, A. J. Am. Chem. Soc. 2007, 129, 2890-2900
    • This approach has been very recently used to study sugar - aromatic weak interactions: Terraneo, G.; Potenza, D.; Canales, A.; Jiménez-Barbero, J.; Baldridge, K. K.; Bernardi, A. J. Am. Chem. Soc. 2007, 129, 2890-2900.


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