-
1
-
-
1542334001
-
Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3′ end processing
-
in press
-
Ahn SH, Kim M, Buratowski S (2004) Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3′ end processing. Mol Cell 13, in press
-
(2004)
Mol Cell
, vol.13
-
-
Ahn, S.H.1
Kim, M.2
Buratowski, S.3
-
2
-
-
0034667949
-
High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: Roles in promoter proximal pausing and transcription elongation
-
Andrulis ED, Guzman E, Doring P, Werner J, Lis JT (2000) High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev 14: 2635-2649
-
(2000)
Genes Dev
, vol.14
, pp. 2635-2649
-
-
Andrulis, E.D.1
Guzman, E.2
Doring, P.3
Werner, J.4
Lis, J.T.5
-
3
-
-
0035895294
-
Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae
-
Barilla D, Lee BA, Proudfoot NJ (2001) Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 98: 445-450
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 445-450
-
-
Barilla, D.1
Lee, B.A.2
Proudfoot, N.J.3
-
4
-
-
0032502825
-
Coupling termination of transcription to messenger RNA maturation in yeast
-
Birse CE, Minvielle-Sebastia L, Lee BA, Keller W, Proudfoot NJ (1998) Coupling termination of transcription to messenger RNA maturation in yeast. Science 280: 298-301
-
(1998)
Science
, vol.280
, pp. 298-301
-
-
Birse, C.E.1
Minvielle-Sebastia, L.2
Lee, B.A.3
Keller, W.4
Proudfoot, N.J.5
-
5
-
-
0028316883
-
Cellular localization of RNA14p and RNA15p, two yeast proteins involved in mRNA stability
-
Bonneaud N, Minvielle-Sebastia L, Cullin C, Lacroute F (1994) Cellular localization of RNA14p and RNA15p, two yeast proteins involved in mRNA stability. J Cell Sci 107: 913-921
-
(1994)
J Cell Sci
, vol.107
, pp. 913-921
-
-
Bonneaud, N.1
Minvielle-Sebastia, L.2
Cullin, C.3
Lacroute, F.4
-
6
-
-
0035027953
-
A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription
-
Brewster NK, Johnston GC, Singer RA (2001) A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription. Mol Cell Biol 21: 3491-3502
-
(2001)
Mol Cell Biol
, vol.21
, pp. 3491-3502
-
-
Brewster, N.K.1
Johnston, G.C.2
Singer, R.A.3
-
7
-
-
0035947082
-
Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination
-
Calvo O, Manley JL (2001) Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination. Mol Cell 7: 1013-1023
-
(2001)
Mol Cell
, vol.7
, pp. 1013-1023
-
-
Calvo, O.1
Manley, J.L.2
-
8
-
-
0037948220
-
Strange bedfellows: Polyadenylation factors at the promoter
-
Calvo O, Manley JL (2003) Strange bedfellows: polyadenylation factors at the promoter. Genes Dev 17: 1321-1327
-
(2003)
Genes Dev
, vol.17
, pp. 1321-1327
-
-
Calvo, O.1
Manley, J.L.2
-
9
-
-
0034255028
-
Protein-interaction modules that organize nuclear function: FF domains of CA150 bind the phosphoCTD of RNA polymerase II
-
Carty SM, Goldstrohm AC, Sune C, Garcia-Blanco MA, Greenleaf AL (2000) Protein-interaction modules that organize nuclear function: FF domains of CA150 bind the phosphoCTD of RNA polymerase II. Proc Natl Acad Sci USA 97: 9015-9020
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 9015-9020
-
-
Carty, S.M.1
Goldstrohm, A.C.2
Sune, C.3
Garcia-Blanco, M.A.4
Greenleaf, A.L.5
-
10
-
-
0032907104
-
A complex containing RNA polymerase II, Paf1p, Cdc73p, Hpr1p, and Ccr4p plays a role in protein kinase C signaling
-
Chang M, French-Cornay D, Fan HY, Klein H, Denis CL, Jaehning JA (1999) A complex containing RNA polymerase II, Paf1p, Cdc73p, Hpr1p, and Ccr4p plays a role in protein kinase C signaling. Mol Cell Biol 19: 1056-1067
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1056-1067
-
-
Chang, M.1
French-Cornay, D.2
Fan, H.Y.3
Klein, H.4
Denis, C.L.5
Jaehning, J.A.6
-
11
-
-
0031439267
-
The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability
-
Chavez S, Aguilera A (1997) The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability. Genes Dev 11: 3459-3470
-
(1997)
Genes Dev
, vol.11
, pp. 3459-3470
-
-
Chavez, S.1
Aguilera, A.2
-
12
-
-
0035893314
-
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain
-
Cho EJ, Kobor MS, Kim M, Greenblatt J, Buratowski S (2001) Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain. Genes Dev 15: 3319-3329
-
(2001)
Genes Dev
, vol.15
, pp. 3319-3329
-
-
Cho, E.J.1
Kobor, M.S.2
Kim, M.3
Greenblatt, J.4
Buratowski, S.5
-
13
-
-
0031453408
-
mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain
-
Cho EJ, Takagi T, Moore CR, Buratowski S (1997) mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain. Genes Dev 11: 3319-3326
-
(1997)
Genes Dev
, vol.11
, pp. 3319-3326
-
-
Cho, E.J.1
Takagi, T.2
Moore, C.R.3
Buratowski, S.4
-
14
-
-
0030670094
-
A CTD function linking transcription to splicing
-
Corden JL, Patturajan M (1997) A CTD function linking transcription to splicing. Trends Biochem Sci 22: 413-416
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 413-416
-
-
Corden, J.L.1
Patturajan, M.2
-
15
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
Cramer P, Bushnell DA, Fu J, Gnatt AL, Maier-Davis B, Thompson NE, Burgess RR, Edwards AM, David PR, Kornberg RD (2000) Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288: 640-649
-
(2000)
Science
, vol.288
, pp. 640-649
-
-
Cramer, P.1
Bushnell, D.A.2
Fu, J.3
Gnatt, A.L.4
Maier-Davis, B.5
Thompson, N.E.6
Burgess, R.R.7
Edwards, A.M.8
David, P.R.9
Kornberg, R.D.10
-
16
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer P, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 292: 1863-1876
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
17
-
-
0030798246
-
Transcription factor TFIID recruits factor CPSF for formation of 3′ end of mRNA
-
Dantonel JC, Murthy KG, Manley JL, Tora L (1997) Transcription factor TFIID recruits factor CPSF for formation of 3′ end of mRNA. Nature 389: 399-402
-
(1997)
Nature
, vol.389
, pp. 399-402
-
-
Dantonel, J.C.1
Murthy, K.G.2
Manley, J.L.3
Tora, L.4
-
18
-
-
0036863611
-
A role for SSU72 in balancing RNA polymerase II transcription elongation and termination
-
Dichtl B, Blank D, Ohnacker M, Friedlein A, Roeder D, Langen H, Keller W (2002a) A role for SSU72 in balancing RNA polymerase II transcription elongation and termination. Mol Cell 10: 1139-1150
-
(2002)
Mol Cell
, vol.10
, pp. 1139-1150
-
-
Dichtl, B.1
Blank, D.2
Ohnacker, M.3
Friedlein, A.4
Roeder, D.5
Langen, H.6
Keller, W.7
-
19
-
-
0036682601
-
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination
-
Dichtl B, Blank D, Sadowski M, Hubner W, Weiser S, Keller W (2002b) Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination. EMBO J 21: 4125-4135
-
(2002)
EMBO J
, vol.21
, pp. 4125-4135
-
-
Dichtl, B.1
Blank, D.2
Sadowski, M.3
Hubner, W.4
Weiser, S.5
Keller, W.6
-
20
-
-
0035369625
-
Multiple transcript cleavage precedes polymerase release in termination by RNA polymerase II
-
Dye MJ, Proudfoot NJ (2001) Multiple transcript cleavage precedes polymerase release in termination by RNA polymerase II. Cell 105: 669-681
-
(2001)
Cell
, vol.105
, pp. 669-681
-
-
Dye, M.J.1
Proudfoot, N.J.2
-
21
-
-
0035796454
-
Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN
-
Formosa T, Eriksson P, Wittmeyer J, Ginn J, Yu Y, Stillman DJ (2001) Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN. EMBO J 20: 3506-3517
-
(2001)
EMBO J
, vol.20
, pp. 3506-3517
-
-
Formosa, T.1
Eriksson, P.2
Wittmeyer, J.3
Ginn, J.4
Yu, Y.5
Stillman, D.J.6
-
22
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Hofert C, Schelder M, Brajenovic M, Ruffner H (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
-
23
-
-
0028018945
-
Purification, cloning, and characterization of a human coactivator, PC4, that mediates transcriptional activation of class II genes
-
Ge H, Roeder RG (1994) Purification, cloning, and characterization of a human coactivator, PC4, that mediates transcriptional activation of class II genes. Cell 78: 513-523
-
(1994)
Cell
, vol.78
, pp. 513-523
-
-
Ge, H.1
Roeder, R.G.2
-
24
-
-
0033679905
-
The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay
-
Gonzalez CI, Ruiz-Echevarria MJ, Vasudevan S, Henry MF, Peltz SW (2000) The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay. Mol Cell 5: 489-499
-
(2000)
Mol Cell
, vol.5
, pp. 489-499
-
-
Gonzalez, C.I.1
Ruiz-Echevarria, M.J.2
Vasudevan, S.3
Henry, M.F.4
Peltz, S.W.5
-
25
-
-
0035933149
-
Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I
-
Gross S, Moore C (2001) Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I. Proc Natl Acad Sci USA 98: 6080-6085
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 6080-6085
-
-
Gross, S.1
Moore, C.2
-
26
-
-
0345373987
-
Functional interactions between the transcription and mRNA 3′ end processing machineries mediated by Ssu72 and Sub1
-
He X, Khan AU, Cheng H, Pappas Jr DL, Hampsey M, Moore CL (2003) Functional interactions between the transcription and mRNA 3′ end processing machineries mediated by Ssu72 and Sub1. Genes Dev 17: 1030-1042
-
(2003)
Genes Dev
, vol.17
, pp. 1030-1042
-
-
He, X.1
Khan, A.U.2
Cheng, H.3
Pappas Jr., D.L.4
Hampsey, M.5
Moore, C.L.6
-
27
-
-
0029786889
-
A yeast transcriptional stimulatory protein similar to human PC4
-
Henry NL, Bushnell DA, Kornberg RD (1996) A yeast transcriptional stimulatory protein similar to human PC4. J Biol Chem 271: 21842-21847
-
(1996)
J Biol Chem
, vol.271
, pp. 21842-21847
-
-
Henry, N.L.1
Bushnell, D.A.2
Kornberg, R.D.3
-
28
-
-
0032480229
-
RNA polymerase II is an essential mRNA polyadenylation factor
-
Hirose Y, Manley JL (1998) RNA polymerase II is an essential mRNA polyadenylation factor. Nature 395: 93-96
-
(1998)
Nature
, vol.395
, pp. 93-96
-
-
Hirose, Y.1
Manley, J.L.2
-
29
-
-
0033563098
-
Phosphorylated RNA polymerase II stimulates pre-mRNA splicing
-
Hirose Y, Tacke R, Manley JL (1999) Phosphorylated RNA polymerase II stimulates pre-mRNA splicing. Genes Dev 13: 1234-1239
-
(1999)
Genes Dev
, vol.13
, pp. 1234-1239
-
-
Hirose, Y.1
Tacke, R.2
Manley, J.L.3
-
30
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415: 180-183
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
-
31
-
-
0036645687
-
The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability
-
Jimeno S, Rondon AG, Luna R, Aguilera A (2002) The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability. EMBO J 21: 3526-3535
-
(2002)
EMBO J
, vol.21
, pp. 3526-3535
-
-
Jimeno, S.1
Rondon, A.G.2
Luna, R.3
Aguilera, A.4
-
32
-
-
0029014106
-
The coactivator p15 (PC4) initiates transcriptional activation during TFIIA-TFIID-promoter complex formation
-
Kaiser K, Stelzer G, Meisterernst M (1995) The coactivator p15 (PC4) initiates transcriptional activation during TFIIA-TFIID-promoter complex formation. EMBO J 14: 3520-3527
-
(1995)
EMBO J
, vol.14
, pp. 3520-3527
-
-
Kaiser, K.1
Stelzer, G.2
Meisterernst, M.3
-
33
-
-
0034667805
-
Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster
-
Kaplan CD, Morris JR, Wu C, Winston F (2000) Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster. Genes Dev 14: 2623-2634
-
(2000)
Genes Dev
, vol.14
, pp. 2623-2634
-
-
Kaplan, C.D.1
Morris, J.R.2
Wu, C.3
Winston, F.4
-
34
-
-
0141557763
-
Bur1 kinase is required for efficient transcription elongation by RNA polymerase II
-
Keogh MC, Podolny V, Buratowski S (2003) Bur1 kinase is required for efficient transcription elongation by RNA polymerase II. Mol Cell Biol 23: 7005-7018
-
(2003)
Mol Cell Biol
, vol.23
, pp. 7005-7018
-
-
Keogh, M.C.1
Podolny, V.2
Buratowski, S.3
-
35
-
-
0030803670
-
Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3′-end formation in yeast
-
Kessler MM, Henry MF, Shen E, Zhao J, Gross S, Silver PA, Moore CL (1997) Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3′-end formation in yeast. Genes Dev 11: 2545-2556
-
(1997)
Genes Dev
, vol.11
, pp. 2545-2556
-
-
Kessler, M.M.1
Henry, M.F.2
Shen, E.3
Zhao, J.4
Gross, S.5
Silver, P.A.6
Moore, C.L.7
-
36
-
-
0029872724
-
Yeast SUB1 is a suppressor of TFIIB mutations and has homology to the human co-activator PC4
-
Knaus R, Pollock R, Guarente L (1996) Yeast SUB1 is a suppressor of TFIIB mutations and has homology to the human co-activator PC4. EMBO J 15: 1933-1940
-
(1996)
EMBO J
, vol.15
, pp. 1933-1940
-
-
Knaus, R.1
Pollock, R.2
Guarente, L.3
-
37
-
-
0034307008
-
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
-
Komarnitsky P, Cho EJ, Buratowski S (2000) Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev 14: 2452-2460
-
(2000)
Genes Dev
, vol.14
, pp. 2452-2460
-
-
Komarnitsky, P.1
Cho, E.J.2
Buratowski, S.3
-
38
-
-
0036787862
-
RNA polymerase II elongation factors of Saccharomyces cerevisiae: A targeted proteomics approach
-
Krogan NJ, Kim M, Ahn SH, Zhong G, Kobor MS, Cagney G, Emili A, Shilatifard A, Buratowski S, Greenblatt JF (2002) RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach. Mol Cell Biol 22: 6979-6992
-
(2002)
Mol Cell Biol
, vol.22
, pp. 6979-6992
-
-
Krogan, N.J.1
Kim, M.2
Ahn, S.H.3
Zhong, G.4
Kobor, M.S.5
Cagney, G.6
Emili, A.7
Shilatifard, A.8
Buratowski, S.9
Greenblatt, J.F.10
-
39
-
-
0036829415
-
Intron status and 3′-end formation control cotranscriptional export of mRNA
-
Lei EP, Silver PA (2002) Intron status and 3′-end formation control cotranscriptional export of mRNA. Genes Dev 16: 2761-2766
-
(2002)
Genes Dev
, vol.16
, pp. 2761-2766
-
-
Lei, E.P.1
Silver, P.A.2
-
40
-
-
0036285707
-
Functional interaction of yeast pre-mRNA 3′ end processing factors with RNA polymerase II
-
Licatalosi DD, Geiger G, Minet M, Schroeder S, Cilli K, McNeil JB, Bentley DL (2002) Functional interaction of yeast pre-mRNA 3′ end processing factors with RNA polymerase II. Mol Cell 9: 1101-1111
-
(2002)
Mol Cell
, vol.9
, pp. 1101-1111
-
-
Licatalosi, D.D.1
Geiger, G.2
Minet, M.3
Schroeder, S.4
Cilli, K.5
McNeil, J.B.6
Bentley, D.L.7
-
41
-
-
0034764781
-
Genetic interactions of Spt4-Spt5 and TFIIS with the RNA polymerase II CTD and CTD modifying enzymes in Saccharomyces cerevisiae
-
Lindstrom DL, Hartzog GA (2001) Genetic interactions of Spt4-Spt5 and TFIIS with the RNA polymerase II CTD and CTD modifying enzymes in Saccharomyces cerevisiae. Genetics 159: 487-497
-
(2001)
Genetics
, vol.159
, pp. 487-497
-
-
Lindstrom, D.L.1
Hartzog, G.A.2
-
42
-
-
0037313160
-
Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins
-
Lindstrom DL, Squazzo SL, Muster N, Burckin TA, Wachter KC, Emigh CA, McCleery JA, Yates 3rd JR, Hartzog GA (2003) Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins. Mol Cell Biol 23: 1368-1378
-
(2003)
Mol Cell Biol
, vol.23
, pp. 1368-1378
-
-
Lindstrom, D.L.1
Squazzo, S.L.2
Muster, N.3
Burckin, T.A.4
Wachter, K.C.5
Emigh, C.A.6
McCleery, J.A.7
Yates III, J.R.8
Hartzog, G.A.9
-
43
-
-
0035846138
-
Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly
-
Luo ML, Zhou Z, Magni K, Christoforides C, Rappsilber J, Mann M, Reed R (2001) Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly. Nature 413: 644-647
-
(2001)
Nature
, vol.413
, pp. 644-647
-
-
Luo, M.L.1
Zhou, Z.2
Magni, K.3
Christoforides, C.4
Rappsilber, J.5
Mann, M.6
Reed, R.7
-
44
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis T, Reed R (2002) An extensive network of coupling among gene expression machines. Nature 416: 499-506
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
45
-
-
0036829064
-
Nuclear coupling: RNA processing reaches back to transcription
-
Manley JL (2002) Nuclear coupling: RNA processing reaches back to transcription. Nat Struct Biol 9: 790-791
-
(2002)
Nat Struct Biol
, vol.9
, pp. 790-791
-
-
Manley, J.L.1
-
46
-
-
15644372864
-
5′-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II
-
McCracken S, Fong N, Rosonina E, Yankulov K, Brothers G, Siderovski D, Hessel A, Foster S, Shuman S, Bentley DL (1997a) 5′-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II. Genes Dev 11: 3306-3318
-
(1997)
Genes Dev
, vol.11
, pp. 3306-3318
-
-
McCracken, S.1
Fong, N.2
Rosonina, E.3
Yankulov, K.4
Brothers, G.5
Siderovski, D.6
Hessel, A.7
Foster, S.8
Shuman, S.9
Bentley, D.L.10
-
47
-
-
0031037856
-
The C-terminal domain of RNA polymerase II couples mRNA processing to transcription
-
McCracken S, Fong N, Yankulov K, Ballantyne S, Pan G, Greenblatt J, Patterson SD, Wickens M, Bentley DL (1997b) The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature 385: 357-361
-
(1997)
Nature
, vol.385
, pp. 357-361
-
-
McCracken, S.1
Fong, N.2
Yankulov, K.3
Ballantyne, S.4
Pan, G.5
Greenblatt, J.6
Patterson, S.D.7
Wickens, M.8
Bentley, D.L.9
-
48
-
-
0032535492
-
Control of cleavage site selection during mRNA 3′ end formation by a yeast hnRNP
-
Minvielle-Sebastia L, Beyer K, Krecic AM, Hector RE, Swanson MS, Keller W (1998) Control of cleavage site selection during mRNA 3′ end formation by a yeast hnRNP. EMBO J 17: 7454-7468
-
(1998)
EMBO J
, vol.17
, pp. 7454-7468
-
-
Minvielle-Sebastia, L.1
Beyer, K.2
Krecic, A.M.3
Hector, R.E.4
Swanson, M.S.5
Keller, W.6
-
49
-
-
0028589505
-
RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3′-end processing factor
-
Minvielle-Sebastia L, Preker PJ, Keller W (1994) RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3′-end processing factor. Science 266: 1702-1705
-
(1994)
Science
, vol.266
, pp. 1702-1705
-
-
Minvielle-Sebastia, L.1
Preker, P.J.2
Keller, W.3
-
50
-
-
0034704145
-
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II
-
Morris DP, Greenleaf AL (2000) The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II. J Biol Chem 275: 39935-39943
-
(2000)
J Biol Chem
, vol.275
, pp. 39935-39943
-
-
Morris, D.P.1
Greenleaf, A.L.2
-
51
-
-
0036123253
-
Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex
-
Mueller CL, Jaehning JA (2002) Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex. Mol Cell Biol 22: 1971-1980
-
(2002)
Mol Cell Biol
, vol.22
, pp. 1971-1980
-
-
Mueller, C.L.1
Jaehning, J.A.2
-
52
-
-
0041856309
-
Organization and function of APT, a sub-complex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and snoRNA 3′ ends
-
Nedea E, He X, Kim M, Pootoolal J, Zhong G, Canadien V, Hughes T, Buratowski S, Moore CL, Greenblatt J (2003) Organization and function of APT, a sub-complex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and snoRNA 3′ ends. J Biol Chem 278: 33000-33010
-
(2003)
J Biol Chem
, vol.278
, pp. 33000-33010
-
-
Nedea, E.1
He, X.2
Kim, M.3
Pootoolal, J.4
Zhong, G.5
Canadien, V.6
Hughes, T.7
Buratowski, S.8
Moore, C.L.9
Greenblatt, J.10
-
53
-
-
0037044807
-
The poly(A) signal, without the assistance of any downstream element, directs RNA polymerase II to pause in vivo and then to release stochastically from the template
-
Orozco IJ, Kim SJ, Martinson HG (2002) The poly(A) signal, without the assistance of any downstream element, directs RNA polymerase II to pause in vivo and then to release stochastically from the template. J Biol Chem 277: 42899-42911
-
(2002)
J Biol Chem
, vol.277
, pp. 42899-42911
-
-
Orozco, I.J.1
Kim, S.J.2
Martinson, H.G.3
-
54
-
-
0033566129
-
The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
-
Orphanides G, Wu WH, Lane WS, Hampsey M, Reinberg D (1999) The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 400: 284-288
-
(1999)
Nature
, vol.400
, pp. 284-288
-
-
Orphanides, G.1
Wu, W.H.2
Lane, W.S.3
Hampsey, M.4
Reinberg, D.5
-
55
-
-
0037205456
-
Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5
-
Pei Y, Shuman S (2002) Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5. J Biol Chem 277: 19639-19648
-
(2002)
J Biol Chem
, vol.277
, pp. 19639-19648
-
-
Pei, Y.1
Shuman, S.2
-
56
-
-
0035918157
-
DSIF and NELF interact with RNA polymerase II elongation complex and HIV-1 Tat stimulates P-TEFb-mediated phosphorylation of RNA polymerase II and DSIF during transcription elongation
-
Ping YH, Rana TM (2001) DSIF and NELF interact with RNA polymerase II elongation complex and HIV-1 Tat stimulates P-TEFb-mediated phosphorylation of RNA polymerase II and DSIF during transcription elongation. J Biol Chem 276: 12951-12958
-
(2001)
J Biol Chem
, vol.276
, pp. 12951-12958
-
-
Ping, Y.H.1
Rana, T.M.2
-
57
-
-
0010173139
-
A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination
-
Piruat JI, Aguilera A (1998) A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination. EMBO J 17: 4859-4872
-
(1998)
EMBO J
, vol.17
, pp. 4859-4872
-
-
Piruat, J.I.1
Aguilera, A.2
-
58
-
-
0036241663
-
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
-
Pokholok DK, Hannett NM, Young RA (2002) Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. Mol Cell 9: 799-809
-
(2002)
Mol Cell
, vol.9
, pp. 799-809
-
-
Pokholok, D.K.1
Hannett, N.M.2
Young, R.A.3
-
59
-
-
0037154967
-
Integrating mRNA processing with transcription
-
Proudfoot NJ, Furger A, Dye MJ (2002) Integrating mRNA processing with transcription. Cell 108: 501-512
-
(2002)
Cell
, vol.108
, pp. 501-512
-
-
Proudfoot, N.J.1
Furger, A.2
Dye, M.J.3
-
60
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E, Bragado-Nilsson E, Wilm M, Seraphin B (2001) The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24: 218-229
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
61
-
-
0037370399
-
The study of macromolecular complexes by quantitative proteomics
-
Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R (2003) The study of macromolecular complexes by quantitative proteomics. Nat Genet 33: 349-355
-
(2003)
Nat Genet
, vol.33
, pp. 349-355
-
-
Ranish, J.A.1
Yi, E.C.2
Leslie, D.M.3
Purvine, S.O.4
Goodlett, D.R.5
Eng, J.6
Aebersold, R.7
-
62
-
-
0037154964
-
A conserved mRNA export machinery coupled to pre-mRNA splicing
-
Reed R, Hurt E (2002) A conserved mRNA export machinery coupled to pre-mRNA splicing. Cell 108: 523-531
-
(2002)
Cell
, vol.108
, pp. 523-531
-
-
Reed, R.1
Hurt, E.2
-
63
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030-1032
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
64
-
-
0033986862
-
Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II
-
Rodriguez CR, Cho EJ, Keogh MC, Moore CL, Greenleaf AL, Buratowski S (2000) Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II. Mol Cell Biol 20: 104-112
-
(2000)
Mol Cell Biol
, vol.20
, pp. 104-112
-
-
Rodriguez, C.R.1
Cho, E.J.2
Keogh, M.C.3
Moore, C.L.4
Greenleaf, A.L.5
Buratowski, S.6
-
65
-
-
0037126594
-
The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4
-
Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF (2001) The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. EMBO J 20: 7137-7148
-
(2001)
EMBO J
, vol.20
, pp. 7137-7148
-
-
Roguev, A.1
Schaft, D.2
Shevchenko, A.3
Pijnappel, W.W.4
Wilm, M.5
Aasland, R.6
Stewart, A.F.7
-
66
-
-
0037415686
-
Molecular evidence for a positive role of Spt4 in transcription elongation
-
Rondon AG, Garcia-Rubio M, Gonzalez-Barrera S, Aguilera A (2003) Molecular evidence for a positive role of Spt4 in transcription elongation. EMBO J 22: 612-620
-
(2003)
EMBO J
, vol.22
, pp. 612-620
-
-
Rondon, A.G.1
Garcia-Rubio, M.2
Gonzalez-Barrera, S.3
Aguilera, A.4
-
67
-
-
0036269973
-
Proteomics of the eukaryotic transcription machinery: Identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry
-
Sanders SL, Jennings J, Canutescu A, Link AJ, Weil PA (2002) Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol Cell Biol 22: 4723-4738
-
(2002)
Mol Cell Biol
, vol.22
, pp. 4723-4738
-
-
Sanders, S.L.1
Jennings, J.2
Canutescu, A.3
Link, A.J.4
Weil, P.A.5
-
68
-
-
0034307172
-
Dynamic association of capping enzymes with transcribing RNA polymerase II
-
Schroeder SC, Schwer B, Shuman S, Bentley D (2000) Dynamic association of capping enzymes with transcribing RNA polymerase II. Genes Dev 14: 2435-2440
-
(2000)
Genes Dev
, vol.14
, pp. 2435-2440
-
-
Schroeder, S.C.1
Schwer, B.2
Shuman, S.3
Bentley, D.4
-
69
-
-
0033788228
-
The ends of the affair: Capping and polyadenylation
-
Shatkin AJ, Manley JL (2000) The ends of the affair: capping and polyadenylation. Nat Struct Biol 7: 838-842
-
(2000)
Nat Struct Biol
, vol.7
, pp. 838-842
-
-
Shatkin, A.J.1
Manley, J.L.2
-
70
-
-
0037007217
-
The Paf1 complex physically and functionally associates with transcription elongation factors in vivo
-
Squazzo SL, Costa PJ, Lindstrom DL, Kumer KE, Simic R, Jennings JL, Link AJ, Arndt KM, Hartzog GA (2002) The Paf1 complex physically and functionally associates with transcription elongation factors in vivo. EMBO J 21: 1764-1774
-
(2002)
EMBO J
, vol.21
, pp. 1764-1774
-
-
Squazzo, S.L.1
Costa, P.J.2
Lindstrom, D.L.3
Kumer, K.E.4
Simic, R.5
Jennings, J.L.6
Link, A.J.7
Arndt, K.M.8
Hartzog, G.A.9
-
71
-
-
0037118052
-
TREX is a conserved complex coupling transcription with messenger RNA export
-
Strasser K, Masuda S, Mason P, Pfannstiel J, Oppizzi M, Rodriguez-Navarro S, Rondon AG, Aguilera A, Struhl K, Reed R, Hurt E (2002) TREX is a conserved complex coupling transcription with messenger RNA export. Nature 417: 304-308
-
(2002)
Nature
, vol.417
, pp. 304-308
-
-
Strasser, K.1
Masuda, S.2
Mason, P.3
Pfannstiel, J.4
Oppizzi, M.5
Rodriguez-Navarro, S.6
Rondon, A.G.7
Aguilera, A.8
Struhl, K.9
Reed, R.10
Hurt, E.11
-
72
-
-
0029978328
-
Synthetic enhancement of a TFIIB defect by a mutation in SSU72, an essential yeast gene encoding a novel protein that affects transcription start site selection in vivo
-
Sun ZW, Hampsey M (1996) Synthetic enhancement of a TFIIB defect by a mutation in SSU72, an essential yeast gene encoding a novel protein that affects transcription start site selection in vivo. Mol Cell Biol 16: 1557-1566
-
(1996)
Mol Cell Biol
, vol.16
, pp. 1557-1566
-
-
Sun, Z.W.1
Hampsey, M.2
-
73
-
-
0034785864
-
Mechanism of poly(A) signal transduction to RNA polymerase II in vitro
-
Tran DP, Kim SJ, Park NJ, Jew TM, Martinson HG (2001) Mechanism of poly(A) signal transduction to RNA polymerase II in vitro. Mol Cell Biol 21: 7495-7508
-
(2001)
Mol Cell Biol
, vol.21
, pp. 7495-7508
-
-
Tran, D.P.1
Kim, S.J.2
Park, N.J.3
Jew, T.M.4
Martinson, H.G.5
-
74
-
-
0033638442
-
FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH
-
Wada T, Orphanides G, Hasegawa J, Kim DK, Shima D, Yamaguchi Y, Fukuda A, Hisatake K, Oh S, Reinberg D, Handa H (2000) FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH. Mol Cell 5: 1067-1072
-
(2000)
Mol Cell
, vol.5
, pp. 1067-1072
-
-
Wada, T.1
Orphanides, G.2
Hasegawa, J.3
Kim, D.K.4
Shima, D.5
Yamaguchi, Y.6
Fukuda, A.7
Hisatake, K.8
Oh, S.9
Reinberg, D.10
Handa, H.11
-
75
-
-
14444275279
-
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
-
Wada T, Takagi T, Yamaguchi Y, Ferdous A, Imai T, Hirose S, Sugimoto S, Yano K, Hartzog GA, Winston F, Buratowski S, Handa H (1998a) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev 12: 343-356
-
(1998)
Genes Dev
, vol.12
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
Hirose, S.6
Sugimoto, S.7
Yano, K.8
Hartzog, G.A.9
Winston, F.10
Buratowski, S.11
Handa, H.12
-
76
-
-
0032534814
-
Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro
-
Wada T, Takagi T, Yamaguchi Y, Watanabe D, Handa H (1998b) Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro. EMBO J 17: 7395-7403
-
(1998)
EMBO J
, vol.17
, pp. 7395-7403
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Watanabe, D.4
Handa, H.5
-
77
-
-
0033566042
-
Transcription elongation factor hSPT5 stimulates mRNA capping
-
Wen Y, Shatkin AJ (1999) Transcription elongation factor hSPT5 stimulates mRNA capping. Genes Dev 13: 1774-1779
-
(1999)
Genes Dev
, vol.13
, pp. 1774-1779
-
-
Wen, Y.1
Shatkin, A.J.2
-
78
-
-
0026641776
-
Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection
-
Winston F, Carlson M (1992) Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection. Trends Genet 8: 387-391
-
(1992)
Trends Genet
, vol.8
, pp. 387-391
-
-
Winston, F.1
Carlson, M.2
-
79
-
-
0033551430
-
Spt16 and Pob3 of Saccharomyces cerevisiae form an essential, abundant heterodimer that is nuclear, chromatin-associated, and copurifies with DNA polymerase alpha
-
Wittmeyer J, Joss L, Formosa T (1999) Spt16 and Pob3 of Saccharomyces cerevisiae form an essential, abundant heterodimer that is nuclear, chromatin-associated, and copurifies with DNA polymerase alpha. Biochemistry 38: 8961-8971
-
(1999)
Biochemistry
, vol.38
, pp. 8961-8971
-
-
Wittmeyer, J.1
Joss, L.2
Formosa, T.3
-
80
-
-
0032871078
-
Mutational analysis of yeast TFIIB. A functional relationship between Ssu72 and Sub1/Tsp1 defined by allele-specific interactions with TFIIB
-
Wu WH, Pinto I, Chen BS, Hampsey M (1999) Mutational analysis of yeast TFIIB. A functional relationship between Ssu72 and Sub1/Tsp1 defined by allele-specific interactions with TFIIB. Genetics 153: 643-652
-
(1999)
Genetics
, vol.153
, pp. 643-652
-
-
Wu, W.H.1
Pinto, I.2
Chen, B.S.3
Hampsey, M.4
-
81
-
-
0033515521
-
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
-
Yamaguchi Y, Takagi T, Wada T, Yano K, Furuya A, Sugimoto S, Hasegawa J, Handa H (1999) NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97: 41-51
-
(1999)
Cell
, vol.97
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
Hasegawa, J.7
Handa, H.8
-
82
-
-
0030660264
-
Mammalian capping enzyme complements mutant Saccharomyces cerevisiae lacking mRNA guanylyltransferase and selectively binds the elongating form of RNA polymerase II
-
Yue Z, Maldonado E, Pillutla R, Cho H, Reinberg D, Shatkin AJ (1997) Mammalian capping enzyme complements mutant Saccharomyces cerevisiae lacking mRNA guanylyltransferase and selectively binds the elongating form of RNA polymerase II. Proc Natl Acad Sci USA 94: 12898-12903
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 12898-12903
-
-
Yue, Z.1
Maldonado, E.2
Pillutla, R.3
Cho, H.4
Reinberg, D.5
Shatkin, A.J.6
-
83
-
-
0020108296
-
DNA sequence required for efficient transcription termination in yeast
-
Zaret KS, Sherman F (1982) DNA sequence required for efficient transcription termination in yeast. Cell 28: 563-573
-
(1982)
Cell
, vol.28
, pp. 563-573
-
-
Zaret, K.S.1
Sherman, F.2
-
84
-
-
0025915378
-
Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase II largest subunit
-
Zhang J, Corden JL (1991) Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase II largest subunit. J Biol Chem 266: 2290-2296
-
(1991)
J Biol Chem
, vol.266
, pp. 2290-2296
-
-
Zhang, J.1
Corden, J.L.2
|