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Volumn , Issue , 2005, Pages 531-542

Random forest similarity for protein-protein interaction prediction from multiple sources

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL DATA; CLASSIFICATION ALGORITHM; FALSE POSITIVE RATES; HIGH NOISE; HIGH THROUGHPUT; MISSING VALUES; MULTIPLE SOURCE; PROTEIN-PROTEIN INTERACTIONS; RANDOM FORESTS; SIMILARITY ESTIMATE; SIMILARITY MATRIX; TRAINING SETS;

EID: 15944418607     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (171)

References (22)
  • 1
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • Von Mering C, et al., Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417:399-403, 2002.
    • (2002) Nature , vol.417 , pp. 399-403
    • Von Mering, C.1
  • 2
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein interaction data obtained from different sources
    • Bader GD, Hogue CWV. Analyzing yeast protein-protein interaction data obtained from different sources. Nature Biotechnology 20:991-997, 2003.
    • (2003) Nature Biotechnology , vol.20 , pp. 991-997
    • Bader, G.D.1    Hogue, C.W.V.2
  • 3
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz P, et al., A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature. 403(6770):623-7, 2000.
    • (2000) Nature , vol.403 , Issue.6770 , pp. 623-627
    • Uetz, P.1
  • 4
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactomc
    • 98
    • Ito T, et al., A comprehensive two-hybrid analysis to explore the yeast protein interactomc., Proc Natl Acad Sci, 10;98(8):4569-74, 2001.
    • (2001) Proc Natl Acad Sci , vol.10 , Issue.8 , pp. 4569-4574
    • Ito, T.1
  • 5
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin AC, et al., Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature. 415(6868): 141-7, 2002.
    • (2002) Nature , vol.415 , Issue.6868 , pp. 141-147
    • Gavin, A.C.1
  • 6
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho Y, et al., Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415(6868), 2002.
    • (2002) Nature , vol.415 , Issue.6868
    • Ho, Y.1
  • 7
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright AJ, et al., Protein interaction maps for complete genomes based on gene fusion events. Nature. 402(6757):86-90, 1999.
    • (1999) Nature , vol.402 , Issue.6757 , pp. 86-90
    • Enright, A.J.1
  • 8
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Huh WK, et al, Global analysis of protein localization in budding yeast. Nature. 425(6959):686-91, 2003.
    • (2003) Nature , vol.425 , Issue.6959 , pp. 686-691
    • Huh, W.K.1
  • 9
    • 0142215475 scopus 로고    scopus 로고
    • Global analysis of protein expression in yeast
    • Ghaemmaghami S, et al., Global analysis of protein expression in yeast. Nature. 425(6959):737-41, 2003.
    • (2003) Nature , vol.425 , Issue.6959 , pp. 737-741
    • Ghaemmaghami, S.1
  • 10
    • 10744230485 scopus 로고    scopus 로고
    • Global mapping of the yeast genetic interaction network
    • Tong A.H.Y. et al. Global Mapping of the Yeast Genetic Interaction Network. Science. 303: 808-813, 2004.
    • (2004) Science , vol.303 , pp. 808-813
    • Tong, A.H.Y.1
  • 11
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting protein- protein interactions from genomic data
    • R Jansen, et al., A Bayesian networks approach for predicting protein- protein interactions from genomic data, Science 302: 449-53, 2003.
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.1
  • 12
    • 2942541277 scopus 로고    scopus 로고
    • Predicting co-complexed protein pairs using genomic and proteomic data integration
    • Lan V. Zhang, et al., Predicting co-complexed protein pairs using genomic and proteomic data integration, BMC Bioinformatics. 5 (1): 38, 2004.
    • (2004) BMC Bioinformatics , vol.5 , Issue.1 , pp. 38
    • Lan, V.Z.1
  • 13
    • 1842507531 scopus 로고    scopus 로고
    • A statistical framework for combining and interpreting, proteomic datasets
    • Gilchrist MA, et al. A statistical framework for combining and interpreting .proteomic datasets. Bioinformatics. 20(5):689-700, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.5 , pp. 689-700
    • Gilchrist, M.A.1
  • 14
    • 0036799752 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • Deng M, et al., Inferring domain-domain interactions from protein-protein interactions. Genome Res. 12(10): 1540-8, 2002.
    • (2002) Genome Res. , vol.12 , Issue.10 , pp. 1540-1548
    • Deng, M.1
  • 15
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in saccharomyces cerevisiae
    • Lee et al., Transcriptional Regulatory Networks in Saccharomyces cerevisiae, Science 298:799-804, 2002.
    • (2002) Science , vol.298 , pp. 799-804
    • Lee1
  • 16
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • The Gene Ontology Consortium, Dec
    • Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium (2000), Nature Genet. 25: 25-29, Dec. 2003.
    • (2000) Nature Genet. , vol.25 , pp. 25-29
  • 17
    • 0034747028 scopus 로고    scopus 로고
    • DIP: The database of interacting proteins: 2001 update
    • Xenarios I, et al., DIP: The Database of Interacting Proteins: 2001 update, Nucleic Acids Res. 29(1):239-41, 2001.
    • (2001) Nucleic Acids Res. , vol.29 , Issue.1 , pp. 239-241
    • Xenarios, I.1
  • 18
    • 10744226222 scopus 로고    scopus 로고
    • Computational discovery of gene modules and regulatory networks
    • Bar-Joseph Z, et al., Computational discovery of gene modules and regulatory networks, Nat Biotechnol. (11): 1337-42, 2003.
    • (2003) Nat Biotechnol. , Issue.11 , pp. 1337-1342
    • Bar-Joseph, Z.1
  • 19
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman, L. Random Forests, Machine learning, 45, 5-32, 2001.
    • (2001) Machine Learning , vol.45 , pp. 5-32
    • Breiman, L.1
  • 20
    • 0029012079 scopus 로고
    • Ste5: A meeting place for MAP kinases and their associates
    • Elion, E.A. Ste5: a meeting place for MAP kinases and their associates, Trends Cell Biol. 5, 322-7, 1995.
    • (1995) Trends Cell Biol. , vol.5 , pp. 322-327
    • Elion, E.A.1
  • 22
    • 85133386144 scopus 로고    scopus 로고
    • Distance metric learning, with application to clustering with side-information
    • E.P. Xing, et al. Distance Metric Learning, with application to Clustering with side-information, NIPS, 2002.
    • (2002) NIPS
    • Xing, E.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.