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Volumn 33, Issue 8, 2005, Pages 2580-2594

A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CELL CYCLE G1 PHASE; CLUSTER ANALYSIS; COMPARATIVE STUDY; COMPUTER PROGRAM; CONTROLLED STUDY; DNA SEQUENCE; GENE CLUSTER; GENE EXPRESSION SYSTEM; GENETIC TRANSCRIPTION; MATHEMATICAL ANALYSIS; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; QUANTITATIVE ANALYSIS; RECEIVER OPERATING CHARACTERISTIC; SCORING SYSTEM; YEAST CELL; BINDING SITE; BIOLOGY; BIOSYNTHESIS; CELL CYCLE; DNA MICROARRAY; EVALUATION; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; METHODOLOGY; NASA DISCIPLINE CELL BIOLOGY; NON-NASA CENTER; REGULATORY SEQUENCE; ROC CURVE; SYSTEM ANALYSIS; YEAST;

EID: 19444387865     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki536     Document Type: Article
Times cited : (12)

References (31)
  • 4
  • 7
    • 0029047333 scopus 로고
    • Classification-algorithm evaluation - 5 performance-measures based on confusion matrices
    • Forbes, A. (1995) Classification-algorithm evaluation - 5 performance-measures based on confusion matrices. J. Clin. Monit., 11, 189-206.
    • (1995) J. Clin. Monit. , vol.11 , pp. 189-206
    • Forbes, A.1
  • 8
    • 0037118191 scopus 로고    scopus 로고
    • Partition-distance: A problem and class of perfect graphs arising in clustering
    • Gusfield, D. (2002) Partition-distance: A problem and class of perfect graphs arising in clustering. Information Processing Letters, 82, 159-164.
    • (2002) Information Processing Letters , vol.82 , pp. 159-164
    • Gusfield, D.1
  • 9
    • 27244433852 scopus 로고    scopus 로고
    • Inferring genetic regulatory network intructure: Integrative analysis of genome-scale data
    • PhD thesis, Division of Biology, California Institute of Technology, Pasadena, CA, USA
    • Hart, C.E. (2005) Inferring genetic regulatory network structure: integrative analysis of genome-scale data. PhD thesis, Division of Biology, California Institute of Technology, Pasadena, CA, USA.
    • (2005)
    • Hart, C.E.1
  • 10
    • 84950632109 scopus 로고
    • Objective criteria for evaluation of clustering methods
    • Rand, W.M. (1971) Objective criteria for evaluation of clustering methods. J. Am. Stat. Assoc., 66, 846-850.
    • (1971) J. Am. Stat. Assoc. , vol.66 , pp. 846-850
    • Rand, W.M.1
  • 12
    • 0035514007 scopus 로고    scopus 로고
    • Resampling method for unsupervised estimation of cluster validity
    • Levine, E. and Domany, E. (2001) Resampling method for unsupervised estimation of cluster validity. Neural Comput., 13, 2573-2593.
    • (2001) Neural Comput. , vol.13 , pp. 2573-2593
    • Levine, E.1    Domany, E.2
  • 13
    • 0036359730 scopus 로고    scopus 로고
    • A stability based method for discovering structure in clustered data
    • Ben-Hur, A., Elisseeff, A. and Guyon, I. (2002) A stability based method for discovering structure in clustered data. Pac. Symp. Biocomput., 6-17.
    • (2002) Pac. Symp. Biocomput. , pp. 6-17
    • Ben-Hur, A.1    Elisseeff, A.2    Guyon, I.3
  • 15
    • 0023890867 scopus 로고
    • Measuring the accuracy of diagnostic systems
    • Swets, J.A. (1988) Measuring the accuracy of diagnostic systems. Science, 240, 1285-1293.
    • (1988) Science , vol.240 , pp. 1285-1293
    • Swets, J.A.1
  • 17
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • Dempster, A., Laird, N. and Rubin, D. (1977) Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc. Ser. B, 39, 1-38.
    • (1977) J. R. Stat. Soc. Ser. B , vol.39 , pp. 1-38
    • Dempster, A.1    Laird, N.2    Rubin, D.3
  • 18
    • 0034062083 scopus 로고    scopus 로고
    • Analysis of large-scale gene expression data
    • Sherlock, G. (2000) Analysis of large-scale gene expression data. Curr. Opin. Immunol., 12, 201-205.
    • (2000) Curr. Opin. Immunol. , vol.12 , pp. 201-205
    • Sherlock, G.1
  • 20
    • 0033657261 scopus 로고    scopus 로고
    • Principal components analysis to summarize microarray experiments: Application to sporulation time series
    • Raychaudhuri, S., Stuart. J.M. and Altman, R.B. (2000) Principal components analysis to summarize microarray experiments: Application to sporulation time series. Pac. Symp. Biocomput., 455-466.
    • (2000) Pac. Symp. Biocomput. , pp. 455-466
    • Raychaudhuri, S.1    Stuart, J.M.2    Altman, R.B.3
  • 21
    • 0022356563 scopus 로고
    • A repetitive DNA sequence that confers cell-cycle START (CDC28 )-dependent transcription of the HO gene in yeast
    • Nasmyth, K. (1985) A repetitive DNA sequence that confers cell-cycle START (CDC28)-dependent transcription of the HO gene in yeast. Cell, 42, 225-235.
    • (1985) Cell , vol.42 , pp. 225-235
    • Nasmyth, K.1
  • 22
    • 0023652328 scopus 로고
    • Cell cycle control of the yeast HO gene: Cis- and trans-acting regulators
    • Breeden, L. and Nasinyth, K. (1987) Cell cycle control of the yeast HO gene: Cis- and trans-acting regulators. Cell, 48, 389-397.
    • (1987) Cell , vol.48 , pp. 389-397
    • Breeden, L.1    Nasinyth, K.2
  • 25
    • 0035945567 scopus 로고    scopus 로고
    • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    • Iyer, V., Horak, C., Scafe, C., Botstein, D., Snyder, M. and Brown, P. (2001) Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature, 409, 533-538.
    • (2001) Nature , vol.409 , pp. 533-538
    • Iyer, V.1    Horak, C.2    Scafe, C.3    Botstein, D.4    Snyder, M.5    Brown, P.6
  • 26
    • 0037425623 scopus 로고    scopus 로고
    • Periodic transcription: A cycle within a cycle
    • Breeden, L.L. (2003) Periodic transcription: A cycle within a cycle. Curr. Biol., 13, R31-R38.
    • (2003) Curr. Biol. , vol.13
    • Breeden, L.L.1
  • 28
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis, M., Patterson, N., Endrizzi, M., Birren, B. and Lander, E.S. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature, 423, 241-254.
    • (2003) Nature , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 31
    • 0035028716 scopus 로고    scopus 로고
    • Overlapping and distinct foles of the duplicated yeast transcription factors Ace2p and Swi5p
    • Doolin, M., Johnson, A., Johnston, L. and Butler, G. (2001) Overlapping and distinct foles of the duplicated yeast transcription factors Ace2p and Swi5p. Mol. Microbiol., 40, 422-432.
    • (2001) Mol. Microbiol. , vol.40 , pp. 422-432
    • Doolin, M.1    Johnson, A.2    Johnston, L.3    Butler, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.