-
1
-
-
85019668203
-
Tracking the evolution of non-small-cell lung cancer
-
Jamal-Hanjani, M. et al. Tracking the evolution of non-small-cell lung cancer. N. Engl. J. Med. 376, 2109-2121 (2017).
-
(2017)
N. Engl. J. Med
, vol.376
, pp. 2109-2121
-
-
Jamal-Hanjani, M.1
-
2
-
-
84963585216
-
Metastasis as an evolutionary process
-
Turajlic, S. & Swanton, C. Metastasis as an evolutionary process. Science 352, 169-175 (2016).
-
(2016)
Science
, vol.352
, pp. 169-175
-
-
Turajlic, S.1
Swanton, C.2
-
3
-
-
40849096242
-
Examining the link between chromosomal instability and aneuploidy in human cells
-
Thompson, S. L. & Compton, D. A. Examining the link between chromosomal instability and aneuploidy in human cells. J. Cell Biol. 180, 665-672 (2008).
-
(2008)
J. Cell Biol
, vol.180
, pp. 665-672
-
-
Thompson, S.L.1
Compton, D.A.2
-
4
-
-
0035972237
-
Merotelic kinetochore orientation is a major mechanism of aneuploidy in mitotic mammalian tissue cells
-
Cimini, D. et al. Merotelic kinetochore orientation is a major mechanism of aneuploidy in mitotic mammalian tissue cells. J. Cell Biol. 153, 517-527 (2001).
-
(2001)
J. Cell Biol
, vol.153
, pp. 517-527
-
-
Cimini, D.1
-
5
-
-
84894327170
-
The mitotic origin of chromosomal instability
-
Bakhoum, S. F. et al. The mitotic origin of chromosomal instability. Curr. Biol. 24, R148-R149 (2014).
-
(2014)
Curr. Biol
, vol.24
, pp. R148-R149
-
-
Bakhoum, S.F.1
-
6
-
-
84938555783
-
Numerical chromosomal instability mediates susceptibility to radiation treatment
-
Bakhoum, S. F. et al. Numerical chromosomal instability mediates susceptibility to radiation treatment. Nat. Commun. 6, 5990 (2015).
-
(2015)
Nat. Commun
, vol.6
, pp. 5990
-
-
Bakhoum, S.F.1
-
7
-
-
58149334818
-
Genome stability is ensured by temporal control of kinetochore-microtubule dynamics
-
Bakhoum, S. F., Thompson, S. L., Manning, A. L. & Compton, D. A. Genome stability is ensured by temporal control of kinetochore-microtubule dynamics. Nat. Cell Biol. 11, 27-35 (2009).
-
(2009)
Nat. Cell Biol
, vol.11
, pp. 27-35
-
-
Bakhoum, S.F.1
Thompson, S.L.2
Manning, A.L.3
Compton, D.A.4
-
8
-
-
84874362586
-
Replication stress links structural and numerical cancer chromosomal instability
-
Burrell, R. A. et al. Replication stress links structural and numerical cancer chromosomal instability. Nature 494, 492-496 (2013).
-
(2013)
Nature
, vol.494
, pp. 492-496
-
-
Burrell, R.A.1
-
9
-
-
84946215072
-
Genomic characterization of brain metastases reveals branched evolution and potential therapeutic targets
-
Brastianos, P. K. et al. Genomic characterization of brain metastases reveals branched evolution and potential therapeutic targets. Cancer Discov. 5, 1164-1177 (2015).
-
(2015)
Cancer Discov
, vol.5
, pp. 1164-1177
-
-
Brastianos, P.K.1
-
11
-
-
2342492313
-
Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression
-
Chung, C. H. et al. Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression. Cancer Cell 5, 489-500 (2004).
-
(2004)
Cancer Cell
, vol.5
, pp. 489-500
-
-
Chung, C.H.1
-
12
-
-
18844410038
-
MCAK associates with the tips of polymerizing microtubules
-
Moore, A. T. et al. MCAK associates with the tips of polymerizing microtubules. J. Cell Biol. 169, 391-397 (2005).
-
(2005)
J. Cell Biol
, vol.169
, pp. 391-397
-
-
Moore, A.T.1
-
13
-
-
77949489741
-
Kinesin-13s in mitosis: Key players in the spatial and temporal organization of spindle microtubules
-
Ems-McClung, S. C. & Walczak, C. E. Kinesin-13s in mitosis: key players in the spatial and temporal organization of spindle microtubules. Semin. Cell Dev. Biol. 21, 276-282 (2010).
-
(2010)
Semin. Cell Dev. Biol
, vol.21
, pp. 276-282
-
-
Ems-McClung, S.C.1
Walczak, C.E.2
-
14
-
-
0033130049
-
Microtubule growth activates Rac1 to promote lamellipodial protrusion in fibroblasts
-
Waterman-Storer, C. M., Worthylake, R. A., Liu, B. P., Burridge, K. & Salmon, E. D. Microtubule growth activates Rac1 to promote lamellipodial protrusion in fibroblasts. Nat. Cell Biol. 1, 45-50 (1999).
-
(1999)
Nat. Cell Biol
, vol.1
, pp. 45-50
-
-
Waterman-Storer, C.M.1
Worthylake, R.A.2
Liu, B.P.3
Burridge, K.4
Salmon, E.D.5
-
15
-
-
33845986330
-
Mad2 overexpression promotes aneuploidy and tumorigenesis in mice
-
Sotillo, R. et al. Mad2 overexpression promotes aneuploidy and tumorigenesis in mice. Cancer Cell 11, 9-23 (2007).
-
(2007)
Cancer Cell
, vol.11
, pp. 9-23
-
-
Sotillo, R.1
-
16
-
-
79151483638
-
An online survival analysis tool to rapidly assess the effect of 22, 277 genes on breast cancer prognosis using microarray data of 1, 809 patients
-
Gyffy, B. et al. An online survival analysis tool to rapidly assess the effect of 22, 277 genes on breast cancer prognosis using microarray data of 1, 809 patients. Breast Cancer Res. Treat. 123, 725-731 (2010).
-
(2010)
Breast Cancer Res. Treat
, vol.123
, pp. 725-731
-
-
Gyffy, B.1
-
17
-
-
79955798310
-
A genomic predictor of response and survival following taxane-Anthracycline chemotherapy for invasive breast cancer
-
Hatzis, C. et al. A genomic predictor of response and survival following taxane-Anthracycline chemotherapy for invasive breast cancer. J. Am. Med. Assoc. 305, 1873-1881 (2011).
-
(2011)
J. Am. Med. Assoc
, vol.305
, pp. 1873-1881
-
-
Hatzis, C.1
-
18
-
-
84899077215
-
Cytosolic-DNA-mediated, STING-dependent proinflammatory gene induction necessitates canonical NF-κ B activation through TBK1
-
Abe, T. & Barber, G. N. Cytosolic-DNA-mediated, STING-dependent proinflammatory gene induction necessitates canonical NF-κ B activation through TBK1. J. Virol. 88, 5328-5341 (2014).
-
(2014)
J. Virol
, vol.88
, pp. 5328-5341
-
-
Abe, T.1
Barber, G.N.2
-
19
-
-
84873711885
-
Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type i interferon pathway
-
Sun, L., Wu, J., Du, F., Chen, X. & Chen, Z. J. Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway. Science 339, 786-791 (2013).
-
(2013)
Science
, vol.339
, pp. 786-791
-
-
Sun, L.1
Wu, J.2
Du, F.3
Chen, X.4
Chen, Z.J.5
-
20
-
-
84879956366
-
Catastrophic nuclear envelope collapse in cancer cell micronuclei
-
Hatch, E. M., Fischer, A. H., Deerinck, T. J. & Hetzer, M. W. Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell 154, 47-60 (2013).
-
(2013)
Cell
, vol.154
, pp. 47-60
-
-
Hatch, E.M.1
Fischer, A.H.2
Deerinck, T.J.3
Hetzer, M.W.4
-
21
-
-
84910031744
-
Inflammation-driven carcinogenesisis mediated through STING
-
Ahn, J. et al. Inflammation-driven carcinogenesisis mediated through STING. Nat. Commun. 5, 5166 (2014).
-
(2014)
Nat. Commun
, vol.5
, pp. 5166
-
-
Ahn, J.1
-
22
-
-
85028304716
-
Mitotic progression following DNA damage enables pattern recognition within micronuclei
-
Harding, S. M. et al. Mitotic progression following DNA damage enables pattern recognition within micronuclei. Nature 548, 466-470 (2017).
-
(2017)
Nature
, vol.548
, pp. 466-470
-
-
Harding, S.M.1
-
23
-
-
85028315246
-
CGAS surveillance of micronuclei links genome instability to innate immunity
-
Mackenzie, K. J. et al. cGAS surveillance of micronuclei links genome instability to innate immunity. Nature 548, 461-465 (2017).
-
(2017)
Nature
, vol.548
, pp. 461-465
-
-
Mackenzie, K.J.1
-
24
-
-
84907996785
-
Dnase2a deficiency uncovers lysosomal clearance of damaged nuclear DNA via autophagy
-
Lan, Y. Y., Londo, D., Bouley, R., Rooney, M. S. & Hacohen, N. Dnase2a deficiency uncovers lysosomal clearance of damaged nuclear DNA via autophagy. Cell Reports 9, 180-192 (2014).
-
(2014)
Cell Reports
, vol.9
, pp. 180-192
-
-
Lan, Y.Y.1
Londo, D.2
Bouley, R.3
Rooney, M.S.4
Hacohen, N.5
-
25
-
-
84961613728
-
Nuclear envelope rupture and repair during cancer cell migration
-
Denais, C. M. et al. Nuclear envelope rupture and repair during cancer cell migration. Science 352, 353-358 (2016).
-
(2016)
Science
, vol.352
, pp. 353-358
-
-
Denais, C.M.1
-
26
-
-
85002398053
-
Selective y centromere inactivation triggers chromosome shattering in micronuclei and repair by non-homologous end joining
-
Ly, P. et al. Selective Y centromere inactivation triggers chromosome shattering in micronuclei and repair by non-homologous end joining. Nat. Cell Biol. 19, 68-75 (2017).
-
(2017)
Nat. Cell Biol
, vol.19
, pp. 68-75
-
-
Ly, P.1
-
27
-
-
85020284517
-
CGAS is essential for cellular senescence
-
Yang, H., Wang, H., Ren, J., Chen, Q. & Chen, Z. J. cGAS is essential for cellular senescence. Proc. Natl Acad. Sci. USA 114, E4612-E4620 (2017).
-
(2017)
Proc. Natl Acad. Sci. USA
, vol.114
, pp. E4612-E4620
-
-
Yang, H.1
Wang, H.2
Ren, J.3
Chen, Q.4
Chen, Z.J.5
-
28
-
-
49549100511
-
Trex1 prevents cell-intrinsic initiation of autoimmunity
-
Stetson, D. B., Ko, J. S., Heidmann, T. & Medzhitov, R. Trex1 prevents cell-intrinsic initiation of autoimmunity. Cell 134, 587-598 (2008).
-
(2008)
Cell
, vol.134
, pp. 587-598
-
-
Stetson, D.B.1
Ko, J.S.2
Heidmann, T.3
Medzhitov, R.4
-
29
-
-
84945353895
-
DNA tumor virus oncogenes antagonize the cGAS-STING DNA-sensing pathway
-
Lau, L., Gray, E. E., Brunette, R. L. & Stetson, D. B. DNA tumor virus oncogenes antagonize the cGAS-STING DNA-sensing pathway. Science 350, 568-571 (2015).
-
(2015)
Science
, vol.350
, pp. 568-571
-
-
Lau, L.1
Gray, E.E.2
Brunette, R.L.3
Stetson, D.B.4
-
30
-
-
85031901650
-
Cytoplasmic chromatin triggers inflammation in senescence and cancer
-
Dou, Z. et al. Cytoplasmic chromatin triggers inflammation in senescence and cancer. Nature 550, 402-406 (2017).
-
(2017)
Nature
, vol.550
, pp. 402-406
-
-
Dou, Z.1
-
31
-
-
77953835976
-
Controlling the fate of NIK: A central stage in noncanonical NF-κB signaling
-
Sun, S.-C. Controlling the fate of NIK: a central stage in noncanonical NF-κB signaling. Sci. Signal. 3, pe18 (2010).
-
(2010)
Sci. Signal
, vol.3
, pp. e18
-
-
Sun, S.-C.1
-
32
-
-
84971237993
-
Carcinoma-Astrocyte gap junctions promote brain metastasis by cGAMP transfer
-
Chen, Q. et al. Carcinoma-Astrocyte gap junctions promote brain metastasis by cGAMP transfer. Nature 533, 493-498 (2016).
-
(2016)
Nature
, vol.533
, pp. 493-498
-
-
Chen, Q.1
-
33
-
-
34047095373
-
Oestrogen signalling inhibits invasive phenotype by repressing RelB and its target BCL2
-
Wang, X. et al. Oestrogen signalling inhibits invasive phenotype by repressing RelB and its target BCL2. Nat. Cell Biol. 9, 470-478 (2007).
-
(2007)
Nat. Cell Biol
, vol.9
, pp. 470-478
-
-
Wang, X.1
-
34
-
-
84978409950
-
The NF-κ B subunit RelB regulates the migration and invasion abilities and the radio-sensitivity of prostate cancer cells
-
Wang, J., Yi, S., Zhou, J., Zhang, Y. & Guo, F. The NF-κ B subunit RelB regulates the migration and invasion abilities and the radio-sensitivity of prostate cancer cells. Int. J. Oncol. 49, 381-392 (2016).
-
(2016)
Int. J. Oncol
, vol.49
, pp. 381-392
-
-
Wang, J.1
Yi, S.2
Zhou, J.3
Zhang, Y.4
Guo, F.5
-
35
-
-
84873915595
-
Antagonism of inhibitor of apoptosis proteins increases bone metastasis via unexpected osteoclast activation
-
Yang, C. et al. Antagonism of inhibitor of apoptosis proteins increases bone metastasis via unexpected osteoclast activation. Cancer Discov. 3, 212-223 (2013).
-
(2013)
Cancer Discov
, vol.3
, pp. 212-223
-
-
Yang, C.1
-
36
-
-
85028938697
-
Signalling strength determines proapoptotic functions of STING
-
Gulen, M. F. et al. Signalling strength determines proapoptotic functions of STING. Nat. Commun. 8, 427 (2017).
-
(2017)
Nat. Commun
, vol.8
, pp. 427
-
-
Gulen, M.F.1
-
37
-
-
80051634691
-
Cytosolic DNA-Activated human dendritic cells are potent activators of the adaptive immune response
-
Kis-Toth, K., Szanto, A., Thai, T. H. & Tsokos, G. C. Cytosolic DNA-Activated human dendritic cells are potent activators of the adaptive immune response. J. Immunol. 187, 1222-1234 (2011).
-
(2011)
J. Immunol
, vol.187
, pp. 1222-1234
-
-
Kis-Toth, K.1
Szanto, A.2
Thai, T.H.3
Tsokos, G.C.4
-
38
-
-
85009785424
-
Single-chromosome gains commonly function as tumor suppressors
-
Sheltzer, J. M. et al. Single-chromosome gains commonly function as tumor suppressors. Cancer Cell 31, 240-255 (2017).
-
(2017)
Cancer Cell
, vol.31
, pp. 240-255
-
-
Sheltzer, J.M.1
-
39
-
-
33846065784
-
Aneuploidy acts both oncogenically and as a tumor suppressor
-
Weaver, B. A. A., Silk, A. D., Montagna, C., Verdier-Pinard, P. & Cleveland, D. W. Aneuploidy acts both oncogenically and as a tumor suppressor. Cancer Cell 11, 25-36 (2007).
-
(2007)
Cancer Cell
, vol.11
, pp. 25-36
-
-
Weaver, B.A.A.1
Silk, A.D.2
Montagna, C.3
Verdier-Pinard, P.4
Cleveland, D.W.5
-
40
-
-
84975124878
-
Negative selection and chromosome instability induced by Mad2 overexpression delay breast cancer but facilitate oncogene-independent outgrowth
-
Rowald, K. et al. Negative selection and chromosome instability induced by Mad2 overexpression delay breast cancer but facilitate oncogene-independent outgrowth. Cell Reports 15, 2679-2691 (2016).
-
(2016)
Cell Reports
, vol.15
, pp. 2679-2691
-
-
Rowald, K.1
-
41
-
-
85027893400
-
Integrative clinical genomics of metastatic cancer
-
Robinson, D. R. et al. Integrative clinical genomics of metastatic cancer. Nature 548, 297-303 (2017).
-
(2017)
Nature
, vol.548
, pp. 297-303
-
-
Robinson, D.R.1
-
42
-
-
84887145591
-
A transcriptional and metabolic signature of primary aneuploidy is present in chromosomally unstable cancer cells and informs clinical prognosis
-
Sheltzer, J. M. A transcriptional and metabolic signature of primary aneuploidy is present in chromosomally unstable cancer cells and informs clinical prognosis. Cancer Res. 73, 6401-6412 (2013).
-
(2013)
Cancer Res
, vol.73
, pp. 6401-6412
-
-
Sheltzer, J.M.1
-
43
-
-
84962301577
-
Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade
-
McGranahan, N. et al. Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade. Science 351, 1463-1469 (2016).
-
(2016)
Science
, vol.351
, pp. 1463-1469
-
-
McGranahan, N.1
-
44
-
-
84055176499
-
Chromosomal instability substantiates poor prognosis in patients with diffuse large B-cell lymphoma
-
Bakhoum, S. F., Danilova, O. V., Kaur, P., Levy, N. B. & Compton, D. A. Chromosomal instability substantiates poor prognosis in patients with diffuse large B-cell lymphoma. Clin. Cancer Res. 17, 7704-7711 (2011).
-
(2011)
Clin. Cancer Res
, vol.17
, pp. 7704-7711
-
-
Bakhoum, S.F.1
Danilova, O.V.2
Kaur, P.3
Levy, N.B.4
Compton, D.A.5
-
45
-
-
84901333960
-
Chromosomal instability portends superior response of rectal adenocarcinoma to chemoradiation therapy
-
Zaki, B. I., Suriawinata, A. A., Eastman, A. R., Garner, K. M. & Bakhoum, S. F. Chromosomal instability portends superior response of rectal adenocarcinoma to chemoradiation therapy. Cancer 120, 1733-1742 (2014).
-
(2014)
Cancer
, vol.120
, pp. 1733-1742
-
-
Zaki, B.I.1
Suriawinata, A.A.2
Eastman, A.R.3
Garner, K.M.4
Bakhoum, S.F.5
-
46
-
-
84906933893
-
Nuclear deformability constitutes a rate-limiting step during cell migration in 3-D environments
-
Davidson, P. M., Denais, C., Bakshi, M. C. & Lammerding, J. Nuclear deformability constitutes a rate-limiting step during cell migration in 3-D environments. Cell. Mol. Bioeng. 7, 293-306 (2014).
-
(2014)
Cell. Mol. Bioeng
, vol.7
, pp. 293-306
-
-
Davidson, P.M.1
Denais, C.2
Bakshi, M.C.3
Lammerding, J.4
-
47
-
-
84860645682
-
Xenome-A tool for classifying reads from xenograft samples
-
Conway, T. et al. Xenome-A tool for classifying reads from xenograft samples. Bioinformatics 28, i172-i178 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. i172-i178
-
-
Conway, T.1
-
48
-
-
84871809302
-
STAR ultrafast universal RNA-seq aligner
-
Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
-
49
-
-
77952123055
-
Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
50
-
-
84928987900
-
HTSeq-A Python framework to work with high-throughput sequencing data
-
Anders, S., Pyl, P. T. & Huber, W. HTSeq-A Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
51
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
52
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA 102, 15545-15550 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
-
53
-
-
42449129710
-
Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions
-
De Preter, K., Barriot, R., Speleman, F., Vandesompele, J. & Moreau, Y. Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions. Nucleic Acids Res. 36, e43 (2008).
-
(2008)
Nucleic Acids Res
, vol.36
, pp. e43
-
-
De Preter, K.1
Barriot, R.2
Speleman, F.3
Vandesompele, J.4
Moreau, Y.5
-
54
-
-
84911374686
-
Circlize implements and enhances circular visualization in R
-
Gu, Z., Gu, L., Eils, R., Schlesner, M. & Brors, B. circlize implements and enhances circular visualization in R. Bioinformatics 30, 2811-2812 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 2811-2812
-
-
Gu, Z.1
Gu, L.2
Eils, R.3
Schlesner, M.4
Brors, B.5
-
55
-
-
85009446777
-
Massively parallel digital transcriptional profiling of single cells
-
Zheng, G. X. Y. et al. Massively parallel digital transcriptional profiling of single cells. Nat. Commun. 8, 14049 (2017).
-
(2017)
Nat. Commun
, vol.8
, pp. 14049
-
-
Zheng, G.X.Y.1
-
57
-
-
84934442835
-
Data-driven phenotypic dissection of AML reveals progenitorlike cells that correlate with prognosis
-
Levine, J. H. et al. Data-driven phenotypic dissection of aml reveals progenitorlike cells that correlate with prognosis. Cell 162, 184-197 (2015).
-
(2015)
Cell
, vol.162
, pp. 184-197
-
-
Levine, J.H.1
-
58
-
-
84893181929
-
Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer
-
Gyorffy, B., Surowiak, P., Budczies, J. & Lczky, A. Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer. PLoS ONE 8, e82241 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e82241
-
-
Gyorffy, B.1
Surowiak, P.2
Budczies, J.3
Lczky, A.4
-
59
-
-
85017333736
-
Nextflow enables reproducible computational workflows
-
Di Tommaso, P. et al. Nextflow enables reproducible computational workflows. Nat. Biotechnol. 35, 316-319 (2017).
-
(2017)
Nat. Biotechnol
, vol.35
, pp. 316-319
-
-
Di Tommaso, P.1
|