-
1
-
-
0032498302
-
Crystal structure of a G:T/U mismatch-specific DNA glycosylase: Mismatch recognition by complementary-strand interactions
-
Barrett, T.E., Savva, R., Panayotou, G., Barlow, T., Brown, T. Jiricny, J. and Pearl, L.H. (1998) Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions. Cell, 92, 117-129.
-
(1998)
Cell
, vol.92
, pp. 117-129
-
-
Barrett, T.E.1
Savva, R.2
Panayotou, G.3
Barlow, T.4
Brown, T.5
Jiricny, J.6
Pearl, L.H.7
-
2
-
-
0032518911
-
Release of normal bases from intact DNA by a native DNA repair enzyme
-
Berdal, K.G., Johansen, R.F. and Seeberg, E. (1998) Release of normal bases from intact DNA by a native DNA repair enzyme. EMBO J., 17, 363-367.
-
(1998)
EMBO J.
, vol.17
, pp. 363-367
-
-
Berdal, K.G.1
Johansen, R.F.2
Seeberg, E.3
-
3
-
-
0026597444
-
Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger, A.T. (1992) Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature, 355, 472-475.
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brünger, A.T.1
-
4
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger, A.T. et al. (1998) Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D, 54, 905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
-
5
-
-
0030986454
-
Unusually strong binding of a designed transition-state analog to a base-excision DNA repair protein
-
Deng, L., Scharer, O.D. and Verdine, G.L. (1997) Unusually strong binding of a designed transition-state analog to a base-excision DNA repair protein. J. Am. Chem. Soc., 119, 7865-7866.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 7865-7866
-
-
Deng, L.1
Scharer, O.D.2
Verdine, G.L.3
-
6
-
-
0029929070
-
The helix-hairpin-helix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA
-
Doherty, A.J., Serpell, L.C. and Ponting, C.P. (1996) The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA. Nucleic Acids Res., 24, 2488-2497.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2488-2497
-
-
Doherty, A.J.1
Serpell, L.C.2
Ponting, C.P.3
-
7
-
-
0032570769
-
A chemical and genetic approach together define the biological consequences of 3-methyladenine lesions in the mammalian genome
-
Engelward, B.P., Allan, J.M., Dreslin, A.J., Kelly, J.D., Wu, M.M., Gold, B. and Samson, L.D. (1998) A chemical and genetic approach together define the biological consequences of 3-methyladenine lesions in the mammalian genome. J. Biol. Chem., 273, 5412-5418.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 5412-5418
-
-
Engelward, B.P.1
Allan, J.M.2
Dreslin, A.J.3
Kelly, J.D.4
Wu, M.M.5
Gold, B.6
Samson, L.D.7
-
8
-
-
0027609916
-
SETOR: Hardware lighted three-dimensional solid model representations of macromolecules
-
Evans, S.V. (1990) SETOR: hardware lighted three-dimensional solid model representations of macromolecules. J. Mol. Graph., 11, 134-138.
-
(1990)
J. Mol. Graph.
, vol.11
, pp. 134-138
-
-
Evans, S.V.1
-
10
-
-
0016304955
-
Crystal structure of a lysozyme-tetrasaccharide lactone complex
-
Ford, L.O., Johnson, L.N., Machin, P.A., Phillips, D.C. and Tijan, R. (1974) Crystal structure of a lysozyme-tetrasaccharide lactone complex. J. Mol. Biol., 88, 349-371.
-
(1974)
J. Mol. Biol.
, vol.88
, pp. 349-371
-
-
Ford, L.O.1
Johnson, L.N.2
Machin, P.A.3
Phillips, D.C.4
Tijan, R.5
-
11
-
-
0004228157
-
-
ASM Press, Washington, DC
-
Friedberg, E.C., Walker, G.C. and Siede, W. (1995) DNA Repair and Mutagenesis. ASM Press, Washington, DC.
-
(1995)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
-
13
-
-
0031763884
-
MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily
-
Guan, Y., Manuel, R.C. Arvai, A.S., Parikh, S.S., Mol, C.D., Miller, J.H., Lloyd, S. and Tainer, J.A. (1998) MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily. Nature Struct. Biol., 5, 1058-1064.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 1058-1064
-
-
Guan, Y.1
Manuel, R.C.2
Arvai, A.S.3
Parikh, S.S.4
Mol, C.D.5
Miller, J.H.6
Lloyd, S.7
Tainer, J.A.8
-
15
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
16
-
-
0033573938
-
Global response of Saccharomyces cerevisiae to an alkylating agent
-
Jelinsky, S.A. and Samson, L.D. (1999) Global response of Saccharomyces cerevisiae to an alkylating agent. Proc. Natl Acad. Sci. USA, 96, 1486-1491.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 1486-1491
-
-
Jelinsky, S.A.1
Samson, L.D.2
-
18
-
-
0026499118
-
Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III
-
Kuo, C.F., McRee, D.E., Fisher, C.L., O'Handley, S.F., Cunningham, R.P. and Tainer, J.A. (1994) Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III. Science, 258, 434-440.
-
(1994)
Science
, vol.258
, pp. 434-440
-
-
Kuo, C.F.1
McRee, D.E.2
Fisher, C.L.3
O'Handley, S.F.4
Cunningham, R.P.5
Tainer, J.A.6
-
19
-
-
0030602838
-
Structural basis for the excision repair of alkylation-damaged DNA
-
Labahn, J., Scharer, O.D., Long, A., Ezaz-Nikpay, K., Verdine, G.L. and Ellenberger, T.E. (1996) Structural basis for the excision repair of alkylation-damaged DNA. Cell, 86, 321-329.
-
(1996)
Cell
, vol.86
, pp. 321-329
-
-
Labahn, J.1
Scharer, O.D.2
Long, A.3
Ezaz-Nikpay, K.4
Verdine, G.L.5
Ellenberger, T.E.6
-
20
-
-
0032538337
-
Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: Mechanisms for nucleotide flipping and base excision
-
Lau, A.Y., Scharer, O.D., Samson, L., Verdine, G.L. and Ellenberger, T. (1998) Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision. Cell, 95, 249-258.
-
(1998)
Cell
, vol.95
, pp. 249-258
-
-
Lau, A.Y.1
Scharer, O.D.2
Samson, L.3
Verdine, G.L.4
Ellenberger, T.5
-
21
-
-
0024539180
-
Defining the structure of irregular nucleic acids: Conventions and principles
-
Lavery, R. and Sklenar, H. (1989) Defining the structure of irregular nucleic acids: conventions and principles. J. Biomol. Struct. Dyn., 6, 655-667.
-
(1989)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 655-667
-
-
Lavery, R.1
Sklenar, H.2
-
22
-
-
78651135051
-
Further studies on the alkylation of nucleic acids and their constituent nucleotides
-
Lawley, P.D. and Brookes, P. (1963) Further studies on the alkylation of nucleic acids and their constituent nucleotides. Biochem. J., 89, 127-138.
-
(1963)
Biochem. J.
, vol.89
, pp. 127-138
-
-
Lawley, P.D.1
Brookes, P.2
-
23
-
-
0020016636
-
DNA repair enzymes
-
Lindahl, T. (1982) DNA repair enzymes. Annu. Rev. Biochem., 51, 61-87.
-
(1982)
Annu. Rev. Biochem.
, vol.51
, pp. 61-87
-
-
Lindahl, T.1
-
24
-
-
0023919219
-
Regulation and expression of the adaptive response to alkylating agents
-
Lindahl, T., Sedgwick, B., Sekiguchi, M. and Nakabeppu, Y. (1988) Regulation and expression of the adaptive response to alkylating agents. Annu. Rev. Biochem., 57, 133-157.
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 133-157
-
-
Lindahl, T.1
Sedgwick, B.2
Sekiguchi, M.3
Nakabeppu, Y.4
-
25
-
-
0029131298
-
Structural basis for DNA bending by the architectural transcription factor LEF-1
-
Love, J.J., Li, X., Case, D.A., Giese, K., Grosschedl, R. and Wright, P.E. (1995) Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature, 376, 791-795.
-
(1995)
Nature
, vol.376
, pp. 791-795
-
-
Love, J.J.1
Li, X.2
Case, D.A.3
Giese, K.4
Grosschedl, R.5
Wright, P.E.6
-
26
-
-
0032487974
-
Synthesis of a 2-deoxy-ribose type 1-N-iminosugar
-
Makino, K. and Ichikawa, Y. (1998) Synthesis of a 2-deoxy-ribose type 1-N-iminosugar. Tetrahedron Lett., 39, 8245-8248.
-
(1998)
Tetrahedron Lett.
, vol.39
, pp. 8245-8248
-
-
Makino, K.1
Ichikawa, Y.2
-
27
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
Nash, H.M., Bruner, S.D., Scharer, O.D., Kawate, T., Addona, T.A., Spooner, E., Lane, W.S. and Verdine, G.L. (1996) Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr. Biol., 6, 968-980.
-
(1996)
Curr. Biol.
, vol.6
, pp. 968-980
-
-
Nash, H.M.1
Bruner, S.D.2
Scharer, O.D.3
Kawate, T.4
Addona, T.A.5
Spooner, E.6
Lane, W.S.7
Verdine, G.L.8
-
28
-
-
0000732609
-
GRASP - Graphical representation and analysis of surface properties
-
Nicholls, A., Bharadwaj, R. and Honig, B. (1993) GRASP - graphical representation and analysis of surface properties. Biophys. J., 64, A116.
-
(1993)
Biophys. J.
, vol.64
-
-
Nicholls, A.1
Bharadwaj, R.2
Honig, B.3
-
29
-
-
0033578010
-
Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins
-
Ohndorf, U.M., Rould, M.A., He, Q., Pabo, C.O. and Lippard, S.J. (1999) Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins. Nature, 399, 708-712.
-
(1999)
Nature
, vol.399
, pp. 708-712
-
-
Ohndorf, U.M.1
Rould, M.A.2
He, Q.3
Pabo, C.O.4
Lippard, S.J.5
-
30
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
31
-
-
0032167424
-
Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
-
Parikh, S.S., Mol, C.D., Slupphaug, G., Bharati, S., Krokan, H.E. and Tainer, J.A. (1998) Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J., 17, 5214-5226.
-
(1998)
EMBO J.
, vol.17
, pp. 5214-5226
-
-
Parikh, S.S.1
Mol, C.D.2
Slupphaug, G.3
Bharati, S.4
Krokan, H.E.5
Tainer, J.A.6
-
32
-
-
0029836483
-
Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase β by X-ray structural analysis
-
Pelletier, H. and Sawaya, M.R. (1996) Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase β by X-ray structural analysis. Biochemistry, 35, 12778-12787.
-
(1996)
Biochemistry
, vol.35
, pp. 12778-12787
-
-
Pelletier, H.1
Sawaya, M.R.2
-
34
-
-
0032555065
-
4-ethenocytosine, a highly mutagenic adduct, is a primary substrate for Escherichia coli double-stranded uracil-DNA glycosylase and human mismatch-specific thymine-DNA glycosylase
-
4-ethenocytosine, a highly mutagenic adduct, is a primary substrate for Escherichia coli double-stranded uracil-DNA glycosylase and human mismatch-specific thymine-DNA glycosylase. Proc. Natl Acad. Sci. USA, 95, 8508-8513.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 8508-8513
-
-
Saparbaev, M.1
Laval, J.2
-
36
-
-
0038342180
-
Specific binding of a designed pyrrolidine abasic site analog to multiple DNA glycosylases
-
Schärer, O.D., Nash, H.M., Jiricny, J., Laval, J. and Verdine, G.L. (1998) Specific binding of a designed pyrrolidine abasic site analog to multiple DNA glycosylases. J. Biol. Chem., 273, 8592-8597.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 8592-8597
-
-
Schärer, O.D.1
Nash, H.M.2
Jiricny, J.3
Laval, J.4
Verdine, G.L.5
-
37
-
-
0028287938
-
Transition state analysis and inhibitor design for enzymatic reactions
-
Schramm, V.L., Horenstein, B.A. and Kline, P.C. (1994) Transition state analysis and inhibitor design for enzymatic reactions. J. Biol. Chem., 269, 18259-18262.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18259-18262
-
-
Schramm, V.L.1
Horenstein, B.A.2
Kline, P.C.3
-
38
-
-
11944256494
-
Catalytic mechanisms of enzymic glycosyl transfer
-
Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev., 90, 1171-1202.
-
(1990)
Chem. Rev.
, vol.90
, pp. 1171-1202
-
-
Sinnott, M.L.1
-
39
-
-
0029904839
-
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
Slupphaug, G., Mol, C.D., Kavli, B., Arvai, A.S., Krokan, H.E. and Tainer, J.A. (1996) A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature, 384, 87-92.
-
(1996)
Nature
, vol.384
, pp. 87-92
-
-
Slupphaug, G.1
Mol, C.D.2
Kavli, B.3
Arvai, A.S.4
Krokan, H.E.5
Tainer, J.A.6
-
40
-
-
0029132769
-
Studies on the catalytic mechanism of five DNA glycosylases. Probing for enzyme-DNA imino intermediates
-
Sun, B., Latham, K.A., Dodson, M.L. and Lloyd, R.S. (1995) Studies on the catalytic mechanism of five DNA glycosylases. Probing for enzyme-DNA imino intermediates. J. Biol. Chem., 270, 19501-19508.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 19501-19508
-
-
Sun, B.1
Latham, K.A.2
Dodson, M.L.3
Lloyd, R.S.4
-
41
-
-
0029119097
-
Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure
-
Thayer, M.M. Ahern, H., Xing, D., Cunningham, R.P. and Tainer, J.A. (1995) Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure. EMBO J., 14, 4108-1120.
-
(1995)
EMBO J.
, vol.14
, pp. 4108-11120
-
-
Thayer, M.M.1
Ahern, H.2
Xing, D.3
Cunningham, R.P.4
Tainer, J.A.5
-
42
-
-
0020060168
-
Two DNA glycosylases in Escherichia coli which release primarily 3-methyladenine
-
Thomas, L., Yang, C.H. and Goldthwait, D.A. (1982) Two DNA glycosylases in Escherichia coli which release primarily 3-methyladenine. Biochemistry, 21, 1162-1169.
-
(1982)
Biochemistry
, vol.21
, pp. 1162-1169
-
-
Thomas, L.1
Yang, C.H.2
Goldthwait, D.A.3
-
43
-
-
0028863468
-
Atomic model of a pyrimidine dimer excision repair enzyme complexed with a dna substrate: Structural basis for damaged DNA recognition
-
Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E. and Morikawa, K. (1995) Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition. Cell, 83, 773-782.
-
(1995)
Cell
, vol.83
, pp. 773-782
-
-
Vassylyev, D.G.1
Kashiwagi, T.2
Mikami, Y.3
Ariyoshi, M.4
Iwai, S.5
Ohtsuka, E.6
Morikawa, K.7
-
44
-
-
0033180391
-
3-methyladenine DNA glycosylases: Structure, function and biological importance
-
Wyatt, M.D., Allan, J.M., Lau, A.Y., Ellenberger, T.E. and Samson, L.D. (1999) 3-Methyladenine DNA glycosylases: structure, function and biological importance. BioEssays, 21, 668-676.
-
(1999)
BioEssays
, vol.21
, pp. 668-676
-
-
Wyatt, M.D.1
Allan, J.M.2
Lau, A.Y.3
Ellenberger, T.E.4
Samson, L.D.5
-
45
-
-
16044372779
-
Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli
-
Yamagata, Y. et al. (1996) Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli. Cell, 86, 311-319.
-
(1996)
Cell
, vol.86
, pp. 311-319
-
-
Yamagata, Y.1
|