-
1
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl, T. (1993) Instability and decay of the primary structure of DNA, Nature 362, 709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
2
-
-
0004228157
-
-
ASM Press, Washington, DC
-
Friedberg, E. C., Walker, G. C., and Seide, W. (1995) DNA Repair and Mutagenesis, ASM Press, Washington, DC.
-
(1995)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Seide, W.3
-
3
-
-
0033520969
-
Quality control by DNA repair
-
Lindahl, T., and Wood, R. D. (1999) Quality control by DNA repair, Science 286, 1897-1905.
-
(1999)
Science
, vol.286
, pp. 1897-1905
-
-
Lindahl, T.1
Wood, R.D.2
-
4
-
-
0030861915
-
DNA glycosylases in the base excision repair of DNA
-
Krokan, H. E., Standal, R., and Slupphaug, G. (1997) DNA glycosylases in the base excision repair of DNA, Biochem. J. 325, 1-16.
-
(1997)
Biochem. J.
, vol.325
, pp. 1-16
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
5
-
-
0031574192
-
Base excision repair enzyme family portrait: Integrating the structure and chemistry of an entire DNA repair pathway
-
Parikh, S. S., Mol, C. D., and Tainer, J. A. (1997) Base excision repair enzyme family portrait: integrating the structure and chemistry of an entire DNA repair pathway, Structure 5, 1543-1550.
-
(1997)
Structure
, vol.5
, pp. 1543-1550
-
-
Parikh, S.S.1
Mol, C.D.2
Tainer, J.A.3
-
6
-
-
0001473891
-
Chemistry of glycosylases and endonucleases involved in base-excision repair
-
David, S. S., and Williams, S. D. (1998) Chemistry of glycosylases and endonucleases involved in base-excision repair, Chem. Rev. 98, 1221-1261.
-
(1998)
Chem. Rev.
, vol.98
, pp. 1221-1261
-
-
David, S.S.1
Williams, S.D.2
-
7
-
-
0027324378
-
Mutagenesis by 8-oxoguanine: An enemy within
-
Grollman, A. P., and Moriya, M. (1993) Mutagenesis by 8-oxoguanine: an enemy within, Trends Genet. 9, 246-249.
-
(1993)
Trends Genet.
, vol.9
, pp. 246-249
-
-
Grollman, A.P.1
Moriya, M.2
-
8
-
-
4243545125
-
Oxidative nucleobase modifications leading to strand scission
-
Burrows, C. J., and Muller, J. G. (1998) Oxidative nucleobase modifications leading to strand scission, Chem. Rev. 98, 1109-1151.
-
(1998)
Chem. Rev.
, vol.98
, pp. 1109-1151
-
-
Burrows, C.J.1
Muller, J.G.2
-
9
-
-
0025981359
-
Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
-
Shibutani, S., Takeshita, M., and Grollman, A. P. (1991) Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG, Nature 349, 431-434.
-
(1991)
Nature
, vol.349
, pp. 431-434
-
-
Shibutani, S.1
Takeshita, M.2
Grollman, A.P.3
-
10
-
-
0026452281
-
Genetic effects of oxidative DNA damage: Comparative mutagenesis of 7,8-dihydro-8-oxo-guanine and 7,8-dihydro-8-oxoadenine in Escherichia coli
-
Wood, M. L., Esteve, A., Morningstar, M. L., Kuziemo, G. M., and Essigman, J. M. (1992) Genetic effects of oxidative DNA damage: comparative mutagenesis of 7,8-dihydro-8-oxo-guanine and 7,8-dihydro-8-oxoadenine in Escherichia coli, Nucleic Acids Res. 20, 6023-6032.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6023-6032
-
-
Wood, M.L.1
Esteve, A.2
Morningstar, M.L.3
Kuziemo, G.M.4
Essigman, J.M.5
-
11
-
-
0026701365
-
The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine)
-
Michaels, M. L., and Miller, J. H. (1992) The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine), J. Bacteriol. 174, 6321-6325.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6321-6325
-
-
Michaels, M.L.1
Miller, J.H.2
-
12
-
-
0026447255
-
A repair system for 8-oxo-7,8-dihydrodeoxyguanine
-
Michaels, M. L., Tchou, J., Grollman, A. P., and Miller, J. H. (1992) A repair system for 8-oxo-7,8-dihydrodeoxyguanine, Biochemistry 31, 10964-10968.
-
(1992)
Biochemistry
, vol.31
, pp. 10964-10968
-
-
Michaels, M.L.1
Tchou, J.2
Grollman, A.P.3
Miller, J.H.4
-
13
-
-
0028933674
-
Functional cooperation of MutT, MutM, and MutY proteins in preventing caused by spontaneous oxidation of guanine nucleotides in Escherichia coli
-
Tajiri, T., Maki, H., and Sekiguchi, M. (1995) Functional cooperation of MutT, MutM, and MutY proteins in preventing caused by spontaneous oxidation of guanine nucleotides in Escherichia coli, Mutat. Res. 366, 257-267.
-
(1995)
Mutat. Res.
, vol.366
, pp. 257-267
-
-
Tajiri, T.1
Maki, H.2
Sekiguchi, M.3
-
14
-
-
0026513966
-
MutT protein specifically hydrolyzes a potent mutagenic substrate for DNA synthesis
-
Maki, H., and Sekiguchi, M. (1992) MutT protein specifically hydrolyzes a potent mutagenic substrate for DNA synthesis, Nature 355, 273-275.
-
(1992)
Nature
, vol.355
, pp. 273-275
-
-
Maki, H.1
Sekiguchi, M.2
-
15
-
-
0032840464
-
Functional expression of hMYH, a human homolog of the Escherichia coli MutY protein
-
Slupska, M. M., Luther, W. M., Chiang, J.-H., Yang, H., and Miller, J. H. (1999) Functional expression of hMYH, a human homolog of the Escherichia coli MutY protein, J. Bacteriol. 181, 6210-6213.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6210-6213
-
-
Slupska, M.M.1
Luther, W.M.2
Chiang, J.-H.3
Yang, H.4
Miller, J.H.5
-
16
-
-
0030738194
-
Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase
-
Rosenquist, T. A., Zharkov, D. O., and Grollman, A. P. (1997) Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase, Proc. Natl. Acad. Sci. U.S.A. 94, 7429-7434.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 7429-7434
-
-
Rosenquist, T.A.1
Zharkov, D.O.2
Grollman, A.P.3
-
17
-
-
0036312376
-
Hypoxia induces mitochondrial DNA damage and stimulates expression of a DNA repair enzyme, the Escherichia coli MutY DNA glycosylase homolog (MYH), in vivo, in the rat brain
-
Lee, H.-M., Wang, C., Hu, Z., Greeley, G. H., Makalowski, W., Hellmich, H. L., and Englander, E. W. (2002) Hypoxia induces mitochondrial DNA damage and stimulates expression of a DNA repair enzyme, the Escherichia coli MutY DNA glycosylase homolog (MYH), in vivo, in the rat brain, J. Neurochem. 80, 928-937.
-
(2002)
J. Neurochem.
, vol.80
, pp. 928-937
-
-
Lee, H.-M.1
Wang, C.2
Hu, Z.3
Greeley, G.H.4
Makalowski, W.5
Hellmich, H.L.6
Englander, E.W.7
-
18
-
-
0035253515
-
Enhanced activity of adenine-DNA glycosylase (Myh) by apurinic/apyrimidinic endonuclease (Apel) in mammalian base excision repair of an A/GO mismatch
-
Yang, H., Clendenin, W. M., Wong, D., Demple, B., Slupska, M. M., Chiang, J.-H., and Miller, J. H. (2001) Enhanced activity of adenine-DNA glycosylase (Myh) by apurinic/apyrimidinic endonuclease (Apel) in mammalian base excision repair of an A/GO mismatch, Nucleic Acids Res. 29, 743-752.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 743-752
-
-
Yang, H.1
Clendenin, W.M.2
Wong, D.3
Demple, B.4
Slupska, M.M.5
Chiang, J.-H.6
Miller, J.H.7
-
19
-
-
0026703168
-
Escherichia coli MutY protein has both N-glycosylase and apurinic/apyrimidinic endonuclease activities on A·C and A·G mispairs
-
Tsai-Wu, J.-J., Liu, H.-F., and Lu, A.-L. (1992) Escherichia coli MutY protein has both N-glycosylase and apurinic/apyrimidinic endonuclease activities on A·C and A·G mispairs, Proc. Natl. Acad. Sci. U.S.A. 89, 8779-8783.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 8779-8783
-
-
Tsai-Wu, J.-J.1
Liu, H.-F.2
Lu, A.-L.3
-
20
-
-
0032553004
-
Single-turnover and pre-steady-state kinetics of the reaction of the adenine glycosylase MutY with mismatch-containing DNA substrates
-
Porello, S. L., Leyes, A. E., and David, S. S. (1998) Single-turnover and pre-steady-state kinetics of the reaction of the adenine glycosylase MutY with mismatch-containing DNA substrates, Biochemistry 37, 14756-14764.
-
(1998)
Biochemistry
, vol.37
, pp. 14756-14764
-
-
Porello, S.L.1
Leyes, A.E.2
David, S.S.3
-
21
-
-
0035863770
-
Efficient recognition of substrates and substrate analogs by the adenine glycosylase MutY requires the C-terminal domain
-
Chmiel, N. H., Golinelli, M. P., Francis, A. W., and David, S. S. (2001) Efficient recognition of substrates and substrate analogs by the adenine glycosylase MutY requires the C-terminal domain, Nucleic Acids Res. 29, 553-564.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 553-564
-
-
Chmiel, N.H.1
Golinelli, M.P.2
Francis, A.W.3
David, S.S.4
-
22
-
-
0043032741
-
Adenine release is fast in MutY-catalyzed hydrolysis of G:A and 8-oxo-G:A DNA mismatches
-
McCann, J. A. B., and Berti, P. J. (2003) Adenine release is fast in MutY-catalyzed hydrolysis of G:A and 8-oxo-G:A DNA mismatches, J. Biol. Chem. 278, 29587-29592.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29587-29592
-
-
McCann, J.A.B.1
Berti, P.J.2
-
23
-
-
0037205473
-
Presteady-state analysis of a single catalytic turnover by Escherichia coli uracil-DNA glycosylase reveals a "pinch-pull-push" mechanism
-
Wong, I., Lundquist, A. J., Bernards, A. S., and Mosbaugh, D. W. (2002) Presteady-state analysis of a single catalytic turnover by Escherichia coli uracil-DNA glycosylase reveals a "pinch-pull-push" mechanism, J. Biol. Chem. 277, 19424-19432.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 19424-19432
-
-
Wong, I.1
Lundquist, A.J.2
Bernards, A.S.3
Mosbaugh, D.W.4
-
24
-
-
0037199967
-
Effects of hydrogen bonding within a damaged base pair on the activity of wild-type and DNA-intercalating mutants of human alkyladenine DNA glycosylase
-
Vallur, A. C., Feller, J. A., Abner, C. W., Tran, R. K., and Bloom, L. B. (2002) Effects of hydrogen bonding within a damaged base pair on the activity of wild-type and DNA-intercalating mutants of human alkyladenine DNA glycosylase, J. Biol. Chem. 277, 31673-31678.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 31673-31678
-
-
Vallur, A.C.1
Feller, J.A.2
Abner, C.W.3
Tran, R.K.4
Bloom, L.B.5
-
25
-
-
0141790433
-
Recognition and removal of oxidized guanines in duplex DNA by the base excision repair enzymes hOGG1, yOGG1, and yOGG2
-
Leipold, M. D., Workman, H., Muller, J. G., Burrows, C. J., and David, S. S. (2003) Recognition and removal of oxidized guanines in duplex DNA by the base excision repair enzymes hOGG1, yOGG1, and yOGG2, Biochemistry 38, 11373-11381.
-
(2003)
Biochemistry
, vol.38
, pp. 11373-11381
-
-
Leipold, M.D.1
Workman, H.2
Muller, J.G.3
Burrows, C.J.4
David, S.S.5
-
26
-
-
0034693039
-
Biphasic kinetics of the human DNA repair protein MED1 (MBD4), a mismatch-specific DNA N-glycosylase
-
Petronzelli, F., Riccio, A., Markham, G. D., Seeholzer, S. H., Stoerker, J., Guenuardi, M., Yeung, A. T., Matsumoto, Y., and Bellacosa, A. (2000) Biphasic kinetics of the human DNA repair protein MED1 (MBD4), a mismatch-specific DNA N-glycosylase, J. Biol. Chem. 275, 32422-32429.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 32422-32429
-
-
Petronzelli, F.1
Riccio, A.2
Markham, G.D.3
Seeholzer, S.H.4
Stoerker, J.5
Guenuardi, M.6
Yeung, A.T.7
Matsumoto, Y.8
Bellacosa, A.9
-
27
-
-
0033178275
-
Substrate recognition by Escherichia coli MutY using substrate analogs
-
Chepanoske, C. L., Porello, S. L., Fujiwara, T., Sugiyama, H., and David, S. S. (1999) Substrate recognition by Escherichia coli MutY using substrate analogs, Nucleic Acids Res. 27, 3197-3204.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3197-3204
-
-
Chepanoske, C.L.1
Porello, S.L.2
Fujiwara, T.3
Sugiyama, H.4
David, S.S.5
-
28
-
-
0026684849
-
Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA
-
Michaels, M. L., Cruz, C., Grollman, A. P., and Miller, J. H. (1992) Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA, Proc. Natl. Acad. Sci. U.S.A. 89, 7022-7025.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 7022-7025
-
-
Michaels, M.L.1
Cruz, C.2
Grollman, A.P.3
Miller, J.H.4
-
29
-
-
0036478899
-
Inherited variants of MYH associated with somatic G:C to T:A mutations in colorectal tumors
-
Al-Tassan, N., Chmiel, N. H., Maynard, J., Fleming, N., Livingston, A. L., Williams, G. T., Hodges, A. K., Davies, D. R., David, S. S., Sampson, J. R., and Cheadle, J. P. (2002) Inherited variants of MYH associated with somatic G:C to T:A mutations in colorectal tumors, Nat. Genet. 30, 227-232.
-
(2002)
Nat. Genet.
, vol.30
, pp. 227-232
-
-
Al-Tassan, N.1
Chmiel, N.H.2
Maynard, J.3
Fleming, N.4
Livingston, A.L.5
Williams, G.T.6
Hodges, A.K.7
Davies, D.R.8
David, S.S.9
Sampson, J.R.10
Cheadle, J.P.11
-
30
-
-
0030004207
-
Cloning and sequencing a human homolog (hMYH) of the Escherichia coli mutY gene whose function is required for the repair of oxidative DNA damage
-
Slupska, M. M., Baikalov, C., Luther, W. M., Chiang, J.-H., Wei, Y.-F., and Miller, J. H. (1996) Cloning and sequencing a human homolog (hMYH) of the Escherichia coli mutY gene whose function is required for the repair of oxidative DNA damage, J. Bacteriol. 178, 3885-3892.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3885-3892
-
-
Slupska, M.M.1
Baikalov, C.2
Luther, W.M.3
Chiang, J.-H.4
Wei, Y.-F.5
Miller, J.H.6
-
31
-
-
0037459233
-
Insight into the functional consequences of inherited variants of the hMYH adenine glycosylase associated with colorectal cancer: Complementation assays with hMYH variants and pre-steady-state kinetics of the corresponding mutated E. coli enzymes
-
Chmiel, N. H., Livingston, A. L., and David, S. S. (2003) Insight into the functional consequences of inherited variants of the hMYH adenine glycosylase associated with colorectal cancer: complementation assays with hMYH variants and pre-steady-state kinetics of the corresponding mutated E. coli enzymes, J. Mol. Biol. 327, 431-443.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 431-443
-
-
Chmiel, N.H.1
Livingston, A.L.2
David, S.S.3
-
32
-
-
0036848267
-
Biallelic germline mutations in MYH predispose to multiple colorectal adenoma and somatic G:C to T:A mutations
-
Jones, S., Emmerson, P., Maynard, J., Best, J. M., Jordan, S., Williams, G. T., Sampson, J. R., and Cheadle, J. P. (2002) Biallelic germline mutations in MYH predispose to multiple colorectal adenoma and somatic G:C to T:A mutations, Hum. Mol. Genet. 11, 2961-2967.
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 2961-2967
-
-
Jones, S.1
Emmerson, P.2
Maynard, J.3
Best, J.M.4
Jordan, S.5
Williams, G.T.6
Sampson, J.R.7
Cheadle, J.P.8
-
33
-
-
0038501052
-
Autosomal recessive colorectal adenomatous polyposis due to inherited mutations of MYH
-
Sampson, J. R., Dolwani, S., Jones, S., Eccles, D., Ellis, A., Evans, G., Frayling, I., Jordan, S., Maher, E. R., Mak, T., Maynard, J., Pigatto, F., Shaw, J., and Cheadle, J. P. (2003) Autosomal recessive colorectal adenomatous polyposis due to inherited mutations of MYH, Lancet 362, 39-41.
-
(2003)
Lancet
, vol.362
, pp. 39-41
-
-
Sampson, J.R.1
Dolwani, S.2
Jones, S.3
Eccles, D.4
Ellis, A.5
Evans, G.6
Frayling, I.7
Jordan, S.8
Maher, E.R.9
Mak, T.10
Maynard, J.11
Pigatto, F.12
Shaw, J.13
Cheadle, J.P.14
-
34
-
-
0141960200
-
Exposing the MYtH about base excision repair and human genetic disease
-
Cheadle, J. P., and Sampson, J. R. (2003) Exposing the MYtH about base excision repair and human genetic disease, Hum. Mol. Genet. 12, R159-R165.
-
(2003)
Hum. Mol. Genet.
, vol.12
-
-
Cheadle, J.P.1
Sampson, J.R.2
-
35
-
-
0037468517
-
Multiple colorectal adenomas, classic adenomatous polyposis, and germ-line mutations in MYH
-
Seiber, O. M., Lipton, L., Crabtree, M., Heinimann, K., Figdalgo, P., Phillips, R., Bisgaard, M.-L., Orntoft, T. F., Aaltonen, L. A., Hodgson, S. V., Thomas, H. J. W., and Tomlinson, I. P. M. (2003) Multiple colorectal adenomas, classic adenomatous polyposis, and germ-line mutations in MYH, N. Engl. J. Med. 348, 791-799.
-
(2003)
N. Engl. J. Med.
, vol.348
, pp. 791-799
-
-
Seiber, O.M.1
Lipton, L.2
Crabtree, M.3
Heinimann, K.4
Figdalgo, P.5
Phillips, R.6
Bisgaard, M.-L.7
Orntoft, T.F.8
Aaltonen, L.A.9
Hodgson, S.V.10
Thomas, H.J.W.11
Tomlinson, I.P.M.12
-
36
-
-
13244261067
-
The potential for increased clinical sensitivity in genetic testing for polyposis colorectal cancer through the analysis of MYH mutations in North American patients
-
Eliason, K., Hendrickson, B. C., Judkins, T., Norton, M., Leclair, B., Lyon, E., Ward, B., Noll, W., and Scholl, T. (2005) The potential for increased clinical sensitivity in genetic testing for polyposis colorectal cancer through the analysis of MYH mutations in North American patients, J. Med. Genet. 42, 95-96.
-
(2005)
J. Med. Genet.
, vol.42
, pp. 95-96
-
-
Eliason, K.1
Hendrickson, B.C.2
Judkins, T.3
Norton, M.4
Leclair, B.5
Lyon, E.6
Ward, B.7
Noll, W.8
Scholl, T.9
-
37
-
-
0042670003
-
Inherited defects in the DNA glycosylase MYH cause multiple colorectal adenoma and carcinoma
-
Cheadle, J. P., Dolwani, S., and Sampson, J. R. (2003) Inherited defects in the DNA glycosylase MYH cause multiple colorectal adenoma and carcinoma, Carcinogenesis 24, 1281-1282.
-
(2003)
Carcinogenesis
, vol.24
, pp. 1281-1282
-
-
Cheadle, J.P.1
Dolwani, S.2
Sampson, J.R.3
-
38
-
-
4644335014
-
Colorectal cancer and inherited mutations in base-excision repair
-
Chow, E., Thirlwell, C., Macrae, F., and Lipton, L. (2004) Colorectal cancer and inherited mutations in base-excision repair, Lancet Oncol. 5, 600-606.
-
(2004)
Lancet Oncol.
, vol.5
, pp. 600-606
-
-
Chow, E.1
Thirlwell, C.2
Macrae, F.3
Lipton, L.4
-
39
-
-
10744220394
-
Carcinogenesis in MYH-associated polyposis follows a distinct genetic pathway
-
Lipton, L., Halford, S. E. R., Johnson, V., Novelli, M. R., Jones, A., Cummings, C., Barclay, E., Sieber, O. M., Sadat, A., Bisgaard, M.-L., Hodgson, S. V., Aaltonen, L. A., Thomas, H. J. W., and Tomlinson, I. P. M. (2003) Carcinogenesis in MYH-associated polyposis follows a distinct genetic pathway, Cancer Res. 63, 7595-7599.
-
(2003)
Cancer Res.
, vol.63
, pp. 7595-7599
-
-
Lipton, L.1
Halford, S.E.R.2
Johnson, V.3
Novelli, M.R.4
Jones, A.5
Cummings, C.6
Barclay, E.7
Sieber, O.M.8
Sadat, A.9
Bisgaard, M.-L.10
Hodgson, S.V.11
Aaltonen, L.A.12
Thomas, H.J.W.13
Tomlinson, I.P.M.14
-
40
-
-
3543020359
-
The multiple colorectal adenoma phenotype and MYH, a excision repair gene
-
Lipton, L., and Tomlinson, I. P. M. (2004) The multiple colorectal adenoma phenotype and MYH, a excision repair gene, Clin. Gastroenterol. Hepatol. 2, 633-638.
-
(2004)
Clin. Gastroenterol. Hepatol.
, vol.2
, pp. 633-638
-
-
Lipton, L.1
Tomlinson, I.P.M.2
-
41
-
-
0031763884
-
MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily
-
Guan, Y., Manuel, R. C., Arvai, A. S., Parikh, S. S., Mol, C. D., Miller, J. H., Lloyd, R. S., and Tainer, J. A. (1998) MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily, Nat. Struct. Biol. 5, 1058-1064.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 1058-1064
-
-
Guan, Y.1
Manuel, R.C.2
Arvai, A.S.3
Parikh, S.S.4
Mol, C.D.5
Miller, J.H.6
Lloyd, R.S.7
Tainer, J.A.8
-
42
-
-
0042342532
-
A mechanistic perspective on the chemistry of DNA repair glycosylases
-
Stivers, J. T., and Jiang, Y. L. (2003) A mechanistic perspective on the chemistry of DNA repair glycosylases, Chem. Rev. 103, 2729-2759.
-
(2003)
Chem. Rev.
, vol.103
, pp. 2729-2759
-
-
Stivers, J.T.1
Jiang, Y.L.2
-
43
-
-
0037036363
-
Flipping duplex DNA inside out
-
Bernards, A. S., Miller, J. K., Bao, K. K., and Wong, I. (2002) Flipping duplex DNA inside out, J. Biol. Chem. 277, 20960-20964.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 20960-20964
-
-
Bernards, A.S.1
Miller, J.K.2
Bao, K.K.3
Wong, I.4
-
44
-
-
0036290411
-
Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase
-
Bjoras, M., Seeberg, E., Luna, L., Pearl, L. H., and Barrett, T. E. (2002) Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase, J. Mol. Biol. 317, 171-177.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 171-177
-
-
Bjoras, M.1
Seeberg, E.2
Luna, L.3
Pearl, L.H.4
Barrett, T.E.5
-
45
-
-
0036431531
-
Role of base flipping in specific recognition of damaged DNA by repair enzymes
-
Fuxreiter, M., Luo, N., Jedlovszky, P., Simon, L, and Osman, R. (2002) Role of base flipping in specific recognition of damaged DNA by repair enzymes, J. Mol. Biol. 323, 823-834.
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 823-834
-
-
Fuxreiter, M.1
Luo, N.2
Jedlovszky, P.3
Simon, L.4
Osman, R.5
-
46
-
-
0142126715
-
Human alkyladenine DNA glycosylase uses acid-base catalysis for selective excision of damaged purines
-
O'Brien, P. J., and Ellenberger, T. (2003) Human alkyladenine DNA glycosylase uses acid-base catalysis for selective excision of damaged purines, Biochemistry 42, 12418-12429.
-
(2003)
Biochemistry
, vol.42
, pp. 12418-12429
-
-
O'Brien, P.J.1
Ellenberger, T.2
-
47
-
-
0037112668
-
Human DNA glycosylases of the bacterial Fpg/ MutM superfamily: An alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA
-
Morland, I., Rolseth, V., Luna, L., Rognes, T., Bjoras, M., and Seeberg, E. (2002) Human DNA glycosylases of the bacterial Fpg/ MutM superfamily: an alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA, Nucleic Acids Res. 30, 4926-4936.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4926-4936
-
-
Morland, I.1
Rolseth, V.2
Luna, L.3
Rognes, T.4
Bjoras, M.5
Seeberg, E.6
-
48
-
-
1342304229
-
Structural basis for removing adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase
-
Fromme, J. C., Banerjee, A., Huang, S. J., and Verdine, G. L. (2004) Structural basis for removing adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase, Nature 427, 652-656.
-
(2004)
Nature
, vol.427
, pp. 652-656
-
-
Fromme, J.C.1
Banerjee, A.2
Huang, S.J.3
Verdine, G.L.4
-
49
-
-
0033580647
-
The C-terminal domain of the adenine-DNA glycosylase MutY confers specificity for 8-oxoguanine-adenine mispairs and may have evolved from MutT, an 8-oxo-dGTPase
-
Noll, D. M., Gogos, A., Granek, J. A., and Clarke, N. D. (1999) The C-terminal domain of the adenine-DNA glycosylase MutY confers specificity for 8-oxoguanine-adenine mispairs and may have evolved from MutT, an 8-oxo-dGTPase, Biochemistry 38, 6374-6379.
-
(1999)
Biochemistry
, vol.38
, pp. 6374-6379
-
-
Noll, D.M.1
Gogos, A.2
Granek, J.A.3
Clarke, N.D.4
-
50
-
-
0034720793
-
Structural similarities between MutT and the C-terminal domain of MutY
-
Volk, D. E., House, P. G., Thiviyanathan, V., Luxon, B. A., Zhang, S., Lloyd, R. S., and Gorenstein, D. G. (2000) Structural similarities between MutT and the C-terminal domain of MutY, Biochemistry 39, 7331-7336.
-
(2000)
Biochemistry
, vol.39
, pp. 7331-7336
-
-
Volk, D.E.1
House, P.G.2
Thiviyanathan, V.3
Luxon, B.A.4
Zhang, S.5
Lloyd, R.S.6
Gorenstein, D.G.7
-
51
-
-
0037925462
-
Structure of a trapped endonuclease III-DNA covalent intermediate
-
Fromme, J. C., and Verdine, G. L. (2003) Structure of a trapped endonuclease III-DNA covalent intermediate, EMBO J. 22, 3461-3471.
-
(2003)
EMBO J.
, vol.22
, pp. 3461-3471
-
-
Fromme, J.C.1
Verdine, G.L.2
-
53
-
-
0004136246
-
-
Cold Spring Harbor Press, Cold Spring Harbor, NY
-
Sambrook, J., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Maniatis, T.2
-
54
-
-
0017184389
-
A rapid and sensitive method for quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. (1976) A rapid and sensitive method for quantitation of microgram quantities of protein utilizing the principle of protein-dye binding, Anal. Biochem. 72, 248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
55
-
-
0029836886
-
Specific recognition of substrate analogs by the DNA mismatch repair enzyme MutY
-
Porello, S. L., Williams, S. D., Kuhn, H., Michaels, M. L., and David, S. S. (1996) Specific recognition of substrate analogs by the DNA mismatch repair enzyme MutY, J. Am. Chem. Soc. 118, 10684-10692.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 10684-10692
-
-
Porello, S.L.1
Williams, S.D.2
Kuhn, H.3
Michaels, M.L.4
David, S.S.5
-
56
-
-
0034254745
-
Positively charged residues within the iron-sulfur cluster loop of E. coli MutY participate in damage recognition and removal
-
Chepanoske, C. L., Golinelli, M. P., Williams, S. D., and David, S. S. (2000) Positively charged residues within the iron-sulfur cluster loop of E. coli MutY participate in damage recognition and removal, Arch. Biochem. Biophys. 380, 11-19.
-
(2000)
Arch. Biochem. Biophys.
, vol.380
, pp. 11-19
-
-
Chepanoske, C.L.1
Golinelli, M.P.2
Williams, S.D.3
David, S.S.4
-
57
-
-
0037151055
-
Escherichia coli apurinic-apyrimidinic endonucleases enhance the turnover of the adenine glycosylase MutY with G:A substrates
-
Pope, M. A., Porello, S. L., and David, S. S. (2002) Escherichia coli apurinic-apyrimidinic endonucleases enhance the turnover of the adenine glycosylase MutY with G:A substrates, J. Biol. Chem. 277, 22605-22615.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 22605-22615
-
-
Pope, M.A.1
Porello, S.L.2
David, S.S.3
-
59
-
-
1642494901
-
A residue in MutY important for catalysis indentified by photocross-linking and mass spectrometry
-
Chepanoske, C. L., Lukianova, O. L., Lombard, M., Golinelli-Cohen, M.-P., and David, S. S. (2004) A residue in MutY important for catalysis indentified by photocross-linking and mass spectrometry, Biochemistry 43, 651-662.
-
(2004)
Biochemistry
, vol.43
, pp. 651-662
-
-
Chepanoske, C.L.1
Lukianova, O.L.2
Lombard, M.3
Golinelli-Cohen, M.-P.4
David, S.S.5
-
60
-
-
0028933306
-
Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase
-
Slupphaug, G., Eftedal, I., Bharati, S., Helle, N. M., Haug, T., Levine, D. W., and Krokan, H. E. (1995) Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase, Biochemistry 34, 128-138.
-
(1995)
Biochemistry
, vol.34
, pp. 128-138
-
-
Slupphaug, G.1
Eftedal, I.2
Bharati, S.3
Helle, N.M.4
Haug, T.5
Levine, D.W.6
Krokan, H.E.7
-
61
-
-
0026323912
-
Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA
-
Record, M. T., Ha, J.-H., and Fisher, M. A. (1991) Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA, Methods Enzymol. 208, 291-343.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 291-343
-
-
Record, M.T.1
Ha, J.-H.2
Fisher, M.A.3
-
62
-
-
0034610336
-
Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG
-
Lau, A. Y., Wyatt, M. D., Glassner, B. J., Samson, L. D., and Ellenberger, T. (2000) Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG, Proc. Natl. Acad. Sci. U.S.A. 97, 13573-13578.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 13573-13578
-
-
Lau, A.Y.1
Wyatt, M.D.2
Glassner, B.J.3
Samson, L.D.4
Ellenberger, T.5
-
63
-
-
0032538337
-
Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: Mechanisms for nucleotide flipping and base excision
-
Lau, A. Y., Scharer, O. D., Samson, L. D., Verdine, G. L., and Ellenberger, T. (1998) Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision, Cell 95, 249-258.
-
(1998)
Cell
, vol.95
, pp. 249-258
-
-
Lau, A.Y.1
Scharer, O.D.2
Samson, L.D.3
Verdine, G.L.4
Ellenberger, T.5
-
64
-
-
0032167424
-
Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
-
Parikh, S. S., Mol, C. D., Slupphaug, G., Bharati, S., Krokan, H. E., and Tainer, J. A. (1998) Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA, EMBO J. 17, 5214-5226.
-
(1998)
EMBO J.
, vol.17
, pp. 5214-5226
-
-
Parikh, S.S.1
Mol, C.D.2
Slupphaug, G.3
Bharati, S.4
Krokan, H.E.5
Tainer, J.A.6
-
65
-
-
4444286415
-
Contribution of a conserved phenylalanine residue to the activity of Escherichia coli uracil DNA glycosylase
-
Shaw, R. W., Feller, J. A., and Bloom, L. B. (2004) Contribution of a conserved phenylalanine residue to the activity of Escherichia coli uracil DNA glycosylase, DNA Repair 3, 1273-1283.
-
(2004)
DNA Repair
, vol.3
, pp. 1273-1283
-
-
Shaw, R.W.1
Feller, J.A.2
Bloom, L.B.3
-
66
-
-
0034651873
-
DNA bending and a flip-out mechanism for base excision by the helix-hairpin-helix DNA glycosylase, Escherichia coli AlkA
-
Hollis, T., Ichikawa, Y., and Ellenberger, T. (2000) DNA bending and a flip-out mechanism for base excision by the helix-hairpin-helix DNA glycosylase, Escherichia coli AlkA, EMBO J. 19, 758-766.
-
(2000)
EMBO J.
, vol.19
, pp. 758-766
-
-
Hollis, T.1
Ichikawa, Y.2
Ellenberger, T.3
-
67
-
-
0034680316
-
Stressing-out DNA? The contribution of serine-phosphodiester interactions in catalysis by uracil DNA glycosylase
-
Werner, R. M., Jiang, Y. L., Gordley, R. G., Jagadeesh, G. J., Ladner, J. E., Xiao, G., Tordova, M., Gilliland, G. L., and Stivers, J. T. (2000) Stressing-out DNA? The contribution of serine-phosphodiester interactions in catalysis by uracil DNA glycosylase, Biochemistry 39, 12585-12594.
-
(2000)
Biochemistry
, vol.39
, pp. 12585-12594
-
-
Werner, R.M.1
Jiang, Y.L.2
Gordley, R.G.3
Jagadeesh, G.J.4
Ladner, J.E.5
Xiao, G.6
Tordova, M.7
Gilliland, G.L.8
Stivers, J.T.9
-
68
-
-
0037100702
-
Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: Evidence for the occurrence of long-range interactions between enzyme and substrate
-
Handa, P., Acharya, N., and Varshney, U. (2002) Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: evidence for the occurrence of long-range interactions between enzyme and substrate, Nucleic Acids Res. 30, 3086-3095.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3086-3095
-
-
Handa, P.1
Acharya, N.2
Varshney, U.3
-
69
-
-
0035907352
-
The role of leucine 191 of Escherichia coli uracil DNA glycosylase in the formation of a highly stable complex with the substrate mimic, ugi, and in uracil excision from the synthetic substrate
-
Handa, P., Roy, S., and Varshney, U. (2001) The role of leucine 191 of Escherichia coli uracil DNA glycosylase in the formation of a highly stable complex with the substrate mimic, ugi, and in uracil excision from the synthetic substrate, J. Biol. Chem. 276, 17324-17331.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 17324-17331
-
-
Handa, P.1
Roy, S.2
Varshney, U.3
-
70
-
-
0037084112
-
Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate
-
Zharkov, D. O., Golan, G., Gilboa, R., Fernandes, A. S., Gerchman, S. E., Kycia, J. H., Reiger, R. A., Grollman, A. P., and Shoham, G. (2002) Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate, EMBO J. 21, 789-800.
-
(2002)
EMBO J.
, vol.21
, pp. 789-800
-
-
Zharkov, D.O.1
Golan, G.2
Gilboa, R.3
Fernandes, A.S.4
Gerchman, S.E.5
Kycia, J.H.6
Reiger, R.A.7
Grollman, A.P.8
Shoham, G.9
-
71
-
-
15844379169
-
Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA
-
Banerjee, A., Yang, W., Karplus, M., and Verdine, G. L. (2005) Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA, Nature 434, 612-618.
-
(2005)
Nature
, vol.434
, pp. 612-618
-
-
Banerjee, A.1
Yang, W.2
Karplus, M.3
Verdine, G.L.4
-
72
-
-
0034708226
-
Structural basis for recognition and repair of the endogenous mutagen 8-oxo-guanine in DNA
-
Brimer, S. D., Norman, D. P. G., and Verdine, G. L. (2000) Structural basis for recognition and repair of the endogenous mutagen 8-oxo-guanine in DNA, Nature 403, 859-866.
-
(2000)
Nature
, vol.403
, pp. 859-866
-
-
Brimer, S.D.1
Norman, D.P.G.2
Verdine, G.L.3
-
73
-
-
6344223490
-
Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase
-
Coste, F., Ober, M., Carell, T., Boiteux, S., Zelwer, C., and Castaing, B. (2004) Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase, J. Biol. Chem. 279, 44074-44083.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 44074-44083
-
-
Coste, F.1
Ober, M.2
Carell, T.3
Boiteux, S.4
Zelwer, C.5
Castaing, B.6
-
74
-
-
4143149415
-
Site-specific DNA damage recognition by enzyme-induced base flipping
-
Stivers, J. T. (2004) Site-specific DNA damage recognition by enzyme-induced base flipping, Prog. Nucleic Acid Res. 77, 37-65.
-
(2004)
Prog. Nucleic Acid Res.
, vol.77
, pp. 37-65
-
-
Stivers, J.T.1
-
75
-
-
10644278833
-
Recognition of an unnatural difluorophenyl nucleotide by uracil DNA glycosylase
-
Jiang, Y. L., McDowell, L. M., Poliks, B., Studelska, D. R., Cao, C., Potter, G. S., Schaefer, J., Song, F., and Stivers, J. T. (2004) Recognition of an unnatural difluorophenyl nucleotide by uracil DNA glycosylase, Biochemistry 43, 15429-15438.
-
(2004)
Biochemistry
, vol.43
, pp. 15429-15438
-
-
Jiang, Y.L.1
McDowell, L.M.2
Poliks, B.3
Studelska, D.R.4
Cao, C.5
Potter, G.S.6
Schaefer, J.7
Song, F.8
Stivers, J.T.9
-
76
-
-
0034093291
-
Passing the baton in base excision repair
-
Wilson, S. H., and Kunkel, T. A. (2000) Passing the baton in base excision repair, Nat. Struct. Biol. 7, 176-178.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 176-178
-
-
Wilson, S.H.1
Kunkel, T.A.2
-
77
-
-
0037205477
-
Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA
-
Gilboa, R., Zharkov, D. O., Golan, G., Fernandes, A. S., Gerchman, S. E., Matz, E., Kycia, J. H., Grollman, A. P., and Shoham, G. (2002) Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA, J. Biol. Chem. 277, 19811-19816.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 19811-19816
-
-
Gilboa, R.1
Zharkov, D.O.2
Golan, G.3
Fernandes, A.S.4
Gerchman, S.E.5
Matz, E.6
Kycia, J.H.7
Grollman, A.P.8
Shoham, G.9
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