A Residue in MutY Important for Catalysis Identified by Photocross-Linking and Mass Spectrometry

Biochemistry

Volumn 43, Issue 3, 2004, Pages 651-662

  Chepanoske, Cindy Lou ^a,b   Lukianova, Olga A ^a   Lombard, Murielle ^a,c   Golinelli Cohen, Marie Pierre ^a,d   David, Sheila S ^a  

^a UNIVERSITY OF UTAH   (United States)

^b Prolexys Pharmaceuticals   (United States)

^c AIX MARSEILLE UNIVERSITY   (France)

^d CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; CHEMICAL MODIFICATION; CROSSLINKING; DNA; ENZYMES; IONIZATION; IRON; MASS SPECTROMETRY; MUTAGENESIS; SULFUR;

BASE EXCISION REPAIR (BER); ELECTROSPRAY IONIZATION (ESI);

BIOCHEMISTRY;

2' DEOXY 2' FLUOROADENOSINE; 4 THIOTHYMIDINE; 7,8 DIHYDRO 8 OXO 2' DEOXYGUANOSINE; ADENINE GLYCOSYLASE; ALANINE; AMINO ACID; ARGININE; DEOXYGUANOSINE DERIVATIVE; DNA; DNA GLYCOSYLASE MUTY; DNA GLYCOSYLTRANSFERASE; DOUBLE STRANDED DNA; EXODEOXYRIBONUCLEASE III; IRON SULFUR PROTEIN; NUCLEOTIDE; UNCLASSIFIED DRUG;

ARTICLE; BASE MISPAIRING; CATALYSIS; CROSS LINKING; DNA BINDING; DNA BINDING MOTIF; ENZYME ACTIVITY; ENZYME SUBSTRATE; EXCISION REPAIR; MASS SPECTROMETRY; MULTIGENE FAMILY; PHOTOREACTIVITY; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN FUNCTION; PROTEIN MODIFICATION; PROTEIN MOTIF; SITE DIRECTED MUTAGENESIS; TANDEM MASS SPECTROMETRY;

ALANINE; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARGININE; BASE PAIR MISMATCH; CATALYSIS; CHROMATOGRAPHY, LIQUID; CROSS-LINKING REAGENTS; DNA GLYCOSYLASES; DNA, BACTERIAL; ESCHERICHIA COLI PROTEINS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; NUCLEIC ACID HETERODUPLEXES; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SUBSTRATE SPECIFICITY; THYMIDINE; ULTRAVIOLET RAYS;

ZIZIPHUS MAURITIANA;

EID: 1642494901     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi035537e     Document Type: Article

References (54)

1. de Boer, J., Andressoo, J. O., de Wit, J., Huijmans, J., Beems, R. B., van Steeg, H., Weeda, G., van der Horst, G. T. J., van Leeuwen, W., Themmen, A. P. N., Merdaji, M., and Hoeijmakers, J. H. J. (2002) Science 296, 1276-1279.
2. Farr, S. B., and Kogoma, T. (1991) Microbiol. Rev. 55, 561-585.
3. Newcomb, T. G., and Loeb, L. A. (1998) in DNA Damage and Repair (Nickoloff, J. A., and Hoekstra, M. F., Eds.) pp 65-84, Humana Press, Inc., Totowa, NJ.
4. Steenken, S., and Jovanovic, S. (1997) J. Am. Chem. Soc. 119, 617-618.
5. Dizdaroglu, M. (1991) Free Rad. Biol. Med. 10, 225-242.
6. Shibutani, S., Takeshita, M., and Grollman, A. P. (1991) Nature 349, 431-434.
7. David, S. S., and Williams, S. D. (1998) Chem. Rev. 98, 1221-1261.
8. Miller, J. H. (1998) in DNA Damage and Repair (Nickoloff, J. A., and Hoekstra, M. F., Eds.) pp 97-105, Humana Press, Inc., Totowa, NJ.
9. Michaels, M. L., Tchou, J., Grollman, A. P., and Miller, J. H. (1992) Biochemistry 31, 10964-10968.
10. Michaels, M. L., and Miller, J. H. (1992) J. Bacteriol. 174, 6321-6325.
11. Michaels, M. L., Cruz, C., Grollman, A. P., and Miller, J. H. (1992) Proc. Natl. Acad. Sci. U.S.A. 89. 7022-7025.
12. Al-Tassan, N., Chmiel, N. H., Maynard, J., Fleming, N., Livingston, A. L., Williams, G. T., Hodges, A. K., Rhodri-Davies, D., David, S. S., Sampson, J. R., and Cheadle, J. P. (2002) Nature Gen. 30, 227-232.
13. Au, K. G., Clark, S., Miller, J. H., and Modrich, P. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 8877-8881.
14. Radicella, J. P., Clark, E. A., and Fox, M. S. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 9674-9678.
15. Tsai-Wu, J.-J., Liu, H.-F., and Lu, A.-L. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 8779-8783.
16. Noll, D. M., Gogos, A., Granek, J. A., and Clarke, N. D. (1999) Biochemistry 38, 6374-6379.
17. Volk, D. E., House, P. G., Thiviyanathan, V., Luxon, B. A., Zhang, S., Lloyd, R. S., and Gorenstein, D. G. (2000) Biochemistry 39, 7331-7336.
18. Chmiel, N. H., Golinelli, M.-P., Francis, A. W., and David, S. S. (2001) Nucleic Acids Res. 29, 553-564.
19. Guan, Y., Manuel, R. C., Arvai, A. S., Parikh, S. S., Mol, C. D., Miller, J. H., Lloyd, R. S., and Tainer, J. A. (1998) Nat. Struct. Biol. 5, 1058-1064.
20. Thayer, M. M., Ahern, H., Xing, D., Cunningham, R. P., and Tainer, J. A. (1995) EMBO J. 14, 4108-4120.
21. Chepanoske, C. L., Golinelli, M.-P., Williams, S. D., and David, S. S. (2000) Arch. Biochem. Biophys. 380, 11-19.
22. Verdine, G. L., and Bruner, S. D. (1997) Chem. Biol. 4, 329-334.
23. Porello, S. L., Leyes, A. E., and David, S. S. (1998) Biochemistry 37, 14756-14764.
24. Francis, A. W., and David, S. S. (2002) Biochemistry 42, 801-810.
25. Hickerson, R. P., Chepanoske, C. L., Williams, S. D., David, S. S., and Burrows, C. J. (1999) J. Am. Chem Soc. 121, 9901-9902.
26. Boon, E. M., Pope, M. A., Williams, S. D., David, S. S., and Barton, J. K. (2002) Biochemistry 41, 8464-8470.
27. Zharkov, D. O., and Grollman, A. P. (1998) Biochemistry 37, 12384-12394.
28. Williams, S. D., and David, S. S. (1999) Biochemistry 38, 15417-15424.
29. Meisenheimer, K. M., and Koch, T. H. (1997) Crit. Rev. Biochem. Mol. Biol. 32, 101-140.
30. Favre, A., Saintome, C., Fourrey, J. L., Clivio, P., and Laugaa, P. (1998) Photochem. Photobiol. 42, 109-142.
31. Kubareva, E. A., Volkov, E. M., Vinogradova, N. L., Kanevsky, I. A., Oretskaya, T. S., Kuznetsova, S. A., Brevnov, M. G., Gromova, E. S., Nevinsky, G. A., and Shabarova, Z. A. (1995) Gene 157, 167-171.
32. Wang, Z., Huq, I., and Rana, T. M. (1999) Bioconjugate Chem. 10, 512-519.
33. Liu, J., Fan, Q. R., Sodeoka, M., Lane, W. S., and Verdine, G. L. (1994) Chem. Biol. 1, 47-55.
34. Wong, D. L., and Reich, N. O. (2000) Biochemistry 39, 15410-15417.
35. Golinelli, M.-P., Chmiel, N. H., and David, S. S. (1999) Biochemistry 38, 6997-7007.
36. Cupples, C. G., and Miller, J. H. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 5345-5349.
37. Yi-Brunozzi, H.-Y., Easterwood, L., Kamilar, G., and Beal, P. B. (1999) Nucleic Acids Res. 27, 2912-2917.
38. Leipold, M. D., Muller, J. G., Burrows, C. J., and David, S. S. (2000) Biochemistry 39, 14984-14992.
39. Bradford, M. M. (1976) Anal. Chem. 72, 248-254.
40. Hellman, U., Wernstedt, C., Gonez, J., and Heldin, C.-H. (1995) Anal. Biochem. 224, 451-455.
41. Golden, M. C., Resing, K. A., Collins, B. D., Willis, M. C., and Koch, T. H. (1999) Protein Sci. 8, 2806-2812.
42. Carey, J. (1991) Methods Enzymol. 208, 103-117.
43. Chepanoske, C. L., Porello, S. P., Fujiwara, T., Sugiyama, H., and David, S. S. (1999) Nucleic Acids Res. 27, 3197-3204.
44. Porello, S. L., Williams, S. D., Kuhn, H., Michaels, M. L., and David, S. S. (1996) J. Am. Chem. Soc. 118, 10684-10692.
45. Chepanoske, C. L., Langelier, C. R., Chmiel, N. H., and David, S. S. (2000) Org. Lett. 2, 1341-1344.
46. Kuhn, H., Smith, D. P., and David, S. S. (1995) J. Org. Chem. 60, 7094-7095.
47. Connor, D. A., Fallick, A. M., and Shetlar, M. D. (1998) Photochem. Photobiol. 68, 1-8.
48. Favre, A. (1990) Bioorganic Photochemistry, Vol. 1, John Wiley and Sons, New York.
49. McLuckey, S. A., and Habibi-Goudarzi, S. (1993) J. Am. Chem. Soc. 115, 12085-12095.
50. Biemann, K. (1990) Methods. Enzmol. 193, 886-887.
51. Kubareva, E. A., Thole, H., Karyagina, A. S., Oretskaya, T. S., Pingoud, A., and Pingoud, V. (2000) Nucleic Acids Res. 28, 1085-1091.
52. Chmiel, N. H., Livingston, A. L., and David, S. S. (2003) J. Mol. Biol. 327, 431-443.
53. Bernards, A. S., Miller, J. K., Bao, K. K., and Wong, I. (2002) J. Biol. Chem. 277, 20960-20964.
54. Fromme, J. C., and Verdine, G. L. (2003) EMBO J. 22, 3461-3471.