-
2
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
Adams, P.D., Pannu, N.S., Read, R.J., and Brünger, A.T. (1997). Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement. Proc. Natl. Acad. Sci. USA 94, 5018-5023.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brünger, A.T.4
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schläffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schläffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Bailey, S. (1994). The CCP4 suite: programs for protein crystallography. Acta Cryst. D50, 760-763.
-
(1994)
Acta Cryst.
, vol.D50
, pp. 760-763
-
-
Bailey, S.1
-
5
-
-
0027619372
-
DNA repair
-
Barnes, D.E., Lindahl, T., and Sedgwick, B. (1993). DNA repair. Curr. Opin. Cell Biol. 5, 424-433.
-
(1993)
Curr. Opin. Cell Biol.
, vol.5
, pp. 424-433
-
-
Barnes, D.E.1
Lindahl, T.2
Sedgwick, B.3
-
6
-
-
0032498302
-
Crystal structure of a G:T/U mismatch-specific DNA glycosylase: Mismatch recognition by complementary-strand interactions
-
Barrett, T.E., Savva, R., Panayotou, G., Barlow, T., Brown, T., Jiricny, J., and Pearl, L.H. (1998). Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions. Cell 92, 117-129.
-
(1998)
Cell
, vol.92
, pp. 117-129
-
-
Barrett, T.E.1
Savva, R.2
Panayotou, G.3
Barlow, T.4
Brown, T.5
Jiricny, J.6
Pearl, L.H.7
-
7
-
-
0027412196
-
ALSCRIPT: A tool to format multiple sequence alignments
-
Barton, G.J. (1993). ALSCRIPT: a tool to format multiple sequence alignments. Protein Eng. 6, 37-40.
-
(1993)
Protein Eng.
, vol.6
, pp. 37-40
-
-
Barton, G.J.1
-
8
-
-
0029079249
-
Processivity of Escherichia coli and rat liver mitochondrial uracil-DNA glycosylase is affected by NaCl concentration
-
Bennett, S.E., Sanderson, R.J., and Mosbaugh, D.W. (1995). Processivity of Escherichia coli and rat liver mitochondrial uracil-DNA glycosylase is affected by NaCl concentration. Biochemistry 34, 6109-6119.
-
(1995)
Biochemistry
, vol.34
, pp. 6109-6119
-
-
Bennett, S.E.1
Sanderson, R.J.2
Mosbaugh, D.W.3
-
9
-
-
0025604278
-
Cloning and expression in Escherichia coli of a gene for an alkylbase DNA glycosylase from Saccharomyces cerevisiae; a homologue to the bacterial alkA gene
-
Berdal, K.G., Bjørås, M., Bjelland,S.,and Seeberg, E. (1990). Cloning and expression in Escherichia coli of a gene for an alkylbase DNA glycosylase from Saccharomyces cerevisiae; a homologue to the bacterial alkA gene. EMBO J. 9, 4563-4568.
-
(1990)
EMBO J.
, vol.9
, pp. 4563-4568
-
-
Berdal, K.G.1
Bjørås, M.2
Seeberg, E.3
-
10
-
-
0032518911
-
Release of normal bases from intact DNA by a native DNA repair enzyme
-
Berdal, K.G., Johansen, R.F., and Seeberg, E. (1998). Release of normal bases from intact DNA by a native DNA repair enzyme. EMBO J. 15, 363-367.
-
(1998)
EMBO J.
, vol.15
, pp. 363-367
-
-
Berdal, K.G.1
Johansen, R.F.2
Seeberg, E.3
-
11
-
-
0030703177
-
Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7.8-dihydro-8-oxoguanine and abasic sites
-
Bjørås, M., Luna, L., Johnsen, B., Hoff, E., Haug, T., Rognes, T., and Seeberg, E. (1997). Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7.8-dihydro-8-oxoguanine and abasic sites. EMBO J. 16, 6314-6322.
-
(1997)
EMBO J.
, vol.16
, pp. 6314-6322
-
-
Bjørås, M.1
Luna, L.2
Johnsen, B.3
Hoff, E.4
Haug, T.5
Rognes, T.6
Seeberg, E.7
-
12
-
-
0026597444
-
Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger, A.T. (1992). Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature 355, 472-475.
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brünger, A.T.1
-
13
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
in press
-
Brünger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N.S., et al. (1998). Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Cryst., in press.
-
(1998)
Acta Cryst.
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
14
-
-
0025949662
-
Cloning and expression in Escherichia coli of a human cDNA encoding the DNA repair protein N-methylpurine-DNA glycosylase
-
Chakravarti, D., Ibeanu, G.C., Tano, K., and Mitra, S. (1991). Cloning and expression in Escherichia coli of a human cDNA encoding the DNA repair protein N-methylpurine-DNA glycosylase. J. Biol. Chem. 266, 15710-15715.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 15710-15715
-
-
Chakravarti, D.1
Ibeanu, G.C.2
Tano, K.3
Mitra, S.4
-
15
-
-
0025630512
-
Saccharomyces cerevisiae 3-methyladenine DNA glycosylase has homology to the AlkA glycosylase of E coli and is induced in response to DNA alkylation damage
-
Chen, J., Derfler, B., and Samson, L. (1990). Saccharomyces cerevisiae 3-methyladenine DNA glycosylase has homology to the AlkA glycosylase of E coli and is induced in response to DNA alkylation damage. EMBO J. 9, 4569-4575.
-
(1990)
EMBO J.
, vol.9
, pp. 4569-4575
-
-
Chen, J.1
Derfler, B.2
Samson, L.3
-
16
-
-
0021723791
-
Cloning of Escherichia coli genes encoding 3-methyladenine DNA glycosylases I and II
-
Clarke, N.D., Kvaal, M., and Seeberg, E. (1984). Cloning of Escherichia coli genes encoding 3-methyladenine DNA glycosylases I and II. Mol. Gen. Genet. 197, 368-372.
-
(1984)
Mol. Gen. Genet.
, vol.197
, pp. 368-372
-
-
Clarke, N.D.1
Kvaal, M.2
Seeberg, E.3
-
17
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole, S.T., Brosch, R., Parkhill, J., Gamier, T., Churcher, C., Harris, D., Gordon, S.V., Eiglmeirer, K., Gas, S., Barry III, C.E., et al. (1998). Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393, 537-544.
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
Gordon, S.V.7
Eiglmeirer, K.8
Gas, S.9
Barry C.E. III10
-
18
-
-
0030979263
-
DNA glycosylases
-
Cunningham, R.P. (1997). DNA glycosylases. Mutat. Res. 383, 189-196.
-
(1997)
Mutat. Res.
, vol.383
, pp. 189-196
-
-
Cunningham, R.P.1
-
19
-
-
0001473891
-
Chemistry of glycosylases and endonucleases involved in base-excision repair
-
David, S.S., and Williams, S.D. (1998). Chemistry of glycosylases and endonucleases involved in base-excision repair. Chem. Rev. 98, 1221-1261.
-
(1998)
Chem. Rev.
, vol.98
, pp. 1221-1261
-
-
David, S.S.1
Williams, S.D.2
-
20
-
-
0031058188
-
Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
-
de La Fortelle, E., and Bricogne, G. (1997). Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol. 276, 472-494.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 472-494
-
-
De La Fortelle, E.1
Bricogne, G.2
-
21
-
-
0029929070
-
The helixhairpin-helix DNA-binding motif: A structural basis for nonsequencespecific recognition of DNA
-
Doherty, A.J., Serpell, L.C., and Ponting, C.P. (1996). The helixhairpin-helix DNA-binding motif: a structural basis for nonsequencespecific recognition of DNA. Nucleic Acids Res. 24, 2488-2497.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2488-2497
-
-
Doherty, A.J.1
Serpell, L.C.2
Ponting, C.P.3
-
22
-
-
0028174274
-
6-ethenoadenine is preferred over 3-methyladenine as substrate by a cloned human N-methylpurine-DNA glycosylase (3-methyladenine-DNA glycosylase)
-
6-ethenoadenine is preferred over 3-methyladenine as substrate by a cloned human N-methylpurine-DNA glycosylase (3-methyladenine-DNA glycosylase). Biochemistry 33, 1624-1628.
-
(1994)
Biochemistry
, vol.33
, pp. 1624-1628
-
-
Dosanjh, M.K.1
Roy, R.2
Mitra, S.3
Singer, B.4
-
23
-
-
0028087282
-
All four known cyclic adducts formed in DNA by the vinyl chloride metabolite chloroacetaldehyde are released by a human DNA glycosylase
-
Dosanjh, M.K., Chenna, A., Kim, E., Fraenkel-Conrat, H., Samson, L., and Singer, B. (1994). All four known cyclic adducts formed in DNA by the vinyl chloride metabolite chloroacetaldehyde are released by a human DNA glycosylase. Proc. Natl. Acad. Sci. USA 91, 1024-1028.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1024-1028
-
-
Dosanjh, M.K.1
Chenna, A.2
Kim, E.3
Fraenkel-Conrat, H.4
Samson, L.5
Singer, B.6
-
24
-
-
0031045585
-
Preparation of selenomethionyl proteins for phase determination
-
Doublié, S. (1997). Preparation of selenomethionyl proteins for phase determination. Methods Enzymol. 276, 523-530.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 523-530
-
-
Doublié, S.1
-
25
-
-
12644251998
-
Base excision repair deficient mice lacking the Aag alkyladenine DNA glycosylase
-
Engelward, B.P., Weeda, G., Wyatt, M.D., Broekhof, J.L., de Wit, J., Donker, I., Allan, J.M., Gold, B., Hoeijmakers, J.H., and Samson, L.D. (1997). Base excision repair deficient mice lacking the Aag alkyladenine DNA glycosylase. Proc. Natl. Acad. Sci. USA 94, 13087-13092.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13087-13092
-
-
Engelward, B.P.1
Weeda, G.2
Wyatt, M.D.3
Broekhof, J.L.4
De Wit, J.5
Donker, I.6
Allan, J.M.7
Gold, B.8
Hoeijmakers, J.H.9
Samson, L.D.10
-
26
-
-
0027609916
-
SETOR: Hardware lighted three-dimensional solid model representations of macromolecules
-
Evans, S.V. (1993). SETOR: Hardware lighted three-dimensional solid model representations of macromolecules. J. Mol. Graph. 11, 134-138.
-
(1993)
J. Mol. Graph.
, vol.11
, pp. 134-138
-
-
Evans, S.V.1
-
27
-
-
0028675029
-
The effect of N7-methylguanine on duplex DNA structure
-
Ezaz-Nikpay, K., and Verdine, G.L. (1994). The effect of N7-methylguanine on duplex DNA structure. Chem. Biol. 1, 235-240.
-
(1994)
Chem. Biol.
, vol.1
, pp. 235-240
-
-
Ezaz-Nikpay, K.1
Verdine, G.L.2
-
28
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
-
Fraser, C.M., Casjens, S., Huang, W.M., Sutton, G.G., Clayton, R., Lathigra, R., White, O., Ketchum, K.A., Dodson, R., Hickey, E.K., et al. (1997). Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature 390, 580-586.
-
(1997)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.M.1
Casjens, S.2
Huang, W.M.3
Sutton, G.G.4
Clayton, R.5
Lathigra, R.6
White, O.7
Ketchum, K.A.8
Dodson, R.9
Hickey, E.K.10
-
29
-
-
0004228157
-
-
Washington, D.C.: ASM Press
-
Friedberg, E.G., Walker, G.G., and Siede, W. (1995). DNA Repair and Mutagenesis (Washington, D.C.: ASM Press).
-
(1995)
DNA Repair and Mutagenesis
-
-
Friedberg, E.G.1
Walker, G.C.2
Siede, W.3
-
30
-
-
0030750215
-
The Ogg1 protein of Saccharomyces cerevisiae: A 7,8-dihydro-8-oxoguanine DNA glycosylase/AP lyase whose lysine 241 is a critical residue for catalytic activity
-
Girard, P-M., Guibourt, N., and Boiteux, S. (1997). The Ogg1 protein of Saccharomyces cerevisiae: a 7,8-dihydro-8-oxoguanine DNA glycosylase/AP lyase whose lysine 241 is a critical residue for catalytic activity. Nuc. Acids Res. 25, 3204-3211.
-
(1997)
Nuc. Acids Res.
, vol.25
, pp. 3204-3211
-
-
Girard, P.-M.1
Guibourt, N.2
Boiteux, S.3
-
31
-
-
0032544037
-
Generation of a strong mutator phenotype by inappropriate DNA glycosylase expression
-
Glassner, B.J., Rasmussen, L.J., Najarian, M.T., Posnick, L.M., and Samson, L.D. (1998). Generation of a strong mutator phenotype by inappropriate DNA glycosylase expression. Proc. Natl. Acad. Sci. USA. 95, 9997-1002.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9997-11002
-
-
Glassner, B.J.1
Rasmussen, L.J.2
Najarian, M.T.3
Posnick, L.M.4
Samson, L.D.5
-
34
-
-
0029665054
-
The 1.85 Å structure of vaccinia protein VP39: A bifunctional enzyme that participates in the modification of both mRNA ends
-
Hodel, A.E., Gershon, P.D., Shi, X., and Quiocho, F.A. (1996). The 1.85 Å structure of vaccinia protein VP39: a bifunctional enzyme that participates in the modification of both mRNA ends. Cell 85, 247-256.
-
(1996)
Cell
, vol.85
, pp. 247-256
-
-
Hodel, A.E.1
Gershon, P.D.2
Shi, X.3
Quiocho, F.A.4
-
35
-
-
0027440362
-
Protein structure comparison by alignment of distance matricies
-
Holm, L., and Sander, C. (1993). Protein structure comparison by alignment of distance matricies. J. Mol. Biol. 233, 123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
36
-
-
0023929705
-
Specific ring stacking interaction on the tryptophan-7-methylguanine system: Comparative crystallographic studies of indole derivatives-7-methylguanine base, nucleoside, and nucleotide complexes
-
Ishida, T., Doi, M., Ueda, H., Inoue, M., and Scheldrick, G.M. (1988). Specific ring stacking interaction on the tryptophan-7-methylguanine system: comparative crystallographic studies of indole derivatives-7-methylguanine base, nucleoside, and nucleotide complexes. J. Am. Chem. Soc. 110, 2286-2294.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 2286-2294
-
-
Ishida, T.1
Doi, M.2
Ueda, H.3
Inoue, M.4
Scheldrick, G.M.5
-
38
-
-
0028010888
-
Hhal methyltransferase flips its target base out of the DNA helix
-
Klimasauskas, S., Kumar, S., Roberts, R.J., and Cheng, X. (1994). Hhal methyltransferase flips its target base out of the DNA helix. Cell 76, 357-369.
-
(1994)
Cell
, vol.76
, pp. 357-369
-
-
Klimasauskas, S.1
Kumar, S.2
Roberts, R.J.3
Cheng, X.4
-
39
-
-
0030861915
-
DNA glycosylases in the base excision repair of DNA
-
Krokan, H.E., Standal, R., and Slupphaug, G. (1997). DNA glycosylases in the base excision repair of DNA. Biochem. J. 325, 1-16.
-
(1997)
Biochem. J.
, vol.325
, pp. 1-16
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
40
-
-
0026499118
-
Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III
-
Kuo, C-F., McRee, D.E., Fisher, C.L., O'Handley, S.F., Cunningham, R.P., and Tainer, J.A. (1992). Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III. Science 258, 434-440.
-
(1992)
Science
, vol.258
, pp. 434-440
-
-
Kuo, C.-F.1
McRee, D.E.2
Fisher, C.L.3
O'Handley, S.F.4
Cunningham, R.P.5
Tainer, J.A.6
-
41
-
-
0030602838
-
Structural basis for the excision repair of alkylation-damaged DNA
-
Labahn, J., Schärer, O.D., Long, A., Ezaz-Nikpay, K., Verdine, G.L., and Ellenberger, T.E. (1996). Structural basis for the excision repair of alkylation-damaged DNA. Cell 86, 321-329.
-
(1996)
Cell
, vol.86
, pp. 321-329
-
-
Labahn, J.1
Schärer, O.D.2
Long, A.3
Ezaz-Nikpay, K.4
Verdine, G.L.5
Ellenberger, T.E.6
-
42
-
-
0022363977
-
Met-hylation-induced blocks to in vitro DNA replication
-
Larson, K., Sahm, J., Shenkar, R., and Strauss, B. (1985). Met-hylation-induced blocks to in vitro DNA replication. Mutat. Res. 150, 77-84.
-
(1985)
Mutat. Res.
, vol.150
, pp. 77-84
-
-
Larson, K.1
Sahm, J.2
Shenkar, R.3
Strauss, B.4
-
43
-
-
0000243829
-
PROCHECK-a program to check the stereochemical quality of protein structures
-
Laskowski, R.A., McArthur, M.W., Moss, D.S., and Thornton, J.M. (1993). PROCHECK-a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
McArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
44
-
-
0024539180
-
Defining the structure of irregular nucleic acids: Conventions and principles
-
Lavery, R., and Sklenar, H. (1989). Defining the structure of irregular nucleic acids: Conventions and Principles. J. Biomol. Struct. Dyn. 6, 655-667.
-
(1989)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 655-667
-
-
Lavery, R.1
Sklenar, H.2
-
46
-
-
0020016636
-
DNA repair enzymes
-
Lindahl, T. (1982). DNA repair enzymes. Annu. Rev. Biochem. 51, 61-87.
-
(1982)
Annu. Rev. Biochem.
, vol.51
, pp. 61-87
-
-
Lindahl, T.1
-
47
-
-
4243468938
-
The cation-π interaction
-
Ma, J.C., and Dougherty, D.A. (1997). The cation-π interaction. Chem. Rev. 97, 1303-1324.
-
(1997)
Chem. Rev.
, vol.97
, pp. 1303-1324
-
-
Ma, J.C.1
Dougherty, D.A.2
-
48
-
-
0028241445
-
DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli
-
Mackay, W.J., Han, S., and Samson, L.D. (1994). DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli. J. Bacteriol. 176, 3224-3230.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 3224-3230
-
-
Mackay, W.J.1
Han, S.2
Samson, L.D.3
-
49
-
-
0030728936
-
Cocrystal structure of the messenger RNA 5′ cap-binding protein (elF4E) bound to 7-methyl-GDP
-
Marcotrigiano, J., Gingras, A.C., Sonenberg, N., and Burley, S.K. (1997). Cocrystal structure of the messenger RNA 5′ cap-binding protein (elF4E) bound to 7-methyl-GDP. Cell 89, 951-961.
-
(1997)
Cell
, vol.89
, pp. 951-961
-
-
Marcotrigiano, J.1
Gingras, A.C.2
Sonenberg, N.3
Burley, S.K.4
-
50
-
-
0030826444
-
Structure of translation factor elF4E bound to m7GDP and interaction with 4E-binding protein
-
Matsuo, H., Li, H., McGuire, A.M., Fletcher, C.M., Gingras, A.C., Sonenberg, N., Wagner, G. (1997). Structure of translation factor elF4E bound to m7GDP and interaction with 4E-binding protein. Nat. Struct. Biol. 4, 717-724.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 717-724
-
-
Matsuo, H.1
Li, H.2
McGuire, A.M.3
Fletcher, C.M.4
Gingras, A.C.5
Sonenberg, N.6
Wagner, G.7
-
51
-
-
0029936462
-
Excision of DNA adducts of nitrogen mustards by bacterial and mammalian 3-methyladenine-DNA glycosylases
-
Mattes, W.B., Lee, C.-S., Laval, J., and O'Connor, T.R. (1996). Excision of DNA adducts of nitrogen mustards by bacterial and mammalian 3-methyladenine-DNA glycosylases. Carcinogenesis 17, 643-648.
-
(1996)
Carcinogenesis
, vol.17
, pp. 643-648
-
-
Mattes, W.B.1
Lee, C.-S.2
Laval, J.3
O'Connor, T.R.4
-
53
-
-
0030600463
-
Cloning and characterization of a cDNA encoding a 3-methyladenine DNA glycosylase from the fission yeast Schizzosaccharomyces pombe
-
Memisoglu, A., and Samson, L. (1996). Cloning and characterization of a cDNA encoding a 3-methyladenine DNA glycosylase from the fission yeast Schizzosaccharomyces pombe. Gene 177, 229-235.
-
(1996)
Gene
, vol.177
, pp. 229-235
-
-
Memisoglu, A.1
Samson, L.2
-
54
-
-
0026447255
-
A repair system for 8-oxo-7,8-dihydroguanine
-
Michaels, M.L., Tchou, J., Grollman, A.P., and Miller, J.H. (1992). A repair system for 8-oxo-7,8-dihydroguanine. Biochemistry 31, 10964-10968.
-
(1992)
Biochemistry
, vol.31
, pp. 10964-10968
-
-
Michaels, M.L.1
Tchou, J.2
Grollman, A.P.3
Miller, J.H.4
-
55
-
-
0027182151
-
Bacillus subtilis alkA gene encoding inducible 3-methyladenine DNA glycosylase is adjacent to the ada operon
-
Morohoshi, F., Hayashi, K., and Munkata, N. (1993). Bacillus subtilis alkA gene encoding inducible 3-methyladenine DNA glycosylase is adjacent to the ada operon. J. Bacteriol. 175, 6010-6017.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 6010-6017
-
-
Morohoshi, F.1
Hayashi, K.2
Munkata, N.3
-
56
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
Nash, H.M., Bruner, S.D., Schärer, O.D., Kawate, T., Addona, T.A., Spooner, E., Lane, W.S., and Verdine, G.L. (1996). Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr. Biol. 6, 968-980.
-
(1996)
Curr. Biol.
, vol.6
, pp. 968-980
-
-
Nash, H.M.1
Bruner, S.D.2
Schärer, O.D.3
Kawate, T.4
Addona, T.A.5
Spooner, E.6
Lane, W.S.7
Verdine, G.L.8
-
57
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properities of hydrocarbons
-
Nicholls, A., Sharp, K.A., and Honig, B. (1991). Protein folding and association: insights from the interfacial and thermodynamic properities of hydrocarbons. Proteins 11, 281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
58
-
-
0027759522
-
Purification and characterization of human 3-methyladenine-DNA glycosylase
-
O'Connor, T.R. (1993). Purification and characterization of human 3-methyladenine-DNA glycosylase. Nucleic Acids Res. 21, 5561-5569.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5561-5569
-
-
O'Connor, T.R.1
-
59
-
-
0025784273
-
Human cDNA expressing a functional DNA glycosylase excising 3-methyladenine and 7-methylguanine
-
O'Connor, T.R., and Laval, J. (1991). Human cDNA expressing a functional DNA glycosylase excising 3-methyladenine and 7-methylguanine. Biochem. Biophys. Res. Com. 176, 1170-1177.
-
(1991)
Biochem. Biophys. Res. Com.
, vol.176
, pp. 1170-1177
-
-
O'Connor, T.R.1
Laval, J.2
-
60
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997). Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
61
-
-
0028794564
-
Structure, function, and inhibition of O6-alkylguanine-DNA alkyltransferase
-
Pegg, A.E., Dolan, M.E., and Moschel, R.C. (1995). Structure, function, and inhibition of O6-alkylguanine-DNA alkyltransferase. Prog. Nucleic Acid Res. Mol. Biol. 51, 167-223.
-
(1995)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.51
, pp. 167-223
-
-
Pegg, A.E.1
Dolan, M.E.2
Moschel, R.C.3
-
62
-
-
0030816108
-
Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae
-
Radicella, J.P., Dherin, C., Desmaze, C., Fox, M.S., and Boiteux, S. (1997). Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 94, 8010-8015.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 8010-8015
-
-
Radicella, J.P.1
Dherin, C.2
Desmaze, C.3
Fox, M.S.4
Boiteux, S.5
-
63
-
-
0027402969
-
Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
-
Ramakrishnan, V., Finch, J.T., Graziano, V., Lee, P.L., and Sweet, R.M. (1993). Crystal structure of globular domain of histone H5 and its implications for nucleosome binding. Nature 362, 219-223.
-
(1993)
Nature
, vol.362
, pp. 219-223
-
-
Ramakrishnan, V.1
Finch, J.T.2
Graziano, V.3
Lee, P.L.4
Sweet, R.M.5
-
64
-
-
0029068629
-
The crystal structure of Haelll methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing
-
Reinisch, K.M., Chen, L., Verdine, G.L., and Lipscomb, W.N. (1995). The crystal structure of Haelll methyltransferase covalently complexed to DNA: an extrahelical cytosine and rearranged base pairing. Cell 82, 143-153.
-
(1995)
Cell
, vol.82
, pp. 143-153
-
-
Reinisch, K.M.1
Chen, L.2
Verdine, G.L.3
Lipscomb, W.N.4
-
65
-
-
84944812409
-
Improved Fourier coefficients for maps using phases from partial structures with errors
-
Read, R.J. (1986). Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Cryst. A42, 140-149.
-
(1986)
Acta Cryst.
, vol.A42
, pp. 140-149
-
-
Read, R.J.1
-
66
-
-
0032512439
-
Specific interaction of wild-type and truncated mouse N-methylpurine-DNA glycosylase with ethenoadenine-containing DNA
-
Roy, R., Biswas, T., Hazra, T.K., Roy, G., Grabowski, D.T., Izumi, T., Srinivasan, G., and Mitra, S. (1998). Specific interaction of wild-type and truncated mouse N-methylpurine-DNA glycosylase with ethenoadenine-containing DNA. Biochemistry 37, 580-589.
-
(1998)
Biochemistry
, vol.37
, pp. 580-589
-
-
Roy, R.1
Biswas, T.2
Hazra, T.K.3
Roy, G.4
Grabowski, D.T.5
Izumi, T.6
Srinivasan, G.7
Mitra, S.8
-
67
-
-
0020341190
-
Nonenzymatic methylation of DNA by the intracellular methyl group donor S-adenosyl-L-methionine is a potentially mutagenic reaction
-
Rydberg, B., and Lindahl, T. (1982). Nonenzymatic methylation of DNA by the intracellular methyl group donor S-adenosyl-L-methionine is a potentially mutagenic reaction. EMBO J. 1, 211-216.
-
(1982)
EMBO J.
, vol.1
, pp. 211-216
-
-
Rydberg, B.1
Lindahl, T.2
-
68
-
-
0025990209
-
Cloning and characterization of a 3-methyladenine DNA glycosylase cDNA from human cells whose gene maps to chromosome 16
-
Samson L., Derfler, B., Boosalis, M., and Call, K. (1991). Cloning and characterization of a 3-methyladenine DNA glycosylase cDNA from human cells whose gene maps to chromosome 16. Proc. Natl. Acad. Sci. USA 88, 9127-9131.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 9127-9131
-
-
Samson, L.1
Derfler, B.2
Boosalis, M.3
Call, K.4
-
69
-
-
0028265211
-
Cloning of a 3-methyladenine-DNA glycosylase from Arabidopsis thaliana
-
Santerre, A., and Britt, A.B. (1994). Cloning of a 3-methyladenine-DNA glycosylase from Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 91, 2240-2244.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 2240-2244
-
-
Santerre, A.1
Britt, A.B.2
-
70
-
-
0028239225
-
Excision of hypoxanthine from DNA containing dIMP residues by the escherichia coli, yeast, rat, and human alkylpurine DNA glycosylases
-
Saparbaev, M., and Laval, J. (1994). Excision of hypoxanthine from DNA containing dIMP residues by the Escherichia coli, yeast, rat, and human alkylpurine DNA glycosylases. Proc. Natl. Acad. Sci. USA 91, 5873-5877.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 5873-5877
-
-
Saparbaev, M.1
Laval, J.2
-
72
-
-
0028868463
-
Specific binding of the DNA repair enzyme AlkA to a pyrrolidine-based inhibitor
-
Schärer, O.D., Ortholand, J.-Y., Ganesan, A., Ezaz-Nikpay, K., and Verdine, G.L. (1995). Specific binding of the DNA repair enzyme AlkA to a pyrrolidine-based inhibitor. J. Am. Chem. Soc. 117, 6623-6624.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 6623-6624
-
-
Schärer, O.D.1
Ortholand, J.-Y.2
Ganesan, A.3
Ezaz-Nikpay, K.4
Verdine, G.L.5
-
73
-
-
0038342180
-
Specific binding of a designed pyrrolidine abasic site analog to multiple DNA glycosylases
-
Schärer, O.D., Nash, H.M., Jiricny, J., Laval, J., and Verdine, G.L. (1998). Specific binding of a designed pyrrolidine abasic site analog to multiple DNA glycosylases. J. Biol. Chem. 273, 8592-8597.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 8592-8597
-
-
Schärer, O.D.1
Nash, H.M.2
Jiricny, J.3
Laval, J.4
Verdine, G.L.5
-
74
-
-
0028287938
-
Transition state analysis and inhibitor design for enzymatic reactions
-
Schramm, V.L., Horenstein, B.A., and Kline, P.C. (1994). Transition state analysis and inhibitor design for enzymatic reactions. J. Biol. Chem. 269, 18259-18262.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18259-18262
-
-
Schramm, V.L.1
Horenstein, B.A.2
Kline, P.C.3
-
76
-
-
0029904839
-
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
Slupphaug, G., Mol, C.D., Kavli, B., Arvai, A.S., Krokan, H.E., and Tainer, J.A. (1996). A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature 384, 87-92.
-
(1996)
Nature
, vol.384
, pp. 87-92
-
-
Slupphaug, G.1
Mol, C.D.2
Kavli, B.3
Arvai, A.S.4
Krokan, H.E.5
Tainer, J.A.6
-
77
-
-
0029810398
-
Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli
-
Taverna, P., and Sedgwick, B. (1996). Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli. J. Bacteriol. 178, 5105-5111.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5105-5111
-
-
Taverna, P.1
Sedgwick, B.2
-
78
-
-
85030348105
-
-
Los Alamos National Laboratory
-
Terwilliger, T.C. (1997). SOLVE (Los Alamos National Laboratory: http://www.solve.lanl.gov).
-
(1997)
SOLVE
-
-
Terwilliger, T.C.1
-
79
-
-
0029119097
-
Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure
-
Thayer, M.M., Ahern, H., Xing, D., Cunningham, R.P., and Tainer, J.A. (1995). Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure. EMBO J. 14, 4108-4120.
-
(1995)
EMBO J.
, vol.14
, pp. 4108-4120
-
-
Thayer, M.M.1
Ahern, H.2
Xing, D.3
Cunningham, R.P.4
Tainer, J.A.5
-
80
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
81
-
-
0029896229
-
Cloning and expression in Escherichia coli of the OGG1 gene of saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine
-
van der Kemp, P.A., Thomas, D., Barbey, R., de Oliveira, R., and Boiteux, S. (1996). Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine. Proc. Natl. Acad. Sci. USA 93, 5197-5202.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5197-5202
-
-
Van Der Kemp, P.A.1
Thomas, D.2
Barbey, R.3
De Oliveira, R.4
Boiteux, S.5
-
82
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
Van Duyne, G.D., Standaert, R.F., Karplus, P.A., Schreiber, S.L., Clardy, J. (1993). Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J. Mol. Biol. 229, 105-124.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
83
-
-
0031149139
-
How do DNA repair proteins locate damaged bases in the genome?
-
Verdine, G.L., and Bruner, S.D. (1997). How do DNA repair proteins locate damaged bases in the genome? Chem. Biol. 4, 329-334.
-
(1997)
Chem. Biol.
, vol.4
, pp. 329-334
-
-
Verdine, G.L.1
Bruner, S.D.2
-
84
-
-
0025314841
-
Mismatch-specific thymine DNA glycosylase and DNA polymerase beta mediate the correction of G.T mispairs in nuclear extracts from human cells
-
Weibauer, K., and Jiricny, J. (1990). Mismatch-specific thymine DNA glycosylase and DNA polymerase beta mediate the correction of G.T mispairs in nuclear extracts from human cells. Proc. Natl. Acad. Sci. USA 87, 5842-5845.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 5842-5845
-
-
Weibauer, K.1
Jiricny, J.2
-
85
-
-
0026658707
-
Crystal structure of a B-DNA dodecamer containing inosine, d(CGCIAATTCGCG), at 2.4 Å resolution and its comparison with other B-DNA dodecamers
-
Xuan, J-C., Weber, I.T. (1992). Crystal structure of a B-DNA dodecamer containing inosine, d(CGCIAATTCGCG), at 2.4 Å resolution and its comparison with other B-DNA dodecamers. Nucleic Acids Res. 20, 5457-5464.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5457-5464
-
-
Xuan, J.-C.1
Weber, I.T.2
-
86
-
-
16044372779
-
Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli
-
Yamagata, Y., Kato, M., Odawara, K., Tokuno, Y., Nakashima, Y., Matsushima, N., Yasumura, K., Tomita, K., Ihara, K., Fujii, Y., et al. (1996). Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli. Cell 86, 311-319.
-
(1996)
Cell
, vol.86
, pp. 311-319
-
-
Yamagata, Y.1
Kato, M.2
Odawara, K.3
Tokuno, Y.4
Nakashima, Y.5
Matsushima, N.6
Yasumura, K.7
Tomita, K.8
Ihara, K.9
Fujii, Y.10
|