-
1
-
-
54949097443
-
Automated vision-based selection and placement of single cells in microwell array formats
-
Xian
-
Anis, Y. H., Holl, M. R., and Meldrum, D. R. (2008). "Automated vision-based selection and placement of single cells in microwell array formats," in IEEE International Conference on Automation Science and Engineering, Xian. doi: 10.1109/COASE.2008.4626575
-
(2008)
IEEE International Conference on Automation Science and Engineering
-
-
Anis, Y.H.1
Holl, M.R.2
Meldrum, D.R.3
-
2
-
-
85029688051
-
Compositions and methods for negative selection of non-desired nucleic acid sequences
-
Washington, DC: U.S. Patent and Trademark Office.
-
Armour, C., Amorese, D., Li, B., and Kurn, N. (2015). Compositions and methods for negative selection of non-desired nucleic acid sequences. U.S. Patent No 20150299767. Washington, DC: U.S. Patent and Trademark Office.
-
(2015)
-
-
Armour, C.1
Amorese, D.2
Li, B.3
Kurn, N.4
-
3
-
-
0023306185
-
Optical trapping and manipulation of viruses and bacteria
-
Ashkin, A., and Dziedzic, J. M. (1987). Optical trapping and manipulation of viruses and bacteria. Science 235, 1517-1520. doi: 10.1126/science.3547653
-
(1987)
Science
, vol.235
, pp. 1517-1520
-
-
Ashkin, A.1
Dziedzic, J.M.2
-
4
-
-
0022655537
-
Observation of a single-beam gradient force optical trap for dielectric particles
-
Ashkin, A., Dziedzic, J. M., Bjorkholm, J. E., and Chu, S. (1986). Observation of a single-beam gradient force optical trap for dielectric particles. Opt. Lett. 11:288. doi: 10.1364/OL.11.000288
-
(1986)
Opt. Lett
, vol.11
, pp. 288
-
-
Ashkin, A.1
Dziedzic, J.M.2
Bjorkholm, J.E.3
Chu, S.4
-
5
-
-
0023663919
-
Optical trapping and manipulation of single cells using infrared laser beams
-
Ashkin, A., Dziedzic, J. M., and Yamane, T. (1987). Optical trapping and manipulation of single cells using infrared laser beams. Nature 330, 769-771. doi: 10.1038/330769a0
-
(1987)
Nature
, vol.330
, pp. 769-771
-
-
Ashkin, A.1
Dziedzic, J.M.2
Yamane, T.3
-
6
-
-
84890387605
-
Nanopore-based identification of individual nucleotides for direct RNA sequencing
-
Ayub, M., Hardwick, S. W., Luisi, B. F., and Bayley, H. (2013). Nanopore-based identification of individual nucleotides for direct RNA sequencing. Nano Lett. 13, 6144-6150. doi: 10.1021/nl403469r
-
(2013)
Nano Lett.
, vol.13
, pp. 6144-6150
-
-
Ayub, M.1
Hardwick, S.W.2
Luisi, B.F.3
Bayley, H.4
-
7
-
-
84926331553
-
Design and analysis of actuated microneedles for robotic manipulation
-
Montreal, QC
-
Banerjee, S., Wang, W., and Gutschmidt, S. (2014). "Design and analysis of actuated microneedles for robotic manipulation," in ASME International Mechanical Engineering Congress and Exposition, Montreal, QC, 8-13. doi: 10.1115/imece2014-39308
-
(2014)
ASME International Mechanical Engineering Congress and Exposition
, pp. 8-13
-
-
Banerjee, S.1
Wang, W.2
Gutschmidt, S.3
-
8
-
-
77957746208
-
Genome-wide mutational diversity in an evolving population of Escherichia coli
-
Barrick, J. E., and Lenski, R. E. (2009). Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harb. Symp. Quant. Biol. 74, 119-129. doi: 10.1101/sqb.2009.74.018
-
(2009)
Cold Spring Harb. Symp. Quant. Biol.
, vol.74
, pp. 119-129
-
-
Barrick, J.E.1
Lenski, R.E.2
-
9
-
-
84888001845
-
Genome dynamics during experimental evolution
-
Barrick, J. E., and Lenski, R. E. (2013). Genome dynamics during experimental evolution. Nat. Rev. Genet. 14, 827-839. doi: 10.1038/nrg3564
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 827-839
-
-
Barrick, J.E.1
Lenski, R.E.2
-
10
-
-
84876122754
-
The future is now: single-cell genomics of bacteria and archaea
-
Blainey, P. C. (2013). The future is now: single-cell genomics of bacteria and archaea. FEMS Microbiol. Rev. 37, 407-427. doi: 10.1111/1574-6976.12015
-
(2013)
FEMS Microbiol. Rev.
, vol.37
, pp. 407-427
-
-
Blainey, P.C.1
-
11
-
-
79952351866
-
Digital MDA for enumeration of total nucleic acid contamination
-
Blainey, P. C., and Quake, S. R. (2011). Digital MDA for enumeration of total nucleic acid contamination. Nucleic Acids Res. 39, e19. doi: 10.1093/nar/gkq1074
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Blainey, P.C.1
Quake, S.R.2
-
12
-
-
0024335104
-
Highly efficient DNA synthesis by the phage phi 29 DNA polymerase
-
Blanco, L., Bernad, A., Lazaro, J. M., Martin, G., Garmendia, C., and Salas, M. (1989). Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication. J. Biol. Chem. 264, 8935-8940.
-
(1989)
Symmetrical mode of DNA replication. J. Biol. Chem.
, vol.264
, pp. 8935-8940
-
-
Blanco, L.1
Bernad, A.2
Lazaro, J.M.3
Martin, G.4
Garmendia, C.5
Salas, M.6
-
13
-
-
66149103946
-
Microbial oceanography in a sea of opportunity
-
Bowler, C., Karl, D. M., and Colwell, R. R. (2009). Microbial oceanography in a sea of opportunity. Nature 459, 180-184. doi: 10.1038/nature08056
-
(2009)
Nature
, vol.459
, pp. 180-184
-
-
Bowler, C.1
Karl, D.M.2
Colwell, R.R.3
-
14
-
-
84969704060
-
Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation
-
Browne, H. P., Forster, S. C., Anonye, B. O., Kumar, N., Neville, B. A., Stares, M. D., et al. (2016). Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation. Nature 533, 543-546. doi: 10.1038/nature17645
-
(2016)
Nature
, vol.533
, pp. 543-546
-
-
Browne, H.P.1
Forster, S.C.2
Anonye, B.O.3
Kumar, N.4
Neville, B.A.5
Stares, M.D.6
-
15
-
-
85020532249
-
Microfluidics as a strategic player to decipher single-cell omics?
-
Caen, O., Lu, H., Nizard, P., and Taly, V. (2017). Microfluidics as a strategic player to decipher single-cell omics? Trends Biotechnol. 35, 713-727. doi: 10.1016/j.tibtech.2017.05.004
-
(2017)
Trends Biotechnol.
, vol.35
, pp. 713-727
-
-
Caen, O.1
Lu, H.2
Nizard, P.3
Taly, V.4
-
16
-
-
57049171854
-
New tools for discovering and characterizing microbial diversity
-
Cardenas, E., and Tiedje, J. M. (2008). New tools for discovering and characterizing microbial diversity. Curr. Opin. Biotechnol. 19, 544-549. doi: 10.1016/j.copbio.2008.10.010
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 544-549
-
-
Cardenas, E.1
Tiedje, J.M.2
-
17
-
-
85018477462
-
Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)
-
Chen, C., Xing, D., Tan, L., Li, H., Zhou, G., Huang, L., et al. (2017). Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI). Science 356, 189-194. doi: 10.1126/science.aak9787
-
(2017)
Science
, vol.356
, pp. 189-194
-
-
Chen, C.1
Xing, D.2
Tan, L.3
Li, H.4
Zhou, G.5
Huang, L.6
-
18
-
-
84994288063
-
The application of single-cell sequencing in dynamic transcriptomes
-
ed. X. Wang (Dordrecht: Springer)
-
Chen, K., Dong, X., and Wu, J. (2015). "The application of single-cell sequencing in dynamic transcriptomes," in Single Cell Sequencing and Systems Immunology, ed. X. Wang (Dordrecht: Springer), 41-63. doi: 10.1007/978-94-017-9753-5_4
-
(2015)
Single Cell Sequencing and Systems Immunology
, pp. 41-63
-
-
Chen, K.1
Dong, X.2
Wu, J.3
-
19
-
-
84915747048
-
Comparison of multiple displacement amplification (MDA) and multiple annealing and looping-based amplification cycles (MALBAC) in single-cell sequencing
-
Chen, M., Song, P., Zou, D., Hu, X., Zhao, S., Gao, S., et al. (2014). Comparison of multiple displacement amplification (MDA) and multiple annealing and looping-based amplification cycles (MALBAC) in single-cell sequencing. PLOS ONE 9:e114520. doi: 10.1371/journal.pone.0114520
-
(2014)
PLOS ONE
, vol.9
-
-
Chen, M.1
Song, P.2
Zou, D.3
Hu, X.4
Zhao, S.5
Gao, S.6
-
20
-
-
0036324056
-
High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
-
Connon, S. A., and Giovannoni, S. J. (2002). High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68, 3878-3885. doi: 10.1128/AEM.68.8.3878-3885.2002
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3878-3885
-
-
Connon, S.A.1
Giovannoni, S.J.2
-
21
-
-
84871352308
-
Direct sequencing of small genomes on the Pacific Biosciences RS without library preparation
-
Coupland, P., Chandra, T., Quail, M., Reik, W., and Swerdlow, H. (2012). Direct sequencing of small genomes on the Pacific Biosciences RS without library preparation. Biotechniques 53, 365-372. doi: 10.2144/000113962
-
(2012)
Biotechniques
, vol.53
, pp. 365-372
-
-
Coupland, P.1
Chandra, T.2
Quail, M.3
Reik, W.4
Swerdlow, H.5
-
22
-
-
84978924337
-
Defining heterogeneity within bacterial populations via single cell approaches
-
Davis, K. M., and Isberg, R. R. (2016). Defining heterogeneity within bacterial populations via single cell approaches. Bioessays 38, 782-790. doi: 10.1002/bies.201500121
-
(2016)
Bioessays
, vol.38
, pp. 782-790
-
-
Davis, K.M.1
Isberg, R.R.2
-
23
-
-
79961102396
-
Single cell transcriptomics of neighboring hyphae of Aspergillus niger
-
de Bekker, C., Bruning, O., Jonker, M. J., Breit, T. M., and Wosten, H. A. (2011). Single cell transcriptomics of neighboring hyphae of Aspergillus niger. Genome Biol. 12:R71. doi: 10.1186/gb-2011-12-8-r71
-
(2011)
Genome Biol
, vol.12
, pp. R71
-
-
de Bekker, C.1
Bruning, O.2
Jonker, M.J.3
Breit, T.M.4
Wosten, H.A.5
-
24
-
-
84920645442
-
A quantitative comparison of single-cell whole genome amplification methods
-
de Bourcy, C. F., De Vlaminck, I., Kanbar, J. N., Wang, J., Gawad, C., and Quake, S. R. (2014). A quantitative comparison of single-cell whole genome amplification methods. PLOS ONE 9:e105585. doi: 10.1371/journal.pone.0105585
-
(2014)
PLOS ONE.
, vol.9
-
-
de Bourcy, C.F.1
De Vlaminck, I.2
Kanbar, J.N.3
Wang, J.4
Gawad, C.5
Quake, S.R.6
-
25
-
-
0034830935
-
Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification
-
Dean, F. B., Nelson, J. R., Giesler, T. L., and Lasken, R. S. (2001). Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 11, 1095-1099. doi: 10.1101/gr.180501
-
(2001)
Genome Res.
, vol.11
, pp. 1095-1099
-
-
Dean, F.B.1
Nelson, J.R.2
Giesler, T.L.3
Lasken, R.S.4
-
26
-
-
84934775012
-
Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method
-
Deleye, L., De Coninck, D., Christodoulou, C., Sante, T., Dheedene, A., Heindryckx, B., et al. (2015). Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method. Sci. Rep. 5:11711. doi: 10.1038/srep11711
-
(2015)
Sci. Rep
, vol.5
, pp. 11711
-
-
Deleye, L.1
De Coninck, D.2
Christodoulou, C.3
Sante, T.4
Dheedene, A.5
Heindryckx, B.6
-
27
-
-
33748058888
-
Bistability in bacteria
-
Dubnau, D., and Losick, R. (2006). Bistability in bacteria. Mol. Microbiol. 61, 564-572. doi: 10.1111/j.1365-2958.2006.05249.x
-
(2006)
Mol. Microbiol.
, vol.61
, pp. 564-572
-
-
Dubnau, D.1
Losick, R.2
-
28
-
-
0026588147
-
Analysis of gene expression in single live neurons
-
Eberwine, J., Yeh, H., Miyashiro, K., Cao, Y., Nair, S., Finnell, R., et al. (1992). Analysis of gene expression in single live neurons. Proc. Natl. Acad. Sci. U.S.A. 89, 3010-3014. doi: 10.1073/pnas.89.7.3010
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 3010-3014
-
-
Eberwine, J.1
Yeh, H.2
Miyashiro, K.3
Cao, Y.4
Nair, S.5
Finnell, R.6
-
29
-
-
0033802161
-
Sorting out bacterial viability with optical tweezers
-
Ericsson, M., Hanstorp, D., Hagberg, P., Enger, J., and Nystrom, T. (2000). Sorting out bacterial viability with optical tweezers. J. Bacteriol. 182, 5551-5555. doi: 10.1128/jb.182.19.5551-5555.2000
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5551-5555
-
-
Ericsson, M.1
Hanstorp, D.2
Hagberg, P.3
Enger, J.4
Nystrom, T.5
-
30
-
-
84922311090
-
Expression profiling
-
Fan, H. C., Fu, G. K., and Fodor, S. P. (2015). Expression profiling. Combinatorial labeling of single cells for gene expression cytometry. Science 347:1258367. doi: 10.1126/science.1258367
-
(2015)
Combinatorial labeling of single cells for gene expression cytometry. Science
, vol.347
, pp. 1258367
-
-
Fan, H.C.1
Fu, G.K.2
Fodor, S.P.3
-
31
-
-
84937703271
-
Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos
-
Fan, X., Zhang, X., Wu, X., Guo, H., Hu, Y., Tang, F., et al. (2015). Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos. Genome Biol. 16, 148. doi: 10.1186/s13059-015-0706-1
-
(2015)
Genome Biol.
, vol.16
, pp. 148
-
-
Fan, X.1
Zhang, X.2
Wu, X.3
Guo, H.4
Hu, Y.5
Tang, F.6
-
32
-
-
84925045058
-
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount
-
Field, E. K., Sczyrba, A., Lyman, A. E., Harris, C. C., Woyke, T., Stepanauskas, R., et al. (2015). Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount. ISME J. 9, 857-870. doi: 10.1038/ismej.2014.183
-
(2015)
ISME J.
, vol.9
, pp. 857-870
-
-
Field, E.K.1
Sczyrba, A.2
Lyman, A.E.3
Harris, C.C.4
Woyke, T.5
Stepanauskas, R.6
-
33
-
-
84942874388
-
Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification
-
Fu, Y., Li, C., Lu, S., Zhou, W., Tang, F., Xie, X. S., et al. (2015). Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification. Proc. Natl. Acad. Sci. U.S.A. 112, 11923-11928. doi: 10.1073/pnas.1513988112
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. 11923-11928
-
-
Fu, Y.1
Li, C.2
Lu, S.3
Zhou, W.4
Tang, F.5
Xie, X.S.6
-
34
-
-
79955094707
-
RT-qPCR based quantitative analysis of gene expression in single bacterial cells
-
Gao, W., Zhang, W., and Meldrum, D. R. (2011). RT-qPCR based quantitative analysis of gene expression in single bacterial cells. J. Microbiol. Methods 85, 221-227. doi: 10.1016/j.mimet.2011.03.008
-
(2011)
J. Microbiol. Methods
, vol.85
, pp. 221-227
-
-
Gao, W.1
Zhang, W.2
Meldrum, D.R.3
-
35
-
-
84958606331
-
Single-cell genome sequencing: current state of the science
-
Gawad, C., Koh, W., and Quake, S. R. (2016). Single-cell genome sequencing: current state of the science. Nat. Rev. Genet. 17, 175-188. doi: 10.1038/nrg.2015.16
-
(2016)
Nat. Rev. Genet.
, vol.17
, pp. 175-188
-
-
Gawad, C.1
Koh, W.2
Quake, S.R.3
-
36
-
-
84864873214
-
Transcriptome sequencing of single cells with Smart-Seq
-
Goetz, J. J., and Trimarchi, J. M. (2012). Transcriptome sequencing of single cells with Smart-Seq. Nat. Biotechnol. 30, 763-765. doi: 10.1038/nbt.2325
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 763-765
-
-
Goetz, J.J.1
Trimarchi, J.M.2
-
37
-
-
84978194729
-
Tunable single-cell extraction for molecular analyses
-
Guillaume-Gentil, O., Grindberg, R. V., Kooger, R., Dorwling-Carter, L., Martinez, V., Ossola, D., et al. (2016). Tunable single-cell extraction for molecular analyses. Cell 166, 506-516. doi: 10.1016/j.cell.2016.06.025
-
(2016)
Cell
, vol.166
, pp. 506-516
-
-
Guillaume-Gentil, O.1
Grindberg, R.V.2
Kooger, R.3
Dorwling-Carter, L.4
Martinez, V.5
Ossola, D.6
-
38
-
-
85011957259
-
Genetic interaction mapping with microfluidic-based single cell sequencing
-
Haliburton, J. R., Shao, W., Deutschbauer, A., Arkin, A., and Abate, A. R. (2017). Genetic interaction mapping with microfluidic-based single cell sequencing. PLOS ONE 12:e0171302. doi: 10.1371/journal.pone.0171302
-
(2017)
PLOS ONE
, vol.12
-
-
Haliburton, J.R.1
Shao, W.2
Deutschbauer, A.3
Arkin, A.4
Abate, A.R.5
-
39
-
-
84885345802
-
Lysis of a single cyanobacterium for whole genome amplification
-
Hall, E. W., Kim, S., Appadoo, V., and Zare, R. N. (2013). Lysis of a single cyanobacterium for whole genome amplification. Micromachines 4, 321-332. doi: 10.3390/mi4030321
-
(2013)
Micromachines
, vol.4
, pp. 321-332
-
-
Hall, E.W.1
Kim, S.2
Appadoo, V.3
Zare, R.N.4
-
40
-
-
85008349796
-
Recent advances in biological single-molecule applications of optical tweezers and fluorescence microscopy
-
Hashemi Shabestari, M., Meijering, A. E., Roos, W. H., Wuite, G. J., and Peterman, E. J. (2017). Recent advances in biological single-molecule applications of optical tweezers and fluorescence microscopy. Methods Enzymol. 582, 85-119. doi: 10.1016/bs.mie.2016.09.047
-
(2017)
Methods Enzymol.
, vol.582
, pp. 85-119
-
-
Hashemi Shabestari, M.1
Meijering, A.E.2
Roos, W.H.3
Wuite, G.J.4
Peterman, E.J.5
-
41
-
-
84964452502
-
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
-
Hashimshony, T., Senderovich, N., Avital, G., Klochendler, A., de Leeuw, Y., Anavy, L., et al. (2016). CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq. Genome Biol. 17, 77. doi: 10.1186/s13059-016-0938-8
-
(2016)
Genome Biol.
, vol.17
, pp. 77
-
-
Hashimshony, T.1
Senderovich, N.2
Avital, G.3
Klochendler, A.4
de Leeuw, Y.5
Anavy, L.6
-
42
-
-
84866953427
-
CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification
-
Hashimshony, T., Wagner, F., Sher, N., and Yanai, I. (2012). CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. Cell Rep. 2, 666-673. doi: 10.1016/j.celrep.2012.08.003
-
(2012)
Cell Rep.
, vol.2
, pp. 666-673
-
-
Hashimshony, T.1
Wagner, F.2
Sher, N.3
Yanai, I.4
-
43
-
-
84960098293
-
Improved lysis of single bacterial cells by a modified alkaline-thermal shock procedure
-
He, J., Du, S., Tan, X., Arefin, A., and Han, C. S. (2016). Improved lysis of single bacterial cells by a modified alkaline-thermal shock procedure. Biotechniques 60, 129-135. doi: 10.2144/000114389
-
(2016)
Biotechniques
, vol.60
, pp. 129-135
-
-
He, J.1
Du, S.2
Tan, X.3
Arefin, A.4
Han, C.S.5
-
44
-
-
84949561791
-
Efficient extraction of small and large RNAs in bacteria for excellent total RNA sequencing and comprehensive transcriptome analysis
-
Heera, R., Sivachandran, P., Chinni, S. V., Mason, J., Croft, L., Ravichandran, M., et al. (2015). Efficient extraction of small and large RNAs in bacteria for excellent total RNA sequencing and comprehensive transcriptome analysis. BMC Res. Notes 8:754. doi: 10.1186/s13104-015-1726-3
-
(2015)
BMC Res. Notes
, vol.8
, pp. 754
-
-
Heera, R.1
Sivachandran, P.2
Chinni, S.V.3
Mason, J.4
Croft, L.5
Ravichandran, M.6
-
45
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess, M., Sczyrba, A., Egan, R., Kim, T. W., Chokhawala, H., Schroth, G., et al. (2011). Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463-467. doi: 10.1126/science.1200387
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.W.4
Chokhawala, H.5
Schroth, G.6
-
46
-
-
85024126714
-
Massively parallel whole genome amplification for single-cell sequencing using droplet microfluidics
-
Hosokawa, M., Nishikawa, Y., Kogawa, M., and Takeyama, H. (2017). Massively parallel whole genome amplification for single-cell sequencing using droplet microfluidics. Sci. Rep. 7, 5199. doi: 10.1038/s41598-017-05436-4
-
(2017)
Sci. Rep.
, vol.7
, pp. 5199
-
-
Hosokawa, M.1
Nishikawa, Y.2
Kogawa, M.3
Takeyama, H.4
-
47
-
-
84979520403
-
Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing
-
Hou, Y., Wu, K., Shi, X., Li, F., Song, L., Wu, H., et al. (2015). Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing. Gigascience 4, 37. doi: 10.1186/s13742-015-0068-3
-
(2015)
Gigascience
, vol.4
, pp. 37
-
-
Hou, Y.1
Wu, K.2
Shi, X.3
Li, F.4
Song, L.5
Wu, H.6
-
48
-
-
0026687107
-
A new source of polymorphic DNA markers for sperm typing: analysis of microsatellite repeats in single cells
-
Hubert, R., Weber, J. L., Schmitt, K., Zhang, L., and Arnheim, N. (1992). A new source of polymorphic DNA markers for sperm typing: analysis of microsatellite repeats in single cells. Am. J. Hum. Genet. 51, 985-991.
-
(1992)
Am. J. Hum. Genet.
, vol.51
, pp. 985-991
-
-
Hubert, R.1
Weber, J.L.2
Schmitt, K.3
Zhang, L.4
Arnheim, N.5
-
49
-
-
79959403670
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
-
Islam, S., Kjallquist, U., Moliner, A., Zajac, P., Fan, J. B., Lonnerberg, P., et al. (2011). Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res. 21, 1160-1167. doi: 10.1101/gr.110882.110
-
(2011)
Genome Res.
, vol.21
, pp. 1160-1167
-
-
Islam, S.1
Kjallquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
Lonnerberg, P.6
-
50
-
-
84859621573
-
Highly multiplexed and strand-specific single-cell RNA 5' end sequencing
-
Islam, S., Kjallquist, U., Moliner, A., Zajac, P., Fan, J. B., Lonnerberg, P., et al. (2012). Highly multiplexed and strand-specific single-cell RNA 5' end sequencing. Nat. Protoc. 7, 813-828. doi: 10.1038/nprot.2012.022
-
(2012)
Nat. Protoc.
, vol.7
, pp. 813-828
-
-
Islam, S.1
Kjallquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
Lonnerberg, P.6
-
51
-
-
84893905629
-
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
-
Jaitin, D. A., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., et al. (2014). Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science 343, 776-779. doi: 10.1126/science.1247651
-
(2014)
Science
, vol.343
, pp. 776-779
-
-
Jaitin, D.A.1
Kenigsberg, E.2
Keren-Shaul, H.3
Elefant, N.4
Paul, F.5
Zaretsky, I.6
-
52
-
-
85010366301
-
MetaSort untangles metagenome assembly by reducing microbial community complexity
-
Ji, P., Zhang, Y., Wang, J., and Zhao, F. (2017). MetaSort untangles metagenome assembly by reducing microbial community complexity. Nat. Commun. 8:14306. doi: 10.1038/ncomms14306
-
(2017)
Nat. Commun
, vol.8
, pp. 14306
-
-
Ji, P.1
Zhang, Y.2
Wang, J.3
Zhao, F.4
-
53
-
-
84962210164
-
High throughput single-cell cultivation on microfluidic streak plates
-
Jiang, C. Y., Dong, L., Zhao, J. K., Hu, X., Shen, C., Qiao, Y., et al. (2016). High throughput single-cell cultivation on microfluidic streak plates. Appl. Environ. Microbiol. 82, 2210-2218. doi: 10.1128/AEM.03588-15
-
(2016)
Appl. Environ. Microbiol.
, vol.82
, pp. 2210-2218
-
-
Jiang, C.Y.1
Dong, L.2
Zhao, J.K.3
Hu, X.4
Shen, C.5
Qiao, Y.6
-
54
-
-
84933055069
-
Single prokaryotic cell isolation and total transcript amplification protocol for transcriptomic analysis
-
Kang, Y., McMillan, I., Norris, M. H., and Hoang, T. T. (2015). Single prokaryotic cell isolation and total transcript amplification protocol for transcriptomic analysis. Nat. Protoc. 10, 974-984. doi: 10.1038/nprot.2015.058
-
(2015)
Nat. Protoc.
, vol.10
, pp. 974-984
-
-
Kang, Y.1
McMillan, I.2
Norris, M.H.3
Hoang, T.T.4
-
55
-
-
79957938596
-
Transcript amplification from single bacterium for transcriptome analysis
-
Kang, Y., Norris, M. H., Zarzycki-Siek, J., Nierman, W. C., Donachie, S. P., and Hoang, T. T. (2011). Transcript amplification from single bacterium for transcriptome analysis. Genome Res. 21, 925-935. doi: 10.1101/gr.116103.110
-
(2011)
Genome Res.
, vol.21
, pp. 925-935
-
-
Kang, Y.1
Norris, M.H.2
Zarzycki-Siek, J.3
Nierman, W.C.4
Donachie, S.P.5
Hoang, T.T.6
-
56
-
-
84899559579
-
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
-
Kashtan, N., Roggensack, S. E., Rodrigue, S., Thompson, J. W., Biller, S. J., Coe, A., et al. (2014). Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science 344, 416-420. doi: 10.1126/science.1248575
-
(2014)
Science
, vol.344
, pp. 416-420
-
-
Kashtan, N.1
Roggensack, S.E.2
Rodrigue, S.3
Thompson, J.W.4
Biller, S.J.5
Coe, A.6
-
57
-
-
0345831993
-
Development of a single-tube, cell lysis-based, genus-specific PCR method for rapid identification of Mycobacteria: optimization of cell lysis, PCR primers and conditions, and restriction rattern analysis
-
Khan, I. U. H., and Yadav, J. S. (2004). Development of a single-tube, cell lysis-based, genus-specific PCR method for rapid identification of Mycobacteria: optimization of cell lysis, PCR primers and conditions, and restriction rattern analysis. J. Clin. Microbiol. 42, 453-457. doi: 10.1128/jcm.42.1.453-457.2004
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 453-457
-
-
Khan, I.U.H.1
Yadav, J.S.2
-
58
-
-
85010903349
-
High-throughput automated microfluidic sample preparation for accurate microbial genomics
-
Kim, S., De Jonghe, J., Kulesa, A. B., Feldman, D., Vatanen, T., Bhattacharyya, R. P., et al. (2017). High-throughput automated microfluidic sample preparation for accurate microbial genomics. Nat. Commun. 8:13919. doi: 10.1038/ncomms13919
-
(2017)
Nat. Commun
, vol.8
, pp. 13919
-
-
Kim, S.1
De Jonghe, J.2
Kulesa, A.B.3
Feldman, D.4
Vatanen, T.5
Bhattacharyya, R.P.6
-
59
-
-
84929684998
-
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells
-
Klein, A. M., Mazutis, L., Akartuna, I., Tallapragada, N., Veres, A., Li, V., et al. (2015). Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. Cell 161, 1187-1201. doi: 10.1016/j.cell.2015.04.044
-
(2015)
Cell
, vol.161
, pp. 1187-1201
-
-
Klein, A.M.1
Mazutis, L.2
Akartuna, I.3
Tallapragada, N.4
Veres, A.5
Li, V.6
-
60
-
-
0033551238
-
Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells
-
Klein, C. A., Schmidt-Kittler, O., Schardt, J. A., Pantel, K., Speicher, M. R., and Riethmuller, G. (1999). Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells. Proc. Natl. Acad. Sci. U.S.A. 96, 4494-4499. doi: 10.1073/pnas.96.8.4494
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 4494-4499
-
-
Klein, C.A.1
Schmidt-Kittler, O.2
Schardt, J.A.3
Pantel, K.4
Speicher, M.R.5
Riethmuller, G.6
-
61
-
-
84929687805
-
The technology and biology of single-cell RNA sequencing
-
Kolodziejczyk, A. A., Kim, J. K., Svensson, V., Marioni, J. C., and Teichmann, S. A. (2015). The technology and biology of single-cell RNA sequencing. Mol. Cell 58, 610-620. doi: 10.1016/j.molcel.2015.04.005
-
(2015)
Mol. Cell
, vol.58
, pp. 610-620
-
-
Kolodziejczyk, A.A.1
Kim, J.K.2
Svensson, V.3
Marioni, J.C.4
Teichmann, S.A.5
-
62
-
-
0028598147
-
Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitat
-
Korona, R., Nakatsu, C. H., Forney, L. J., and Lenski, R. E. (1994). Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitat. Proc. Natl. Acad. Sci. U.S.A. 91, 9037-9041. doi: 10.1073/pnas.91.19.9037
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 9037-9041
-
-
Korona, R.1
Nakatsu, C.H.2
Forney, L.J.3
Lenski, R.E.4
-
63
-
-
25444523728
-
Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications
-
Kurn, N., Chen, P., Heath, J. D., Kopf-Sill, A., Stephens, K. M., and Wang, S. (2005). Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications. Clin. Chem. 51, 1973-1981. doi: 10.1373/clinchem.2005.053694
-
(2005)
Clin. Chem.
, vol.51
, pp. 1973-1981
-
-
Kurn, N.1
Chen, P.2
Heath, J.D.3
Kopf-Sill, A.4
Stephens, K.M.5
Wang, S.6
-
64
-
-
85024409143
-
Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding
-
Lan, F., Demaree, B., Ahmed, N., and Abate, A. R. (2017). Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding. Nat. Biotechnol. 35, 640-646. doi: 10.1038/nbt.3880
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 640-646
-
-
Lan, F.1
Demaree, B.2
Ahmed, N.3
Abate, A.R.4
-
65
-
-
0036020666
-
Rubicon Genomics, Inc
-
Langmore, J. P. (2002). Rubicon Genomics, Inc. Pharmacogenomics 3, 557-560. doi: 10.1517/14622416.3.4.557
-
(2002)
Pharmacogenomics
, vol.3
, pp. 557-560
-
-
Langmore, J.P.1
-
66
-
-
84864394611
-
Genomic sequencing of uncultured microorganisms from single cells
-
Lasken, R. S. (2012). Genomic sequencing of uncultured microorganisms from single cells. Nat. Rev. Microbiol. 10, 631-640. doi: 10.1038/nrmicro2857
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 631-640
-
-
Lasken, R.S.1
-
67
-
-
0025224734
-
Painting of human chromosomes with probes generated from hybrid cell lines by PCR with Alu and L1 primers
-
Lengauer, C., Riethman, H., and Cremer, T. (1990). Painting of human chromosomes with probes generated from hybrid cell lines by PCR with Alu and L1 primers. Hum. Genet. 86, 1-6. doi: 10.1007/BF00205163
-
(1990)
Hum. Genet.
, vol.86
, pp. 1-6
-
-
Lengauer, C.1
Riethman, H.2
Cremer, T.3
-
68
-
-
84979547050
-
Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates
-
Leung, K., Klaus, A., Lin, B. K., Laks, E., Biele, J., Lai, D., et al. (2016). Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates. Proc. Natl. Acad. Sci. U.S.A. 113, 8484-8489. doi: 10.1073/pnas.1520964113
-
(2016)
Proc. Natl. Acad. Sci. U.S.A.
, vol.113
, pp. 8484-8489
-
-
Leung, K.1
Klaus, A.2
Lin, B.K.3
Laks, E.4
Biele, J.5
Lai, D.6
-
69
-
-
0025094268
-
Fluorescence in situ hybridization with Alu and L1 polymerase chain reaction probes for rapid characterization of human chromosomes in hybrid cell lines
-
Lichter, P., Ledbetter, S. A., Ledbetter, D. H., and Ward, D. C. (1990). Fluorescence in situ hybridization with Alu and L1 polymerase chain reaction probes for rapid characterization of human chromosomes in hybrid cell lines. Proc. Natl. Acad. Sci. U.S.A. 87, 6634-6638. doi: 10.1073/pnas.87.17.6634
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 6634-6638
-
-
Lichter, P.1
Ledbetter, S.A.2
Ledbetter, D.H.3
Ward, D.C.4
-
71
-
-
84922937832
-
A new antibiotic kills pathogens without detectable resistance
-
Ling, L. L., Schneider, T., Peoples, A. J., Spoering, A. L., Engels, I., Conlon, B. P., et al. (2015). A new antibiotic kills pathogens without detectable resistance. Nature 517, 455-459. doi: 10.1038/nature14098
-
(2015)
Nature
, vol.517
, pp. 455-459
-
-
Ling, L.L.1
Schneider, T.2
Peoples, A.J.3
Spoering, A.L.4
Engels, I.5
Conlon, B.P.6
-
72
-
-
84871447495
-
Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing
-
Lu, S., Zong, C., Fan, W., Yang, M., Li, J., Chapman, A. R., et al. (2012). Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing. Science 338, 1627-1630. doi: 10.1126/science.1229112
-
(2012)
Science
, vol.338
, pp. 1627-1630
-
-
Lu, S.1
Zong, C.2
Fan, W.3
Yang, M.4
Li, J.5
Chapman, A.R.6
-
73
-
-
84929684999
-
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
-
Macosko, E. Z., Basu, A., Satija, R., Nemesh, J., Shekhar, K., Goldman, M., et al. (2015). Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161, 1202-1214. doi: 10.1016/j.cell.2015.05.002
-
(2015)
Cell
, vol.161
, pp. 1202-1214
-
-
Macosko, E.Z.1
Basu, A.2
Satija, R.3
Nemesh, J.4
Shekhar, K.5
Goldman, M.6
-
74
-
-
34848895943
-
Nanoliter reactors improve multiple displacement amplification of genomes from single cells
-
Marcy, Y., Ishoey, T., Lasken, R. S., Stockwell, T. B., Walenz, B. P., Halpern, A. L., et al. (2007a). Nanoliter reactors improve multiple displacement amplification of genomes from single cells. PLOS Genet. 3:1702-1708. doi: 10.1371/journal.pgen.0030155
-
(2007)
PLOS Genet.
, vol.3
, pp. 1702-1708
-
-
Marcy, Y.1
Ishoey, T.2
Lasken, R.S.3
Stockwell, T.B.4
Walenz, B.P.5
Halpern, A.L.6
-
75
-
-
34547540925
-
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
-
Marcy, Y., Ouverney, C., Bik, E. M., Losekann, T., Ivanova, N., Martin, H. G., et al. (2007b). Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc. Natl. Acad. Sci. U.S.A. 104, 11889-11894. doi: 10.1073/pnas.0704662104
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 11889-11894
-
-
Marcy, Y.1
Ouverney, C.2
Bik, E.M.3
Losekann, T.4
Ivanova, N.5
Martin, H.G.6
-
76
-
-
85013293311
-
Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry
-
Marie, D., Le Gall, F., Edern, R., Gourvil, P., and Vaulot, D. (2017). Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry. J. Phycol. 53, 271-282. doi: 10.1111/jpy.12495
-
(2017)
J. Phycol.
, vol.53
, pp. 271-282
-
-
Marie, D.1
Le Gall, F.2
Edern, R.3
Gourvil, P.4
Vaulot, D.5
-
77
-
-
84871013824
-
A single-cell genome for Thiovulum sp
-
Marshall, I. P., Blainey, P. C., Spormann, A. M., and Quake, S. R. (2012). A single-cell genome for Thiovulum sp. Appl. Environ. Microbiol. 78, 8555-8563. doi: 10.1128/AEM.02314-12
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 8555-8563
-
-
Marshall, I.P.1
Blainey, P.C.2
Spormann, A.M.3
Quake, S.R.4
-
78
-
-
84860008730
-
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia
-
Martinez-Garcia, M., Brazel, D. M., Swan, B. K., Arnosti, C., Chain, P. S., Reitenga, K. G., et al. (2012a). Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia. PLOS ONE 7:e35314. doi: 10.1371/journal.pone.0035314
-
(2012)
PLOS ONE
, vol.7
-
-
Martinez-Garcia, M.1
Brazel, D.M.2
Swan, B.K.3
Arnosti, C.4
Chain, P.S.5
Reitenga, K.G.6
-
79
-
-
84355163060
-
High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
-
Martinez-Garcia, M., Swan, B. K., Poulton, N. J., Gomez, M. L., Masland, D., Sieracki, M. E., et al. (2012b). High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J. 6, 113-123. doi: 10.1038/ismej.2011.84
-
(2012)
ISME J.
, vol.6
, pp. 113-123
-
-
Martinez-Garcia, M.1
Swan, B.K.2
Poulton, N.J.3
Gomez, M.L.4
Masland, D.5
Sieracki, M.E.6
-
80
-
-
84865318505
-
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
-
Mason, O. U., Hazen, T. C., Borglin, S., Chain, P. S., Dubinsky, E. A., Fortney, J. L., et al. (2012). Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J. 6, 1715-1727. doi: 10.1038/ismej.2012.59
-
(2012)
ISME J.
, vol.6
, pp. 1715-1727
-
-
Mason, O.U.1
Hazen, T.C.2
Borglin, S.3
Chain, P.S.4
Dubinsky, E.A.5
Fortney, J.L.6
-
81
-
-
84903393770
-
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
-
Mason, O. U., Scott, N. M., Gonzalez, A., Robbins-Pianka, A., Baelum, J., Kimbrel, J., et al. (2014). Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J. 8, 1464-1475. doi: 10.1038/ismej.2013.254
-
(2014)
ISME J.
, vol.8
, pp. 1464-1475
-
-
Mason, O.U.1
Scott, N.M.2
Gonzalez, A.3
Robbins-Pianka, A.4
Baelum, J.5
Kimbrel, J.6
-
82
-
-
84899407728
-
Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles
-
Massana, R., del Campo, J., Sieracki, M. E., Audic, S., and Logares, R. (2014). Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles. ISME J. 8, 854-866. doi: 10.1038/ismej.2013.204
-
(2014)
ISME J.
, vol.8
, pp. 854-866
-
-
Massana, R.1
del Campo, J.2
Sieracki, M.E.3
Audic, S.4
Logares, R.5
-
83
-
-
66749155362
-
FluidFM: combining atomic force microscopy and nanofluidics in a universal liquid delivery system for single cell applications and beyond
-
Meister, A., Gabi, M., Behr, P., Studer, P., Voros, J., Niedermann, P., et al. (2009). FluidFM: combining atomic force microscopy and nanofluidics in a universal liquid delivery system for single cell applications and beyond. Nano Lett. 9, 2501-2507. doi: 10.1021/nl901384x
-
(2009)
Nano Lett.
, vol.9
, pp. 2501-2507
-
-
Meister, A.1
Gabi, M.2
Behr, P.3
Studer, P.4
Voros, J.5
Niedermann, P.6
-
84
-
-
84894363922
-
Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
-
Meng, J., Xu, J., Qin, D., He, Y., Xiao, X., and Wang, F. (2014). Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses. ISME J. 8, 650-659. doi: 10.1038/ismej.2013.174
-
(2014)
ISME J.
, vol.8
, pp. 650-659
-
-
Meng, J.1
Xu, J.2
Qin, D.3
He, Y.4
Xiao, X.5
Wang, F.6
-
85
-
-
77954296747
-
Microfluidic device for transport and observation of single cells
-
ASME 2009 International Mechanical Engineering Congress and Exposition, New York City, NY.
-
Merza, S. A., Posner, J. D., Anis, Y. H., Young, A. C., Johnson, R. H., and Meldrum, D. R. (2009). "Microfluidic device for transport and observation of single cells," in ASME 2009 International Mechanical Engineering Congress and Exposition, New York City, NY. doi: 10.1115/IMECE2009-13019
-
(2009)
-
-
Merza, S.A.1
Posner, J.D.2
Anis, Y.H.3
Young, A.C.4
Johnson, R.H.5
Meldrum, D.R.6
-
86
-
-
44449136151
-
Recent advances in optical tweezers
-
Moffitt, J. R., Chemla, Y. R., Smith, S. B., and Bustamante, C. (2008). Recent advances in optical tweezers. Annu. Rev. Biochem. 77, 205-228. doi: 10.1146/annurev.biochem.77.043007.090225
-
(2008)
Annu. Rev. Biochem.
, vol.77
, pp. 205-228
-
-
Moffitt, J.R.1
Chemla, Y.R.2
Smith, S.B.3
Bustamante, C.4
-
87
-
-
80355127997
-
Transcriptome analysis of single cells
-
Morris, J., Singh, J. M., and Eberwine, J. H. (2011). Transcriptome analysis of single cells. J. Vis. Exp. 2011:e2634. doi: 10.3791/2634
-
(2011)
J. Vis. Exp
, vol.2011
-
-
Morris, J.1
Singh, J.M.2
Eberwine, J.H.3
-
88
-
-
0032707613
-
Characterization of photodamage to Escherichia coli in optical traps
-
Neuman, K. C., Chadd, E. H., Liou, G. F., Bergman, K., and Block, S. M. (1999). Characterization of photodamage to Escherichia coli in optical traps. Biophys. J. 77, 2856-2863. doi: 10.1016/S0006-3495(99)77117-1
-
(1999)
Biophys. J.
, vol.77
, pp. 2856-2863
-
-
Neuman, K.C.1
Chadd, E.H.2
Liou, G.F.3
Bergman, K.4
Block, S.M.5
-
89
-
-
84934980871
-
Quantitative assessment of single-cell whole genome amplification methods for detecting copy number variation using hippocampal neurons
-
Ning, L., Li, Z., Wang, G., Hu, W., Hou, Q., Tong, Y., et al. (2015). Quantitative assessment of single-cell whole genome amplification methods for detecting copy number variation using hippocampal neurons. Sci. Rep. 5:11415. doi: 10.1038/srep11415
-
(2015)
Sci. Rep
, vol.5
, pp. 11415
-
-
Ning, L.1
Li, Z.2
Wang, G.3
Hu, W.4
Hou, Q.5
Tong, Y.6
-
90
-
-
63149160427
-
Host cell-free growth of the Q fever bacterium Coxiella burnetii
-
Omsland, A., Cockrell, D. C., Howe, D., Fischer, E. R., Virtaneva, K., Sturdevant, D. E., et al. (2009). Host cell-free growth of the Q fever bacterium Coxiella burnetii. Proc. Natl. Acad. Sci. U.S.A. 106, 4430-4434. doi: 10.1073/pnas.0812074106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 4430-4434
-
-
Omsland, A.1
Cockrell, D.C.2
Howe, D.3
Fischer, E.R.4
Virtaneva, K.5
Sturdevant, D.E.6
-
91
-
-
33845342557
-
Microfluidic digital PCR enables multigene analysis of individual environmental bacteria
-
Ottesen, E. A., Hong, J. W., Quake, S. R., and Leadbetter, J. R. (2006). Microfluidic digital PCR enables multigene analysis of individual environmental bacteria. Science 314, 1464-1467. doi: 10.1126/science.1131370
-
(2006)
Science
, vol.314
, pp. 1464-1467
-
-
Ottesen, E.A.1
Hong, J.W.2
Quake, S.R.3
Leadbetter, J.R.4
-
92
-
-
84857727947
-
Single-molecule direct RNA sequencing without cDNA synthesis
-
Ozsolak, F., and Milos, P. M. (2011). Single-molecule direct RNA sequencing without cDNA synthesis. Wiley Interdiscip. Rev. RNA 2, 565-570. doi: 10.1002/wrna.84
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 565-570
-
-
Ozsolak, F.1
Milos, P.M.2
-
93
-
-
70349956497
-
Direct RNA sequencing
-
Ozsolak, F., Platt, A. R., Jones, D. R., Reifenberger, J. G., Sass, L. E., McInerney, P., et al. (2009). Direct RNA sequencing. Nature 461, 814-818. doi: 10.1038/nature08390
-
(2009)
Nature
, vol.461
, pp. 814-818
-
-
Ozsolak, F.1
Platt, A.R.2
Jones, D.R.3
Reifenberger, J.G.4
Sass, L.E.5
McInerney, P.6
-
94
-
-
84861895026
-
Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)
-
Pamp, S. J., Harrington, E. D., Quake, S. R., Relman, D. A., and Blainey, P. C. (2012). Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). Genome Res. 22, 1107-1119. doi: 10.1101/gr.131482.111
-
(2012)
Genome Res.
, vol.22
, pp. 1107-1119
-
-
Pamp, S.J.1
Harrington, E.D.2
Quake, S.R.3
Relman, D.A.4
Blainey, P.C.5
-
95
-
-
84978951918
-
Single-cell RNA-sequencing: the future of genome biology is now
-
Picelli, S. (2016). Single-cell RNA-sequencing: the future of genome biology is now. RNA Biol. 14, 637-650. doi: 10.1080/15476286.2016.1201618
-
(2016)
RNA Biol.
, vol.14
, pp. 637-650
-
-
Picelli, S.1
-
96
-
-
84887101406
-
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
-
Picelli, S., Bjorklund, A. K., Faridani, O. R., Sagasser, S., Winberg, G., and Sandberg, R. (2013). Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nat. Methods 10, 1096-1098. doi: 10.1038/nmeth.2639
-
(2013)
Nat. Methods
, vol.10
, pp. 1096-1098
-
-
Picelli, S.1
Bjorklund, A.K.2
Faridani, O.R.3
Sagasser, S.4
Winberg, G.5
Sandberg, R.6
-
97
-
-
84891677425
-
Full-length RNA-seq from single cells using Smart-seq2
-
Picelli, S., Faridani, O. R., Bjorklund, A. K., Winberg, G., Sagasser, S., and Sandberg, R. (2014). Full-length RNA-seq from single cells using Smart-seq2. Nat. Protoc. 9, 171-181. doi: 10.1038/nprot.2014.006
-
(2014)
Nat. Protoc.
, vol.9
, pp. 171-181
-
-
Picelli, S.1
Faridani, O.R.2
Bjorklund, A.K.3
Winberg, G.4
Sagasser, S.5
Sandberg, R.6
-
98
-
-
84999808918
-
TruePrime is a novel method for whole-genome amplification from single cells based on TthPrimPol
-
Picher, A. J., Budeus, B., Wafzig, O., Kruger, C., Garcia-Gomez, S., Martinez-Jimenez, M. I., et al. (2016). TruePrime is a novel method for whole-genome amplification from single cells based on TthPrimPol. Nat. Commun. 7:13296. doi: 10.1038/ncomms13296
-
(2016)
Nat. Commun
, vol.7
, pp. 13296
-
-
Picher, A.J.1
Budeus, B.2
Wafzig, O.3
Kruger, C.4
Garcia-Gomez, S.5
Martinez-Jimenez, M.I.6
-
99
-
-
85017139529
-
Scaling by shrinking: empowering single-cell 'omics' with microfluidic devices
-
Prakadan, S. M., Shalek, A. K., and Weitz, D. A. (2017). Scaling by shrinking: empowering single-cell 'omics' with microfluidic devices. Nat. Rev. Genet. 18, 345-361. doi: 10.1038/nrg.2017.15
-
(2017)
Nat. Rev. Genet.
, vol.18
, pp. 345-361
-
-
Prakadan, S.M.1
Shalek, A.K.2
Weitz, D.A.3
-
100
-
-
84948472074
-
Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri
-
Qi, Z., Pei, G., Chen, L., and Zhang, W. (2014). Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri. Sci. Rep. 4:7478. doi: 10.1038/srep07478
-
(2014)
Sci. Rep
, vol.4
, pp. 7478
-
-
Qi, Z.1
Pei, G.2
Chen, L.3
Zhang, W.4
-
101
-
-
84966359155
-
Comparison of transcriptional heterogeneity of eight genes between batch Desulfovibrio vulgaris biofilm and planktonic culture at a single-cell level
-
Qi, Z. H., Chen, L., and Zhang, W. W. (2016). Comparison of transcriptional heterogeneity of eight genes between batch Desulfovibrio vulgaris biofilm and planktonic culture at a single-cell level. Front. Microbiol. 7:597. doi: 10.3389/fmicb.2016.00597
-
(2016)
Front. Microbiol
, vol.7
, pp. 597
-
-
Qi, Z.H.1
Chen, L.2
Zhang, W.W.3
-
102
-
-
20444418081
-
Genomic DNA amplification from a single bacterium
-
Raghunathan, A., Ferguson, H. R. Jr., Bornarth, C. J., Song, W., Driscoll, M., and Lasken, R. S. (2005). Genomic DNA amplification from a single bacterium. Appl. Environ. Microbiol. 71, 3342-3347. doi: 10.1128/AEM.71.6.3342-3347.2005
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3342-3347
-
-
Raghunathan, A.1
Ferguson, H.R.Jr.2
Bornarth, C.J.3
Song, W.4
Driscoll, M.5
Lasken, R.S.6
-
103
-
-
0032474853
-
Adaptive radiation in a heterogeneous environment
-
Rainey, P. B., and Travisano, M. (1998). Adaptive radiation in a heterogeneous environment. Nature 394, 69-72. doi: 10.1038/27900
-
(1998)
Nature
, vol.394
, pp. 69-72
-
-
Rainey, P.B.1
Travisano, M.2
-
104
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N. N., Anderson, I. J., Cheng, J. F., et al. (2013). Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-437. doi: 10.1038/nature12352
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.F.6
-
105
-
-
84953243740
-
Gene expression variability in clonal populations: causes and consequences
-
Roberfroid, S., Vanderleyden, J., and Steenackers, H. (2016). Gene expression variability in clonal populations: causes and consequences. Crit. Rev. Microbiol. 42, 969-984. doi: 10.3109/1040841X.2015.1122571
-
(2016)
Crit. Rev. Microbiol.
, vol.42
, pp. 969-984
-
-
Roberfroid, S.1
Vanderleyden, J.2
Steenackers, H.3
-
106
-
-
84906228597
-
Single-cell RNA-seq: advances and future challenges
-
Saliba, A. E., Westermann, A. J., Gorski, S. A., and Vogel, J. (2014). Single-cell RNA-seq: advances and future challenges. Nucleic Acids Res. 42, 8845-8860. doi: 10.1093/nar/gku555
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 8845-8860
-
-
Saliba, A.E.1
Westermann, A.J.2
Gorski, S.A.3
Vogel, J.4
-
107
-
-
84876085773
-
Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity
-
Sasagawa, Y., Nikaido, I., Hayashi, T., Danno, H., Uno, K. D., Imai, T., et al. (2013). Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. Genome Biol. 14:R31. doi: 10.1186/gb-2013-14-4-r31
-
(2013)
Genome Biol
, vol.14
, pp. R31
-
-
Sasagawa, Y.1
Nikaido, I.2
Hayashi, T.3
Danno, H.4
Uno, K.D.5
Imai, T.6
-
108
-
-
85015303302
-
Abseq: ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding
-
Shahi, P., Kim, S. C., Haliburton, J. R., Gartner, Z. J., and Abate, A. R. (2017). Abseq: ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding. Sci. Rep. 7:44447. doi: 10.1038/srep44447
-
(2017)
Sci. Rep
, vol.7
, pp. 44447
-
-
Shahi, P.1
Kim, S.C.2
Haliburton, J.R.3
Gartner, Z.J.4
Abate, A.R.5
-
109
-
-
84874806641
-
Monitoring the single-cell stress response of the diatom Thalassiosira pseudonana by quantitative real-time reverse transcription-PCR
-
Shi, X., Gao, W., Chao, S. H., Zhang, W., and Meldrum, D. R. (2013). Monitoring the single-cell stress response of the diatom Thalassiosira pseudonana by quantitative real-time reverse transcription-PCR. Appl. Environ. Microbiol. 79, 1850-1858. doi: 10.1128/AEM.03399-12
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 1850-1858
-
-
Shi, X.1
Gao, W.2
Chao, S.H.3
Zhang, W.4
Meldrum, D.R.5
-
110
-
-
78650591665
-
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges
-
Siegl, A., Kamke, J., Hochmuth, T., Piel, J., Richter, M., Liang, C., et al. (2011). Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J. 5, 61-70. doi: 10.1038/ismej.2010.95
-
(2011)
ISME J.
, vol.5
, pp. 61-70
-
-
Siegl, A.1
Kamke, J.2
Hochmuth, T.3
Piel, J.4
Richter, M.5
Liang, C.6
-
111
-
-
84991492398
-
Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea
-
Song, Y., Kaster, A. K., Vollmers, J., Song, Y., Davison, P. A., Frentrup, M., et al. (2017). Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea. Microb. Biotechnol. 10, 125-137. doi: 10.1111/1751-7915.12420
-
(2017)
Microb. Biotechnol.
, vol.10
, pp. 125-137
-
-
Song, Y.1
Kaster, A.K.2
Vollmers, J.3
Song, Y.4
Davison, P.A.5
Frentrup, M.6
-
112
-
-
84963632389
-
Raman activated cell sorting
-
Song, Y., Yin, H., and Huang, W. E. (2016). Raman activated cell sorting. Curr. Opin. Chem. Biol. 33, 1-8. doi: 10.1016/j.cbpa.2016.04.002
-
(2016)
Curr. Opin. Chem. Biol.
, vol.33
, pp. 1-8
-
-
Song, Y.1
Yin, H.2
Huang, W.E.3
-
113
-
-
84929206404
-
-
bioRxiv.
-
Soumillon, M., Cacchiarelli, D., Semrau, S., van Oudenaarden, A., and Mikkelsen, T. S. (2014). Characterization of directed differentiation by high-throughput single-cell RNA-Seq. bioRxiv. doi: 10.1101/003236
-
(2014)
Characterization of directed differentiation by high-throughput single-cell RNA-Seq
-
-
Soumillon, M.1
Cacchiarelli, D.2
Semrau, S.3
van Oudenaarden, A.4
Mikkelsen, T.S.5
-
114
-
-
84868098266
-
Single cell genomics: an individual look at microbes
-
Stepanauskas, R. (2012). Single cell genomics: an individual look at microbes. Curr. Opin. Microbiol. 15, 613-620. doi: 10.1016/j.mib.2012.09.001
-
(2012)
Curr. Opin. Microbiol.
, vol.15
, pp. 613-620
-
-
Stepanauskas, R.1
-
115
-
-
34547492897
-
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time
-
Stepanauskas, R., and Sieracki, M. E. (2007). Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time. Proc. Natl. Acad. Sci. U.S.A. 104, 9052-9057. doi: 10.1073/pnas.0700496104
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 9052-9057
-
-
Stepanauskas, R.1
Sieracki, M.E.2
-
116
-
-
84866332775
-
Growing unculturable bacteria
-
Stewart, E. J. (2012). Growing unculturable bacteria. J. Bacteriol. 194, 4151-4160. doi: 10.1128/JB.00345-12
-
(2012)
J. Bacteriol.
, vol.194
, pp. 4151-4160
-
-
Stewart, E.J.1
-
117
-
-
80052479893
-
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
-
Swan, B. K., Martinez-Garcia, M., Preston, C. M., Sczyrba, A., Woyke, T., Lamy, D., et al. (2011). Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333, 1296-1300. doi: 10.1126/science.1203690
-
(2011)
Science
, vol.333
, pp. 1296-1300
-
-
Swan, B.K.1
Martinez-Garcia, M.2
Preston, C.M.3
Sczyrba, A.4
Woyke, T.5
Lamy, D.6
-
118
-
-
77749323185
-
RNA-Seq analysis to capture the transcriptome landscape of a single cell
-
Tang, F., Barbacioru, C., Nordman, E., Li, B., Xu, N., Bashkirov, V. I., et al. (2010). RNA-Seq analysis to capture the transcriptome landscape of a single cell. Nat. Protoc. 5, 516-535. doi: 10.1038/nprot.2009.236
-
(2010)
Nat. Protoc.
, vol.5
, pp. 516-535
-
-
Tang, F.1
Barbacioru, C.2
Nordman, E.3
Li, B.4
Xu, N.5
Bashkirov, V.I.6
-
119
-
-
67349146589
-
mRNA-Seq whole-transcriptome analysis of a single cell
-
Tang, F., Barbacioru, C., Wang, Y., Nordman, E., Lee, C., Xu, N., et al. (2009). mRNA-Seq whole-transcriptome analysis of a single cell. Nat. Methods 6, 377-382. doi: 10.1038/nmeth.1315
-
(2009)
Nat. Methods
, vol.6
, pp. 377-382
-
-
Tang, F.1
Barbacioru, C.2
Wang, Y.3
Nordman, E.4
Lee, C.5
Xu, N.6
-
120
-
-
77955102352
-
Quantifying E
-
Taniguchi, Y., Choi, P. J., Li, G. W., Chen, H., Babu, M., Hearn, J., et al. (2010). Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329, 533-538. doi: 10.1126/science.1188308
-
(2010)
coli proteome and transcriptome with single-molecule sensitivity in single cells. Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
Hearn, J.6
-
121
-
-
0026736251
-
Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer
-
Telenius, H., Carter, N. P., Bebb, C. E., Nordenskjold, M., Ponder, B. A., and Tunnacliffe, A. (1992). Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13, 718-725. doi: 10.1016/0888-7543(92)90147-K
-
(1992)
Genomics
, vol.13
, pp. 718-725
-
-
Telenius, H.1
Carter, N.P.2
Bebb, C.E.3
Nordenskjold, M.4
Ponder, B.A.5
Tunnacliffe, A.6
-
122
-
-
85019720806
-
Robustness of a model microbial community emerges from population structure among single cells of a clonal population
-
Thompson, A. W., Turkarslan, S., Arens, C. E., Lopez Garcia de Lomana, A., Raman, A. V., Stahl, D. A., et al. (2017). Robustness of a model microbial community emerges from population structure among single cells of a clonal population. Environ. Microbiol. 19, 3059-3069. doi: 10.1111/1462-2920.13764
-
(2017)
Environ. Microbiol.
, vol.19
, pp. 3059-3069
-
-
Thompson, A.W.1
Turkarslan, S.2
Arens, C.E.3
Lopez Garcia de Lomana, A.4
Raman, A.V.5
Stahl, D.A.6
-
123
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe, S. G., von Mering, C., Kobayashi, A., Salamov, A. A., Chen, K., Chang, H. W., et al. (2005). Comparative metagenomics of microbial communities. Science 308, 554-557. doi: 10.1126/science.1107851
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
-
124
-
-
0026722421
-
Ligation-anchored PCR: a simple amplification technique with single-sided specificity
-
Troutt, A. B., McHeyzer-Williams, M. G., Pulendran, B., and Nossal, G. J. (1992). Ligation-anchored PCR: a simple amplification technique with single-sided specificity. Proc. Natl. Acad. Sci. U.S.A. 89, 9823-9825. doi: 10.1073/pnas.89.20.9823
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 9823-9825
-
-
Troutt, A.B.1
McHeyzer-Williams, M.G.2
Pulendran, B.3
Nossal, G.J.4
-
125
-
-
85016245951
-
Mechanism for microbial population collapse in a fluctuating resource environment
-
Turkarslan, S., Raman, A. V., Thompson, A. W., Arens, C. E., Gillespie, M. A., von Netzer, F., et al. (2017). Mechanism for microbial population collapse in a fluctuating resource environment. Mol. Syst. Biol. 13, 919. doi: 10.15252/msb.20167058
-
(2017)
Mol. Syst. Biol.
, vol.13
, pp. 919
-
-
Turkarslan, S.1
Raman, A.V.2
Thompson, A.W.3
Arens, C.E.4
Gillespie, M.A.5
von Netzer, F.6
-
126
-
-
84959061360
-
Division of labor in biofilms: the ecology of cell differentiation
-
van Gestel, J., Vlamakis, H., and Kolter, R. (2015). Division of labor in biofilms: the ecology of cell differentiation. Microbiol. Spectr. 3:MB-0002-2014. doi: 10.1128/microbiolspec.MB-0002-2014
-
(2015)
Microbiol. Spectr
, vol.3
-
-
van Gestel, J.1
Vlamakis, H.2
Kolter, R.3
-
127
-
-
84999133742
-
Survey of the green picoalga Bathycoccus genomes in the global ocean
-
Vannier, T., Leconte, J., Seeleuthner, Y., Mondy, S., Pelletier, E., Aury, J. M., et al. (2016). Survey of the green picoalga Bathycoccus genomes in the global ocean. Sci. Rep. 6:37900. doi: 10.1038/srep37900
-
(2016)
Sci. Rep
, vol.6
, pp. 37900
-
-
Vannier, T.1
Leconte, J.2
Seeleuthner, Y.3
Mondy, S.4
Pelletier, E.5
Aury, J.M.6
-
128
-
-
53849146767
-
Bistability, epigenetics, and bet-hedging in bacteria
-
Veening, J. W., Smits, W. K., and Kuipers, O. P. (2008). Bistability, epigenetics, and bet-hedging in bacteria. Annu. Rev. Microbiol. 62, 193-210. doi: 10.1146/annurev.micro.62.081307.163002
-
(2008)
Annu. Rev. Microbiol.
, vol.62
, pp. 193-210
-
-
Veening, J.W.1
Smits, W.K.2
Kuipers, O.P.3
-
129
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., et al. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. Science 304, 66-74. doi: 10.1126/science.1093857
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
-
130
-
-
84896059789
-
Adaptive noise
-
Viney, M., and Reece, S. E. (2013). Adaptive noise. Proc. Biol. Sci. 280:20131104. doi: 10.1098/rspb.2013.1104
-
(2013)
Proc. Biol. Sci
, vol.280
, pp. 20131104
-
-
Viney, M.1
Reece, S.E.2
-
131
-
-
84987644167
-
RNA-seq based transcriptomic analysis of single bacterial cells
-
Wang, J., Chen, L., Chen, Z., and Zhang, W. (2015). RNA-seq based transcriptomic analysis of single bacterial cells. Integr. Biol. (Camb) 7, 1466-1476. doi: 10.1039/c5ib00191a
-
(2015)
Integr. Biol. (Camb)
, vol.7
, pp. 1466-1476
-
-
Wang, J.1
Chen, L.2
Chen, Z.3
Zhang, W.4
-
132
-
-
84979300860
-
Development of droplet microfluidics enabling high-throughput single-cell analysis
-
Wen, N., Zhao, Z., Fan, B., Chen, D., Men, D., Wang, J., et al. (2016). Development of droplet microfluidics enabling high-throughput single-cell analysis. Molecules 21:881. doi: 10.3390/molecules21070881
-
(2016)
Molecules
, vol.21
, pp. 881
-
-
Wen, N.1
Zhao, Z.2
Fan, B.3
Chen, D.4
Men, D.5
Wang, J.6
-
133
-
-
1242346127
-
Integrating advanced functionality in a microfabricated high-throughput fluorescent-activated cell sorter
-
Wolff, A., Perch-Nielsen, I. R., Larsen, U. D., Friis, P., Goranovic, G., Poulsen, C. R., et al. (2003). Integrating advanced functionality in a microfabricated high-throughput fluorescent-activated cell sorter. Lab Chip 3, 22-27. doi: 10.1039/b209333b
-
(2003)
Lab Chip
, vol.3
, pp. 22-27
-
-
Wolff, A.1
Perch-Nielsen, I.R.2
Larsen, U.D.3
Friis, P.4
Goranovic, G.5
Poulsen, C.R.6
-
134
-
-
80054791084
-
Decontamination of MDA reagents for single cell whole genome amplification
-
Woyke, T., Sczyrba, A., Lee, J., Rinke, C., Tighe, D., Clingenpeel, S., et al. (2011). Decontamination of MDA reagents for single cell whole genome amplification. PLOS ONE 6:e26161. doi: 10.1371/journal.pone.0026161
-
(2011)
PLOS ONE
, vol.6
-
-
Woyke, T.1
Sczyrba, A.2
Lee, J.3
Rinke, C.4
Tighe, D.5
Clingenpeel, S.6
-
135
-
-
65449134335
-
Assembling the marine metagenome, one cell at a time
-
Woyke, T., Xie, G., Copeland, A., Gonzalez, J. M., Han, C., Kiss, H., et al. (2009). Assembling the marine metagenome, one cell at a time. PLOS ONE 4:e5299. doi: 10.1371/journal.pone.0005299
-
(2009)
PLOS ONE
, vol.4
-
-
Woyke, T.1
Xie, G.2
Copeland, A.3
Gonzalez, J.M.4
Han, C.5
Kiss, H.6
-
136
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
Wu, D., Hugenholtz, P., Mavromatis, K., Pukall, R., Dalin, E., Ivanova, N. N., et al. (2009). A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462, 1056-1060. doi: 10.1038/nature08656
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.N.6
-
137
-
-
85014405932
-
Active droplet sorting in microfluidics: a review
-
Xi, H. D., Zheng, H., Guo, W., Ganan-Calvo, A. M., Ai, Y., Tsao, C. W., et al. (2017). Active droplet sorting in microfluidics: a review. Lab Chip 17, 751-771. doi: 10.1039/c6lc01435f
-
(2017)
Lab Chip
, vol.17
, pp. 751-771
-
-
Xi, H.D.1
Zheng, H.2
Guo, W.3
Ganan-Calvo, A.M.4
Ai, Y.5
Tsao, C.W.6
-
138
-
-
79955787125
-
Single-cell genomics reveals organismal interactions in uncultivated marine protists
-
Yoon, H. S., Price, D. C., Stepanauskas, R., Rajah, V. D., Sieracki, M. E., Wilson, W. H., et al. (2011). Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science 332, 714-717. doi: 10.1126/science.1203163
-
(2011)
Science
, vol.332
, pp. 714-717
-
-
Yoon, H.S.1
Price, D.C.2
Stepanauskas, R.3
Rajah, V.D.4
Sieracki, M.E.5
Wilson, W.H.6
-
139
-
-
85012910965
-
Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing
-
Yu, F. B., Willis, L., Chau, R. M., Zambon, A., Horowitz, M., Bhaya, D., et al. (2017). Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing. BMC Biol. 15:11. doi: 10.1186/s12915-016-0344-4
-
(2017)
BMC Biol
, vol.15
, pp. 11
-
-
Yu, F.B.1
Willis, L.2
Chau, R.M.3
Zambon, A.4
Horowitz, M.5
Bhaya, D.6
-
140
-
-
0034933270
-
Ramification amplification: a novel isothermal DNA amplification method
-
Zhang, D. Y., Brandwein, M., Hsuih, T., and Li, H. B. (2001). Ramification amplification: a novel isothermal DNA amplification method. Mol. Diagn. 6, 141-150. doi: 10.1054/modi.2001.25323
-
(2001)
Mol. Diagn.
, vol.6
, pp. 141-150
-
-
Zhang, D.Y.1
Brandwein, M.2
Hsuih, T.3
Li, H.B.4
-
141
-
-
33745085561
-
Sequencing genomes from single cells by polymerase cloning
-
Zhang, K., Martiny, A. C., Reppas, N. B., Barry, K. W., Malek, J., Chisholm, S. W., et al. (2006). Sequencing genomes from single cells by polymerase cloning. Nat. Biotechnol. 24, 680-686. doi: 10.1038/nbt1214
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 680-686
-
-
Zhang, K.1
Martiny, A.C.2
Reppas, N.B.3
Barry, K.W.4
Malek, J.5
Chisholm, S.W.6
-
142
-
-
85010471377
-
Development of a facile droplet-based single-cell isolation platform for cultivation and genomic analysis in microorganisms
-
Zhang, Q., Wang, T., Zhou, Q., Zhang, P., Gong, Y., Gou, H., et al. (2017). Development of a facile droplet-based single-cell isolation platform for cultivation and genomic analysis in microorganisms. Sci. Rep. 7:41192. doi: 10.1038/srep41192
-
(2017)
Sci. Rep
, vol.7
, pp. 41192
-
-
Zhang, Q.1
Wang, T.2
Zhou, Q.3
Zhang, P.4
Gong, Y.5
Gou, H.6
-
143
-
-
84940118897
-
Towards high-throughput microfluidic Raman-activated cell sorting
-
Zhang, Q., Zhang, P., Gou, H., Mou, C., Huang, W. E., Yang, M., et al. (2015). Towards high-throughput microfluidic Raman-activated cell sorting. Analyst 140, 6163-6174. doi: 10.1039/c5an01074h
-
(2015)
Analyst
, vol.140
, pp. 6163-6174
-
-
Zhang, Q.1
Zhang, P.2
Gou, H.3
Mou, C.4
Huang, W.E.5
Yang, M.6
-
144
-
-
85013200683
-
Comparative analysis of single-cell RNA sequencing methods
-
Ziegenhain, C., Vieth, B., Parekh, S., Reinius, B., Guillaumet-Adkins, A., Smets, M., et al. (2017). Comparative analysis of single-cell RNA sequencing methods. Mol. Cell 65, 631-643.e4. doi: 10.1016/j.molcel.2017.01.023
-
(2017)
Mol. Cell
, vol.65
, pp. 631-643.e4
-
-
Ziegenhain, C.1
Vieth, B.2
Parekh, S.3
Reinius, B.4
Guillaumet-Adkins, A.5
Smets, M.6
-
145
-
-
84871461434
-
Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
-
Zong, C., Lu, S., Chapman, A. R., and Xie, X. S. (2012). Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338, 1622-1626. doi: 10.1126/science.1229164
-
(2012)
Science
, vol.338
, pp. 1622-1626
-
-
Zong, C.1
Lu, S.2
Chapman, A.R.3
Xie, X.S.4
|