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Volumn 16, Issue 5, 2004, Pages 749-760

The N-terminal domain of Nup159 forms a β-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore

Author keywords

[No Author keywords available]

Indexed keywords

HELICASE; HELICASE DBP5; MESSENGER RNA; NUCLEOPORIN; NUCLEOPORIN 159; UNCLASSIFIED DRUG;

EID: 9744266768     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2004.10.032     Document Type: Article
Times cited : (119)

References (43)
  • 1
    • 0004270170 scopus 로고
    • F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, & K. Struhl. New York: John Wiley and Sons
    • Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., Struhl K. Current Protocols in Molecular Biology. 1987;John Wiley and Sons, New York
    • (1987) Current Protocols in Molecular Biology
  • 2
    • 0027412196 scopus 로고
    • Alscript: A tool to format multiple sequence alignments
    • Barton G.J. Alscript. a tool to format multiple sequence alignments Protein Eng. 6:1993;37-40
    • (1993) Protein Eng. , vol.6 , pp. 37-40
    • Barton, G.J.1
  • 4
    • 0035421240 scopus 로고    scopus 로고
    • An essential nuclear envelope integral membrane protein, Brr6p, required for nuclear transport
    • de Bruyn Kops A., Guthrie C. An essential nuclear envelope integral membrane protein, Brr6p, required for nuclear transport. EMBO J. 20:2001;4183-4193
    • (2001) EMBO J. , vol.20 , pp. 4183-4193
    • De Bruyn Kops, A.1    Guthrie, C.2
  • 5
    • 0033133863 scopus 로고    scopus 로고
    • Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families
    • de la Cruz J., Kressler D., Linder P. Unwinding RNA in Saccharomyces cerevisiae. DEAD-box proteins and related families Trends Biochem. Sci. 24:1999;192-198
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 192-198
    • De La Cruz, J.1    Kressler, D.2    Linder, P.3
  • 6
    • 0031467708 scopus 로고    scopus 로고
    • A structure/function analysis of Rat7p/Nup159p, an essential nucleoporin of Saccharomyces cerevisiae
    • Del Priore V., Heath C., Snay C., MacMillan A., Gorsch L., Dagher S., Cole C. A structure/function analysis of Rat7p/Nup159p, an essential nucleoporin of Saccharomyces cerevisiae. J. Cell Sci. 110:1997;2987-2999
    • (1997) J. Cell Sci. , vol.110 , pp. 2987-2999
    • Del Priore, V.1    Heath, C.2    Snay, C.3    MacMillan, A.4    Gorsch, L.5    Dagher, S.6    Cole, C.7
  • 7
    • 0031058188 scopus 로고    scopus 로고
    • Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
    • delaFortelle E., Bricogne G. Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol. 276:1997;472-494
    • (1997) Methods Enzymol. , vol.276 , pp. 472-494
    • Delafortelle, E.1    Bricogne, G.2
  • 8
    • 1842610010 scopus 로고    scopus 로고
    • Nucleocytoplasmic transport: Integrating mRNA production and turnover with export through the nuclear pore
    • Dimaano C., Ullman K.S. Nucleocytoplasmic transport. integrating mRNA production and turnover with export through the nuclear pore Mol. Cell. Biol. 24:2004;3069-3076
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 3069-3076
    • Dimaano, C.1    Ullman, K.S.2
  • 9
    • 0037884974 scopus 로고    scopus 로고
    • An early function during transcription for the yeast mRNA export factor Dbp5p/Rat8p suggested by its genetic and physical interactions with transcription factor IIH components
    • Estruch F., Cole C.N. An early function during transcription for the yeast mRNA export factor Dbp5p/Rat8p suggested by its genetic and physical interactions with transcription factor IIH components. Mol. Biol. Cell. 14:2003;1664-1676
    • (2003) Mol. Biol. Cell , vol.14 , pp. 1664-1676
    • Estruch, F.1    Cole, C.N.2
  • 10
    • 0141995069 scopus 로고    scopus 로고
    • The nuclear pore complex: Nucleocytoplasmic transport and beyond
    • Fahrenkrog B., Aebi U. The nuclear pore complex. nucleocytoplasmic transport and beyond Nat. Rev. Mol. Cell Biol. 4:2003;757-766
    • (2003) Nat. Rev. Mol. Cell Biol. , vol.4 , pp. 757-766
    • Fahrenkrog, B.1    Aebi, U.2
  • 11
    • 1842813943 scopus 로고    scopus 로고
    • The nuclear pore complex: A jack of all trades?
    • Fahrenkrog B., Koser J., Aebi U. The nuclear pore complex. a jack of all trades? Trends Biochem. Sci. 29:2004;175-182
    • (2004) Trends Biochem. Sci. , vol.29 , pp. 175-182
    • Fahrenkrog, B.1    Koser, J.2    Aebi, U.3
  • 12
    • 0242558716 scopus 로고    scopus 로고
    • Beta propellers: Structural rigidity and functional diversity
    • Fulop V., Jones D.T. Beta propellers. structural rigidity and functional diversity Curr. Opin. Struct. Biol. 9:1999;715-721
    • (1999) Curr. Opin. Struct. Biol. , vol.9 , pp. 715-721
    • Fulop, V.1    Jones, D.T.2
  • 13
    • 0842288796 scopus 로고    scopus 로고
    • The Glc7p nuclear phosphatase promotes mRNA export by facilitating association of Mex67p with mRNA
    • Gilbert W., Guthrie C. The Glc7p nuclear phosphatase promotes mRNA export by facilitating association of Mex67p with mRNA. Mol. Cell. 13:2004;201-212
    • (2004) Mol. Cell , vol.13 , pp. 201-212
    • Gilbert, W.1    Guthrie, C.2
  • 14
    • 2542445427 scopus 로고    scopus 로고
    • ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information
    • Glaser F., Pupko T., Paz I., Bell R.E., Bechor-Shental D., Martz E., Ben-Tal N. ConSurf. identification of functional regions in proteins by surface-mapping of phylogenetic information Bioinformatics. 19:2003;163-164
    • (2003) Bioinformatics , vol.19 , pp. 163-164
    • Glaser, F.1    Pupko, T.2    Paz, I.3    Bell, R.E.4    Bechor-Shental, D.5    Martz, E.6    Ben-Tal, N.7
  • 15
    • 0029047324 scopus 로고
    • A conditional allele of the novel repeat-containing yeast nucleoporin RAT7/NUP159 causes both rapid cessation of mRNA export and reversible clustering of nuclear pore complexes
    • Gorsch L.C., Dockendorff T.C., Cole C.N. A conditional allele of the novel repeat-containing yeast nucleoporin RAT7/NUP159 causes both rapid cessation of mRNA export and reversible clustering of nuclear pore complexes. J. Cell Biol. 129:1995;939-955
    • (1995) J. Cell Biol. , vol.129 , pp. 939-955
    • Gorsch, L.C.1    Dockendorff, T.C.2    Cole, C.N.3
  • 16
    • 0036672039 scopus 로고    scopus 로고
    • The three-dimensional structure of the autoproteolytic, nuclear pore-targeting domain of the human nucleoporin Nup98
    • Hodel A.E., Hodel M.R., Griffis E.R., Hennig K.A., Ratner G.A., Xu S., Powers M.A. The three-dimensional structure of the autoproteolytic, nuclear pore-targeting domain of the human nucleoporin Nup98. Mol. Cell. 10:2002;347-358
    • (2002) Mol. Cell , vol.10 , pp. 347-358
    • Hodel, A.E.1    Hodel, M.R.2    Griffis, E.R.3    Hennig, K.A.4    Ratner, G.A.5    Xu, S.6    Powers, M.A.7
  • 17
    • 0033569962 scopus 로고    scopus 로고
    • Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells
    • Hodge C.A., Colot H.V., Stafford P., Cole C.N. Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells. EMBO J. 18:1999;5778-5788
    • (1999) EMBO J. , vol.18 , pp. 5778-5788
    • Hodge, C.A.1    Colot, H.V.2    Stafford, P.3    Cole, C.N.4
  • 18
    • 0028363764 scopus 로고
    • Drosophila kinesin minimal motor domain expressed in Escherichia coli. Purification and kinetic characterization
    • Huang T.G., Hackney D.D. Drosophila kinesin minimal motor domain expressed in Escherichia coli. Purification and kinetic characterization. J. Biol. Chem. 269:1994;16493-16501
    • (1994) J. Biol. Chem. , vol.269 , pp. 16493-16501
    • Huang, T.G.1    Hackney, D.D.2
  • 19
    • 3042836378 scopus 로고    scopus 로고
    • A molecular link between SR protein dephosphorylation and mRNA export
    • Huang Y., Yario T.A., Steitz J.A. A molecular link between SR protein dephosphorylation and mRNA export. Proc. Natl. Acad. Sci. USA. 101:2004;9666-9670
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9666-9670
    • Huang, Y.1    Yario, T.A.2    Steitz, J.A.3
  • 20
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A. 47:1991;110-119
    • (1991) Acta Crystallogr. a , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard4
  • 21
    • 0032787876 scopus 로고    scopus 로고
    • Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused
    • Kapust R.B., Waugh D.S. Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused. Protein Sci. 8:1999;1668-1674
    • (1999) Protein Sci. , vol.8 , pp. 1668-1674
    • Kapust, R.B.1    Waugh, D.S.2
  • 22
    • 0034595501 scopus 로고    scopus 로고
    • Enhanced genome annotation using structural profiles in the program 3D-PSSM
    • Kelley L.A., MacCallum R.M., Sternberg M.J. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol. 299:2000;499-520
    • (2000) J. Mol. Biol. , vol.299 , pp. 499-520
    • Kelley, L.A.1    MacCallum, R.M.2    Sternberg, M.J.3
  • 25
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin L.J., Bryson K., Jones D.T. The PSIPRED protein structure prediction server. Bioinformatics. 16:2000;404-405
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 26
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 27
    • 0037154964 scopus 로고    scopus 로고
    • A conserved mRNA export machinery coupled to pre-mRNA splicing
    • Reed R., Hurt E. A conserved mRNA export machinery coupled to pre-mRNA splicing. Cell. 108:2002;523-531
    • (2002) Cell , vol.108 , pp. 523-531
    • Reed, R.1    Hurt, E.2
  • 28
    • 1542344429 scopus 로고    scopus 로고
    • DEAD-box proteins: The driving forces behind RNA metabolism
    • Rocak S., Linder P. DEAD-box proteins. the driving forces behind RNA metabolism Nat. Rev. Mol. Cell Biol. 5:2004;232-241
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 232-241
    • Rocak, S.1    Linder, P.2
  • 30
    • 9844219734 scopus 로고    scopus 로고
    • Yeast heat shock mRNAs are exported through a distinct pathway defined by Rip1p
    • Saavedra C.A., Hammell C.M., Heath C.V., Cole C.N. Yeast heat shock mRNAs are exported through a distinct pathway defined by Rip1p. Genes Dev. 11:1997;2845-2856
    • (1997) Genes Dev. , vol.11 , pp. 2845-2856
    • Saavedra, C.A.1    Hammell, C.M.2    Heath, C.V.3    Cole, C.N.4
  • 32
    • 0032080030 scopus 로고    scopus 로고
    • Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export
    • Snay-Hodge C.A., Colot H.V., Goldstein A.L., Cole C.N. Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export. EMBO J. 17:1998;2663-2676
    • (1998) EMBO J. , vol.17 , pp. 2663-2676
    • Snay-Hodge, C.A.1    Colot, H.V.2    Goldstein, A.L.3    Cole, C.N.4
  • 33
    • 0035794237 scopus 로고    scopus 로고
    • The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex
    • Strawn L.A., Shen T., Wente S.R. The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex. J. Biol. Chem. 276:2001;6445-6452
    • (2001) J. Biol. Chem. , vol.276 , pp. 6445-6452
    • Strawn, L.A.1    Shen, T.2    Wente, S.R.3
  • 34
    • 0038697629 scopus 로고    scopus 로고
    • The interplay of nuclear mRNP assembly, mRNA surveillance and export
    • Stutz F., Izaurralde E. The interplay of nuclear mRNP assembly, mRNA surveillance and export. Trends Cell Biol. 13:2003;319-327
    • (2003) Trends Cell Biol. , vol.13 , pp. 319-327
    • Stutz, F.1    Izaurralde, E.2
  • 35
    • 0029122732 scopus 로고
    • Identification of a novel nuclear pore-associated protein as a functional target of the HIV-1 Rev protein in yeast
    • Stutz F., Neville M., Rosbash M. Identification of a novel nuclear pore-associated protein as a functional target of the HIV-1 Rev protein in yeast. Cell. 82:1995;495-506
    • (1995) Cell , vol.82 , pp. 495-506
    • Stutz, F.1    Neville, M.2    Rosbash, M.3
  • 36
    • 0030827396 scopus 로고    scopus 로고
    • The yeast nucleoporin rip1p contributes to multiple export pathways with no essential role for its FG-repeat region
    • Stutz F., Kantor J., Zhang D., McCarthy T., Neville M., Rosbash M. The yeast nucleoporin rip1p contributes to multiple export pathways with no essential role for its FG-repeat region. Genes Dev. 11:1997;2857-2868
    • (1997) Genes Dev. , vol.11 , pp. 2857-2868
    • Stutz, F.1    Kantor, J.2    Zhang, D.3    McCarthy, T.4    Neville, M.5    Rosbash, M.6
  • 37
    • 0037604556 scopus 로고    scopus 로고
    • Peering through the pore: Nuclear pore complex structure, assembly, and function
    • Suntharalingam M., Wente S.R. Peering through the pore. nuclear pore complex structure, assembly, and function Dev. Cell. 4:2003;775-789
    • (2003) Dev. Cell , vol.4 , pp. 775-789
    • Suntharalingam, M.1    Wente, S.R.2
  • 38
    • 0033229885 scopus 로고    scopus 로고
    • Evaluation of macromolecular electron-density map quality using the correlation of local r.m.s. density
    • Terwilliger T.C., Berendzen J. Evaluation of macromolecular electron-density map quality using the correlation of local r.m.s. density. Acta Crystallogr. D Biol. Crystallogr. 55:1999;1872-1877
    • (1999) Acta Crystallogr. D Biol. Crystallogr. , vol.55 , pp. 1872-1877
    • Terwilliger, T.C.1    Berendzen, J.2
  • 39
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface. flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25:1997;4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 41
    • 0033522118 scopus 로고    scopus 로고
    • Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: Implications for nuclear transport
    • Vetter I.R., Nowak C., Nishimoto T., Kuhlmann J., Wittinghofer A. Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue. implications for nuclear transport Nature. 398:1999;39-46
    • (1999) Nature , vol.398 , pp. 39-46
    • Vetter, I.R.1    Nowak, C.2    Nishimoto, T.3    Kuhlmann, J.4    Wittinghofer, A.5
  • 42
    • 0037459085 scopus 로고    scopus 로고
    • Regulating access to the genome: Nucleocytoplasmic transport throughout the cell cycle
    • Weis K. Regulating access to the genome. nucleocytoplasmic transport throughout the cell cycle Cell. 112:2003;441-451
    • (2003) Cell , vol.112 , pp. 441-451
    • Weis, K.1
  • 43
    • 0036500482 scopus 로고    scopus 로고
    • The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm
    • Zhao J., Jin S.B., Bjorkroth B., Wieslander L., Daneholt B. The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm. EMBO J. 21:2002;1177-1187
    • (2002) EMBO J. , vol.21 , pp. 1177-1187
    • Zhao, J.1    Jin, S.B.2    Bjorkroth, B.3    Wieslander, L.4    Daneholt, B.5


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