메뉴 건너뛰기




Volumn 2, Issue , 2006, Pages

Systems-level analyses identify extensive coupling among gene expression machines

Author keywords

Gene expression; Network analysis; Protein interactions; RNA processing; Transcription

Indexed keywords

DEAD BOX PROTEIN; TRANSCRIPTION FACTOR SAGA;

EID: 33645832853     PISSN: 17444292     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb4100045     Document Type: Article
Times cited : (36)

References (102)
  • 1
    • 19344363274 scopus 로고    scopus 로고
    • Cotranscriptional mRNP assembly: From the DNA to the nuclear pore
    • Aguilera A (2005) Cotranscriptional mRNP assembly: from the DNA to the nuclear pore. Curr Opin Cell Biol 17: 242-250
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 242-250
    • Aguilera, A.1
  • 2
    • 0032517779 scopus 로고    scopus 로고
    • A novel nuclear import pathway for the transcription factor TFIIS
    • Albertini M, Pemberton LF, Rosenblum JS, Blobel G (1998) A novel nuclear import pathway for the transcription factor TFIIS. J Cell Biol 143: 1447-1455
    • (1998) J Cell Biol , vol.143 , pp. 1447-1455
    • Albertini, M.1    Pemberton, L.F.2    Rosenblum, J.S.3    Blobel, G.4
  • 3
    • 12944334186 scopus 로고    scopus 로고
    • The Spanish connection: Transcription and mRNA processing get even closer
    • Ares Jr M, Proudfoot NJ (2005) The Spanish connection: transcription and mRNA processing get even closer. Cell 120: 163-166
    • (2005) Cell , vol.120 , pp. 163-166
    • Ares Jr., M.1    Proudfoot, N.J.2
  • 4
    • 9644278072 scopus 로고    scopus 로고
    • Purification of active TFIID from Saccharomyces cerevisiae. Extensive promoter contacts and co-activator function
    • Auty R, Steen H, Myers LC, Persinger J, Bartholomew B, Gygi SP, Buratowski S (2004) Purification of active TFIID from Saccharomyces cerevisiae. Extensive promoter contacts and co-activator function. J Biol Chem 279: 49973-49981
    • (2004) J Biol Chem , vol.279 , pp. 49973-49981
    • Auty, R.1    Steen, H.2    Myers, L.C.3    Persinger, J.4    Bartholomew, B.5    Gygi, S.P.6    Buratowski, S.7
  • 5
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein interaction data obtained from different sources
    • Bader GD, Hogue CW (2002) Analyzing yeast protein-protein interaction data obtained from different sources. Nat Biotechnol 20: 991-997
    • (2002) Nat Biotechnol , vol.20 , pp. 991-997
    • Bader, G.D.1    Hogue, C.W.2
  • 6
    • 0041810192 scopus 로고    scopus 로고
    • Nuclear functions for plasma membrane-associated proteins?
    • Review
    • Benmerah A, Scott M, Poupon V, Marullo S (2003) Nuclear functions for plasma membrane-associated proteins? Traffic 4: 503-511, Review
    • (2003) Traffic , vol.4 , pp. 503-511
    • Benmerah, A.1    Scott, M.2    Poupon, V.3    Marullo, S.4
  • 7
    • 19344378943 scopus 로고    scopus 로고
    • Rules of engagement: Co-transcriptional recruitment of pre-mRNA processing factors
    • Bentley DL (2005) Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors. Curr Opin Cell Biol 17: 251-256
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 251-256
    • Bentley, D.L.1
  • 8
    • 0036781068 scopus 로고    scopus 로고
    • Ribosome components are associated with sites of transcription
    • Brogna S, Sato TA, Rosbash M (2002) Ribosome components are associated with sites of transcription. Mol Cell 10: 93-104
    • (2002) Mol Cell , vol.10 , pp. 93-104
    • Brogna, S.1    Sato, T.A.2    Rosbash, M.3
  • 10
    • 0029775561 scopus 로고    scopus 로고
    • The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex
    • Colot HV, Stutz F, Rosbash M (1996) The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex. Genes Dev 10: 1699-1708
    • (1996) Genes Dev , vol.10 , pp. 1699-1708
    • Colot, H.V.1    Stutz, F.2    Rosbash, M.3
  • 13
    • 2342640073 scopus 로고    scopus 로고
    • Does protein synthesis occur in the nucleus?
    • Review
    • Dahlberg JE, Lund E (2004) Does protein synthesis occur in the nucleus? Curr Opin Cell Biol 16: 335-338, Review
    • (2004) Curr Opin Cell Biol , vol.16 , pp. 335-338
    • Dahlberg, J.E.1    Lund, E.2
  • 15
    • 0033133863 scopus 로고    scopus 로고
    • Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families
    • de la Cruz J, Kressler D, Linder P (1999) Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 24: 192-198
    • (1999) Trends Biochem Sci , vol.24 , pp. 192-198
    • De La Cruz, J.1    Kressler, D.2    Linder, P.3
  • 16
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: Two methods for assessment of the reliability of high throughput observations
    • Deane CM, Salwinski L, Xenarios I, Eisenberg D (2002) Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol Cell Proteomics 1: 349-356
    • (2002) Mol Cell Proteomics , vol.1 , pp. 349-356
    • Deane, C.M.1    Salwinski, L.2    Xenarios, I.3    Eisenberg, D.4
  • 18
    • 0036805329 scopus 로고    scopus 로고
    • Bridging structural biology and genomics: Assessing protein interaction data with known complexes
    • Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M (2002) Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends Genet 18: 529-536
    • (2002) Trends Genet , vol.18 , pp. 529-536
    • Edwards, A.M.1    Kus, B.2    Jansen, R.3    Greenbaum, D.4    Greenblatt, J.5    Gerstein, M.6
  • 19
    • 0037884974 scopus 로고    scopus 로고
    • An early function during transcription for the yeast mRNA export factor Dbp5p/Rat8p suggested by its genetic and physical interactions with transcription factor IIH components
    • Estruch F, Cole CN (2003) An early function during transcription for the yeast mRNA export factor Dbp5p/Rat8p suggested by its genetic and physical interactions with transcription factor IIH components. Mol Biol Cell 14: 1664-1676
    • (2003) Mol Biol Cell , vol.14 , pp. 1664-1676
    • Estruch, F.1    Cole, C.N.2
  • 21
    • 0033634693 scopus 로고    scopus 로고
    • Multiple links between the NuA4 histone acetyltransferase complex and epigenetic control of transcription
    • Galarneau L, Nourani A, Boudreault AA, Zhang Y, Heliot L (2000) Multiple links between the NuA4 histone acetyltransferase complex and epigenetic control of transcription. Mol Cell 5: 927-937
    • (2000) Mol Cell , vol.5 , pp. 927-937
    • Galarneau, L.1    Nourani, A.2    Boudreault, A.A.3    Zhang, Y.4    Heliot, L.5
  • 22
    • 15444373402 scopus 로고    scopus 로고
    • Cap-binding protein 1-mediated and eukaryotic translation initiation factor 4E-mediated pioneer rounds of translation in yeast
    • Gao Q, Das B, Sherman F, Maquat LE (2005) Cap-binding protein 1-mediated and eukaryotic translation initiation factor 4E-mediated pioneer rounds of translation in yeast. Proc Natl Acad Sci USA 102: 4258-4263
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 4258-4263
    • Gao, Q.1    Das, B.2    Sherman, F.3    Maquat, L.E.4
  • 23
    • 11144296359 scopus 로고    scopus 로고
    • Sir-mediated repression can occur independently of chromosomal and subnuclear contexts
    • Gartenberg MR, Neumann FR, Laroche T, Blaszczyk M, Gasser SM (2004) Sir-mediated repression can occur independently of chromosomal and subnuclear contexts. Cell 119: 955-967
    • (2004) Cell , vol.119 , pp. 955-967
    • Gartenberg, M.R.1    Neumann, F.R.2    Laroche, T.3    Blaszczyk, M.4    Gasser, S.M.5
  • 26
    • 0037059506 scopus 로고    scopus 로고
    • Proteomics. Integrating interactomes
    • Gerstein M, Lan N, Jansen R (2002) Proteomics. Integrating interactomes. Science 295: 284-287
    • (2002) Science , vol.295 , pp. 284-287
    • Gerstein, M.1    Lan, N.2    Jansen, R.3
  • 27
    • 0037447257 scopus 로고    scopus 로고
    • Assessing experimentally derived interactions in a small world
    • Goldberg DS, Roth FP (2003) Assessing experimentally derived interactions in a small world. Proc Natl Acad Sci USA 100: 4372-4376
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4372-4376
    • Goldberg, D.S.1    Roth, F.P.2
  • 28
    • 0027219266 scopus 로고
    • TIF4631 and TIF4632: Two yeast genes encoding the high-molecular-weight subunits of the cap-binding protein complex (eukaryotic initiation factor 4F) contain an RNA recognition motif-like sequence and carry out an essential function
    • Goyer C, Altmann M, Lee HS, Blanc A, Deshmukh M, Woolford Jr JL, Trachsel H, Sonenberg N (1993) TIF4631 and TIF4632: two yeast genes encoding the high-molecular-weight subunits of the cap-binding protein complex (eukaryotic initiation factor 4F) contain an RNA recognition motif-like sequence and carry out an essential function. Mol Cell Biol 13: 4860-4874
    • (1993) Mol Cell Biol , vol.13 , pp. 4860-4874
    • Goyer, C.1    Altmann, M.2    Lee, H.S.3    Blanc, A.4    Deshmukh, M.5    Woolford Jr., J.L.6    Trachsel, H.7    Sonenberg, N.8
  • 29
    • 0242317678 scopus 로고    scopus 로고
    • On the number of protein-protein interactions in the yeast proteome
    • Grigoriev A (2003) On the number of protein-protein interactions in the yeast proteome. Nucleic Acids Res 31: 4157-4161
    • (2003) Nucleic Acids Res , vol.31 , pp. 4157-4161
    • Grigoriev, A.1
  • 32
    • 19444387865 scopus 로고    scopus 로고
    • A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data
    • Hart CE, Sharenbroich L, Bornstein BJ, Trout D, King B, Mjolsness E, Wold BJ (2005) A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data. Nucleic Acids Res 33: 2580-2594
    • (2005) Nucleic Acids Res , vol.33 , pp. 2580-2594
    • Hart, C.E.1    Sharenbroich, L.2    Bornstein, B.J.3    Trout, D.4    King, B.5    Mjolsness, E.6    Wold, B.J.7
  • 34
    • 0028948708 scopus 로고
    • Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen
    • He F, Jacobson A (1995) Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen. Genes Dev 9: 437-454
    • (1995) Genes Dev , vol.9 , pp. 437-454
    • He, F.1    Jacobson, A.2
  • 35
    • 10044282898 scopus 로고    scopus 로고
    • A systems view of mRNP biology
    • Hieronymus H, Silver PA (2004) A systems view of mRNP biology. Genes Dev 18: 2845-2860
    • (2004) Genes Dev , vol.18 , pp. 2845-2860
    • Hieronymus, H.1    Silver, P.A.2
  • 36
    • 0033375911 scopus 로고    scopus 로고
    • Mechanisms of mRNA surveillance in eukaryotes
    • Hilleren P, Parker R (1999) Mechanisms of mRNA surveillance in eukaryotes. Annu Rev Genet 33: 229-260
    • (1999) Annu Rev Genet , vol.33 , pp. 229-260
    • Hilleren, P.1    Parker, R.2
  • 37
    • 0034659241 scopus 로고    scopus 로고
    • RNA polymerase II and the integration of nuclear events
    • Hirose Y, Manley JL (2000) RNA polymerase II and the integration of nuclear events. Genes Dev 14: 1415-1429
    • (2000) Genes Dev , vol.14 , pp. 1415-1429
    • Hirose, Y.1    Manley, J.L.2
  • 40
    • 1642303746 scopus 로고    scopus 로고
    • Molecular cross-talk between the transcription, translation, and nonsense-mediated decay machineries
    • Iborra FJ, Escargueil AE, Kwek KY, Akoulitchev A, Cook PR (2004a) Molecular cross-talk between the transcription, translation, and nonsense-mediated decay machineries. J Cell Sci 117: 899-906
    • (2004) J Cell Sci , vol.117 , pp. 899-906
    • Iborra, F.J.1    Escargueil, A.E.2    Kwek, K.Y.3    Akoulitchev, A.4    Cook, P.R.5
  • 41
    • 0035839002 scopus 로고    scopus 로고
    • Coupled transcription and translation within nuclei of mammalian cells
    • Iborra FJ, Jackson DA, Cook PR (2001) Coupled transcription and translation within nuclei of mammalian cells. Science 293: 1139-1142
    • (2001) Science , vol.293 , pp. 1139-1142
    • Iborra, F.J.1    Jackson, D.A.2    Cook, P.R.3
  • 43
    • 0035823036 scopus 로고    scopus 로고
    • Evidence for a pioneer round of mRNA translation: MRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20
    • Ishigaki Y, Li X, Serin G, Maquat LE (2001) Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20. Cell 106: 607-617
    • (2001) Cell , vol.106 , pp. 607-617
    • Ishigaki, Y.1    Li, X.2    Serin, G.3    Maquat, L.E.4
  • 44
    • 4644306020 scopus 로고    scopus 로고
    • Analyzing protein function on a genomic scale: The importance of gold-standard positives and negatives for network prediction
    • Jansen R, Gerstein M (2004) Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Curr Opin Microbiol 7: 535-545
    • (2004) Curr Opin Microbiol , vol.7 , pp. 535-545
    • Jansen, R.1    Gerstein, M.2
  • 45
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • Jansen R, Greenbaum D, Gerstein M (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res 12: 37-46
    • (2002) Genome Res , vol.12 , pp. 37-46
    • Jansen, R.1    Greenbaum, D.2    Gerstein, M.3
  • 47
    • 0035022577 scopus 로고    scopus 로고
    • A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription
    • Jensen TH, Patricio K, McCarthy T, Rosbash M (2001) A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription. Mol Cell 7: 887-898
    • (2001) Mol Cell , vol.7 , pp. 887-898
    • Jensen, T.H.1    Patricio, K.2    McCarthy, T.3    Rosbash, M.4
  • 48
    • 0031746189 scopus 로고    scopus 로고
    • Sir- and silencer-independent disruption of silencing in Saccharomyces by Sas10p
    • Kamakaka RT, Rine J (1998) Sir- and silencer-independent disruption of silencing in Saccharomyces by Sas10p. Genetics 149: 903-914
    • (1998) Genetics , vol.149 , pp. 903-914
    • Kamakaka, R.T.1    Rine, J.2
  • 49
    • 1542290655 scopus 로고    scopus 로고
    • Transitions in RNA polymerase II elongation complexes at the 3′ ends of genes
    • Kim M, Ahn SH, Krogan NJ, Greenblatt JF, Buratowski S (2004) Transitions in RNA polymerase II elongation complexes at the 3′ ends of genes. EMBO J 23: 354-364
    • (2004) EMBO J , vol.23 , pp. 354-364
    • Kim, M.1    Ahn, S.H.2    Krogan, N.J.3    Greenblatt, J.F.4    Buratowski, S.5
  • 50
    • 0028282551 scopus 로고
    • A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II
    • Kim YJ, Bjorklund S, Li Y, Sayre MH, Kornberg RD (1994) A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77: 599-608
    • (1994) Cell , vol.77 , pp. 599-608
    • Kim, Y.J.1    Bjorklund, S.2    Li, Y.3    Sayre, M.H.4    Kornberg, R.D.5
  • 51
    • 9344248397 scopus 로고    scopus 로고
    • Nonsense-mediated decay does not occur within the yeast nucleus
    • Kuperwasser N, Brogna S, Dower K, Rosbash M (2004) Nonsense-mediated decay does not occur within the yeast nucleus. RNA 10: 1907-1915
    • (2004) RNA , vol.10 , pp. 1907-1915
    • Kuperwasser, N.1    Brogna, S.2    Dower, K.3    Rosbash, M.4
  • 52
    • 0344270881 scopus 로고    scopus 로고
    • Association of the Mediator complex with enhancers of active genes
    • Kuras L, Borggrefe T, Kornberg RD (2003) Association of the Mediator complex with enhancers of active genes. Proc Natl Acad Sci USA 100: 13887-13891
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 13887-13891
    • Kuras, L.1    Borggrefe, T.2    Kornberg, R.D.3
  • 53
    • 0028027132 scopus 로고
    • Initiation factor eIF-4E of Saccharomyces cerevisiae. Distribution within the cell, binding to mRNA, and consequences of its overproduction
    • Lang V, Zanchin NI, Lunsdorf H, Tuite M, McCarthy JE (1994) Initiation factor eIF-4E of Saccharomyces cerevisiae. Distribution within the cell, binding to mRNA, and consequences of its overproduction. J Biol Chem 269: 6117-6123
    • (1994) J Biol Chem , vol.269 , pp. 6117-6123
    • Lang, V.1    Zanchin, N.I.2    Lunsdorf, H.3    Tuite, M.4    McCarthy, J.E.5
  • 54
    • 0033940731 scopus 로고    scopus 로고
    • The dynamics of yeast telomeres and silencing proteins through the cell cycle
    • Laroche T, Martin SG, Tsai-Pflugfelder M, Gasser SM (2000) The dynamics of yeast telomeres and silencing proteins through the cell cycle. J Struct Biol 129: 159-174
    • (2000) J Struct Biol , vol.129 , pp. 159-174
    • Laroche, T.1    Martin, S.G.2    Tsai-Pflugfelder, M.3    Gasser, S.M.4
  • 55
    • 0034193569 scopus 로고    scopus 로고
    • Pre-mRNA splicing alters mRNP composition: Evidence for stable association of proteins at exon-exon junctions
    • Le Hir H, Moore MJ, Maquat LE (2000) Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions. Genes Dev 14: 1098-1108
    • (2000) Genes Dev , vol.14 , pp. 1098-1108
    • Le Hir, H.1    Moore, M.J.2    Maquat, L.E.3
  • 56
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee I, Date SV, Adai AT, Marcotte EM (2004) A probabilistic functional network of yeast genes. Science 306: 1555-1558
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1    Date, S.V.2    Adai, A.T.3    Marcotte, E.M.4
  • 57
    • 0035878119 scopus 로고    scopus 로고
    • Messenger RNAs are recruited for nuclear export during transcription
    • Lei EP, Krebber H, Silver PA (2001) Messenger RNAs are recruited for nuclear export during transcription. Genes Dev 15: 1771-1782
    • (2001) Genes Dev , vol.15 , pp. 1771-1782
    • Lei, E.P.1    Krebber, H.2    Silver, P.A.3
  • 58
    • 0029790606 scopus 로고    scopus 로고
    • A yeast cap binding protein complex (yCBC) acts at an early step in pre-mRNA splicing
    • Lewis JD, Gorlich D, Mattaj IW (1996) A yeast cap binding protein complex (yCBC) acts at an early step in pre-mRNA splicing. Nucleic Acids Res 24: 3332-3336
    • (1996) Nucleic Acids Res , vol.24 , pp. 3332-3336
    • Lewis, J.D.1    Gorlich, D.2    Mattaj, I.W.3
  • 60
    • 0033536019 scopus 로고    scopus 로고
    • A Crm1p-independent nuclear export path for the mRNA-associated protein, Npl3p/Mtr13p
    • Liu Y, Guo W, Tartakoff PY, Tartakoff AM (1999) A Crm1p-independent nuclear export path for the mRNA-associated protein, Npl3p/Mtr13p. Proc Natl Acad Sci USA 96: 6739-6744
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 6739-6744
    • Liu, Y.1    Guo, W.2    Tartakoff, P.Y.3    Tartakoff, A.M.4
  • 61
    • 0037041395 scopus 로고    scopus 로고
    • An extensive network of coupling among gene expression machines
    • Maniatis T, Reed R (2002) An extensive network of coupling among gene expression machines. Nature 416: 499-506
    • (2002) Nature , vol.416 , pp. 499-506
    • Maniatis, T.1    Reed, R.2
  • 62
    • 0001329015 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay
    • Maquat LE (2002) Nonsense-mediated mRNA decay. Curr Biol 12: R196-R197
    • (2002) Curr Biol , vol.12
    • Maquat, L.E.1
  • 63
    • 22344438756 scopus 로고    scopus 로고
    • Recruitment of the human TREX complex to mRNA during splicing
    • Masuda S, Das R, Cheng H, Hurt E, Dorman N, Reed R (2005) Recruitment of the human TREX complex to mRNA during splicing. Genes Dev 19: 1512-1517
    • (2005) Genes Dev , vol.19 , pp. 1512-1517
    • Masuda, S.1    Das, R.2    Cheng, H.3    Hurt, E.4    Dorman, N.5    Reed, R.6
  • 64
    • 0037064145 scopus 로고    scopus 로고
    • Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts
    • Mendell JT, ap Rhys CM, Dietz HC (2002) Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts. Science 298: 419-422
    • (2002) Science , vol.298 , pp. 419-422
    • Mendell, J.T.1    Ap Rhys, C.M.2    Dietz, H.C.3
  • 66
    • 0033151767 scopus 로고    scopus 로고
    • mRNA polyadenylation and its coupling to other RNA processing reactions and to transcription
    • Minvielle-Sebastia L, Keller W (1999) mRNA polyadenylation and its coupling to other RNA processing reactions and to transcription. Curr Opin Cell Biol 11: 352-357
    • (1999) Curr Opin Cell Biol , vol.11 , pp. 352-357
    • Minvielle-Sebastia, L.1    Keller, W.2
  • 67
    • 0035793376 scopus 로고    scopus 로고
    • Protein dynamics: Implications for nuclear architecture and gene expression
    • Misteli T (2001) Protein dynamics: implications for nuclear architecture and gene expression. Science 291: 843-847
    • (2001) Science , vol.291 , pp. 843-847
    • Misteli, T.1
  • 68
    • 0348184963 scopus 로고    scopus 로고
    • ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
    • Mizuguchi G, Shen X, Landry J, Wu WH, Sen S, Wu C (2004) ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303: 343-348
    • (2004) Science , vol.303 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.H.4    Sen, S.5    Wu, C.6
  • 70
    • 0037154982 scopus 로고    scopus 로고
    • A unified theory of gene expression
    • Orphanides G, Reinberg D (2002) A unified theory of gene expression. Cell 108: 439-451
    • (2002) Cell , vol.108 , pp. 439-451
    • Orphanides, G.1    Reinberg, D.2
  • 72
    • 1442354190 scopus 로고    scopus 로고
    • An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay
    • Palacios IM, Gatfield D, St Johnston D, Izaurralde E (2004) An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay. Nature 427: 753-757
    • (2004) Nature , vol.427 , pp. 753-757
    • Palacios, I.M.1    Gatfield, D.2    St Johnston, D.3    Izaurralde, E.4
  • 73
    • 0010173139 scopus 로고    scopus 로고
    • A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination
    • Piruat JI, Aguilera A (1998) A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination. EMBO J 17: 4859-4872
    • (1998) EMBO J , vol.17 , pp. 4859-4872
    • Piruat, J.I.1    Aguilera, A.2
  • 74
    • 0037154967 scopus 로고    scopus 로고
    • Integrating mRNA processing with transcription
    • Proudfoot NJ, Furger A, Dye MJ (2002) Integrating mRNA processing with transcription. Cell 108: 501-512
    • (2002) Cell , vol.108 , pp. 501-512
    • Proudfoot, N.J.1    Furger, A.2    Dye, M.J.3
  • 75
    • 15944418607 scopus 로고    scopus 로고
    • Random forest similarity for protein-protein interaction prediction from multiple sources
    • Qi Y, Klein-Seetharaman J, Bar-Joseph Z (2005) Random forest similarity for protein-protein interaction prediction from multiple sources. Pac Symp Biocomput 10: 531-542
    • (2005) Pac Symp Biocomput , vol.10 , pp. 531-542
    • Qi, Y.1    Klein-Seetharaman, J.2    Bar-Joseph, Z.3
  • 76
    • 0038699144 scopus 로고    scopus 로고
    • Coupling transcription, splicing and mRNA export
    • Reed R (2003) Coupling transcription, splicing and mRNA export. Curr Opin Cell Biol 15: 326-331
    • (2003) Curr Opin Cell Biol , vol.15 , pp. 326-331
    • Reed, R.1
  • 77
    • 19344374094 scopus 로고    scopus 로고
    • TREX, SR proteins and export of mRNA
    • Reed R, Cheng H (2005) TREX, SR proteins and export of mRNA. Curr Opin Cell Biol 17: 269-273
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 269-273
    • Reed, R.1    Cheng, H.2
  • 78
    • 0036826885 scopus 로고    scopus 로고
    • 5′ exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly
    • Reichert VL, Le Hir H, Jurica MS, Moore MJ (2002) 5′ exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly. Genes Dev 16: 2778-2791
    • (2002) Genes Dev , vol.16 , pp. 2778-2791
    • Reichert, V.L.1    Le Hir, H.2    Jurica, M.S.3    Moore, M.J.4
  • 81
    • 18844463753 scopus 로고    scopus 로고
    • Identifying the right stop: Determining how the surveillance complex recognizes and degrades an aberrant mRNA
    • Ruiz-Echevarria MJ, Gonzalez CI, Peltz SW (1998) Identifying the right stop: determining how the surveillance complex recognizes and degrades an aberrant mRNA. EMBO J 17: 575-589
    • (1998) EMBO J , vol.17 , pp. 575-589
    • Ruiz-Echevarria, M.J.1    Gonzalez, C.I.2    Peltz, S.W.3
  • 82
    • 0242268461 scopus 로고    scopus 로고
    • Predicting protein functions from redundancies in large-scale protein interaction networks
    • Samanta MP, Liang S (2003) Predicting protein functions from redundancies in large-scale protein interaction networks. Proc Natl Acad Sci USA 100: 12579-12583
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12579-12583
    • Samanta, M.P.1    Liang, S.2
  • 85
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr SS, Milo R, Mangan S, Alon U (2002) Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 31: 64-68
    • (2002) Nat Genet , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 86
    • 0042671282 scopus 로고    scopus 로고
    • Involvement of actin-related proteins in ATP-dependent chromatin remodeling
    • Shen X, Ranallo R, Choi E, Wu C (2003) Involvement of actin-related proteins in ATP-dependent chromatin remodeling. Mol Cell 12: 147-155
    • (2003) Mol Cell , vol.12 , pp. 147-155
    • Shen, X.1    Ranallo, R.2    Choi, E.3    Wu, C.4
  • 87
    • 1842577707 scopus 로고    scopus 로고
    • eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay
    • Shibuya T, Tange TO, Sonenberg N, Moore MJ (2004) eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay. Nat Struct Mol Biol 11: 346-351
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 346-351
    • Shibuya, T.1    Tange, T.O.2    Sonenberg, N.3    Moore, M.J.4
  • 88
    • 19344363599 scopus 로고    scopus 로고
    • Quality control of messenger ribonucleoprotein particles in the nucleus and at the pore
    • Sommer P, Nehrbass U (2005) Quality control of messenger ribonucleoprotein particles in the nucleus and at the pore. Curr Opin Cell Biol 17: 294-301
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 294-301
    • Sommer, P.1    Nehrbass, U.2
  • 89
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Spirin V, Mirny LA (2003) Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci USA 100: 12123-12128
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 91
    • 1542357674 scopus 로고    scopus 로고
    • Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
    • Tanay A, Sharan R, Kupiec M, Shamir R (2004) Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc Natl Acad Sci USA 101: 2981-2986
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 2981-2986
    • Tanay, A.1    Sharan, R.2    Kupiec, M.3    Shamir, R.4
  • 92
    • 2342540912 scopus 로고    scopus 로고
    • The ever-increasing complexities of the exon junction complex
    • Tange TO, Nott A, Moore MJ (2004) The ever-increasing complexities of the exon junction complex. Curr Opin Cell Biol 16: 279-284
    • (2004) Curr Opin Cell Biol , vol.16 , pp. 279-284
    • Tange, T.O.1    Nott, A.2    Moore, M.J.3
  • 93
    • 0030797564 scopus 로고    scopus 로고
    • Translation initiation factor eIF4G mediates in vitro poly(A) tail-dependent translation
    • Tarun Jr SZ, Wells SE, Deardorff JA, Sachs AB (1997) Translation initiation factor eIF4G mediates in vitro poly(A) tail-dependent translation. Proc Natl Acad Sci USA 94: 9046-9051
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 9046-9051
    • Tarun Jr., S.Z.1    Wells, S.E.2    Deardorff, J.A.3    Sachs, A.B.4
  • 95
    • 0345305369 scopus 로고    scopus 로고
    • Functional modules by relating protein interaction networks and gene expression
    • Tornow S, Mewes HW (2003) Functional modules by relating protein interaction networks and gene expression. Nucleic Acids Res 31: 6283-6289
    • (2003) Nucleic Acids Res , vol.31 , pp. 6283-6289
    • Tornow, S.1    Mewes, H.W.2
  • 96
    • 11144248635 scopus 로고    scopus 로고
    • The topological relationship between the large-scale attributes and local interaction patterns of complex networks
    • Vazquez A, Dobrin R, Sergi D, Eckmann JP, Oltvai ZN, Barabasi AL (2004) The topological relationship between the large-scale attributes and local interaction patterns of complex networks. Proc Natl Acad Sci USA 101: 17940-17945
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17940-17945
    • Vazquez, A.1    Dobrin, R.2    Sergi, D.3    Eckmann, J.P.4    Oltvai, Z.N.5    Barabasi, A.L.6
  • 98
    • 0030786957 scopus 로고    scopus 로고
    • Yeast TAF(II)145 required for transcription of G1/S cyclin genes and regulated by the cellular growth state
    • Walker SS, Shen WC, Reese JC, Apone LM, Green MR (1997) Yeast TAF(II)145 required for transcription of G1/S cyclin genes and regulated by the cellular growth state. Cell 90: 607-614
    • (1997) Cell , vol.90 , pp. 607-614
    • Walker, S.S.1    Shen, W.C.2    Reese, J.C.3    Apone, L.M.4    Green, M.R.5
  • 99
    • 9744266768 scopus 로고    scopus 로고
    • The N-terminal domain of Nup159 forms a beta-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore
    • Weirich CS, Erzberger JP, Berger JM, Weis K (2004) The N-terminal domain of Nup159 forms a beta-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore. Mol Cell 16: 749-760
    • (2004) Mol Cell , vol.16 , pp. 749-760
    • Weirich, C.S.1    Erzberger, J.P.2    Berger, J.M.3    Weis, K.4
  • 100
    • 0036300610 scopus 로고    scopus 로고
    • RNA surveillance by nuclear scanning?
    • Wilkinson MF, Shyu AB (2002) RNA surveillance by nuclear scanning? Nat Cell Biol 4: E144-E147
    • (2002) Nat Cell Biol , vol.4
    • Wilkinson, M.F.1    Shyu, A.B.2
  • 101
    • 0036649020 scopus 로고    scopus 로고
    • Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
    • Wu LF, Hughes TR, Davierwala AP, Robinson MD, Stoughton R, Altschuler SJ (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat Genet 31: 255-265
    • (2002) Nat Genet , vol.31 , pp. 255-265
    • Wu, L.F.1    Hughes, T.R.2    Davierwala, A.P.3    Robinson, M.D.4    Stoughton, R.5    Altschuler, S.J.6
  • 102
    • 0344011136 scopus 로고    scopus 로고
    • Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation
    • Yeger-Lotem E, Margalit H (2003) Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation. Nucleic Acids Res 31: 6053-6061
    • (2003) Nucleic Acids Res , vol.31 , pp. 6053-6061
    • Yeger-Lotem, E.1    Margalit, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.