-
1
-
-
0034680168
-
Microbial genome sequencing
-
Fraser, C. M., Eisen, J. A. & Salzberg, S. L. Microbial genome sequencing. Nature 406, 799-803 (2000).
-
(2000)
Nature
, vol.406
, pp. 799-803
-
-
Fraser, C.M.1
Eisen, J.A.2
Salzberg, S.L.3
-
2
-
-
38549144166
-
The Genomes on Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
-
database issue
-
Liolios, K., Mavromatis, K., Tavernarakis, N. & Kyrpides, N. C. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 36 (database issue), D475-D479 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Liolios, K.1
Mavromatis, K.2
Tavernarakis, N.3
Kyrpides, N.C.4
-
3
-
-
0036181778
-
Exploring prokaryotic diversity in the genomic era
-
REVIEWS0003.1-REVIEWS0003.8
-
Hugenholtz, P. Exploring prokaryotic diversity in the genomic era. Genome Biol. 3, REVIEWS0003.1-REVIEWS0003.8 (2002).
-
(2002)
Genome Biol.
, vol.3
-
-
Hugenholtz, P.1
-
4
-
-
0033783996
-
Assessing evolutionary relationships among microbes from whole-genome analysis
-
Eisen, J. A. Assessing evolutionary relationships among microbes from whole-genome analysis. Curr. Opin. Microbiol. 3, 475-480 (2000).
-
(2000)
Curr. Opin. Microbiol.
, vol.3
, pp. 475-480
-
-
Eisen, J.A.1
-
5
-
-
62649155346
-
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
-
Wu, D. et al. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS One 4, e4207 (2009).
-
(2009)
PLoS One
, vol.4
-
-
Wu, D.1
-
6
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace, N. R. A molecular view of microbial diversity and the biosphere. Science 276, 734-740 (1997).
-
(1997)
Science
, vol.276
, pp. 734-740
-
-
Pace, N.R.1
-
7
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T. Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072 (2006).
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
Desantis, T.Z.1
-
8
-
-
0035161543
-
Genomes OnLine Database (GOLD): A monitor of genome projects world-wide
-
Bernal, A., Ear, U. & Kyrpides, N. Genomes OnLine Database (GOLD): a monitor of genome projects world-wide. Nucleic Acids Res. 29, 126-127 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 126-127
-
-
Bernal, A.1
Ear, U.2
Kyrpides, N.3
-
10
-
-
0035829583
-
Sequenced strains must be saved from extinction
-
Ward, N., Eisen, J., Fraser, C. & Stackebrandt, E. Sequenced strains must be saved from extinction. Nature 414, 148 (2001).
-
(2001)
Nature
, vol.414
, pp. 148
-
-
Ward, N.1
Eisen, J.2
Fraser, C.3
Stackebrandt, E.4
-
12
-
-
43449108562
-
The minimum information about a genome sequence (MIGS) specification
-
Field, D. et al. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnol. 26, 541-547 (2008).
-
(2008)
Nature Biotechnol.
, vol.26
, pp. 541-547
-
-
Field, D.1
-
13
-
-
38549101119
-
The integrated microbial genomes (IMG) system in 2007: Data content and analysis tool extensions
-
database issue
-
Markowitz, V. M. et al. The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. 36 (database issue), D528-D533 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Markowitz, V.M.1
-
14
-
-
43849089834
-
Microbial diversity and the genetic nature of microbial species
-
Achtman, M. & Wagner, M. Microbial diversity and the genetic nature of microbial species. Nature Rev. Microbiol. 6, 431-440 (2008).
-
(2008)
Nature Rev. Microbiol.
, vol.6
, pp. 431-440
-
-
Achtman, M.1
Wagner, M.2
-
15
-
-
58149231047
-
The impact of reticulate evolution on genome phylogeny
-
Beiko, R. G., Doolittle, W. F. & Charlebois, R. L. The impact of reticulate evolution on genome phylogeny. Syst. Biol. 57, 844-856 (2008).
-
(2008)
Syst. Biol.
, vol.57
, pp. 844-856
-
-
Beiko, R.G.1
Doolittle, W.F.2
Charlebois, R.L.3
-
16
-
-
55649110049
-
A simple, fast, and accurate method of phylogenomic inference
-
Wu, M. & Eisen, J. A. A simple, fast, and accurate method of phylogenomic inference. Genome Biol. 9, R151 (2008).
-
(2008)
Genome Biol.
, vol.9
-
-
Wu, M.1
Eisen, J.A.2
-
17
-
-
34548546830
-
Resource-aware taxon selection for maximizing phylogenetic diversity
-
Pardi, F. & Goldman, N. Resource-aware taxon selection for maximizing phylogenetic diversity. Syst. Biol. 56, 431-444 (2007).
-
(2007)
Syst. Biol.
, vol.56
, pp. 431-444
-
-
Pardi, F.1
Goldman, N.2
-
18
-
-
0037223416
-
Myriads of protein families, and still counting
-
Kunin, V., Cases, I., Enright, A. J., de Lorenzo, V. & Ouzounis, C. A. Myriads of protein families, and still counting. Genome Biol. 4, 401 (2003).
-
(2003)
Genome Biol.
, vol.4
, pp. 401
-
-
Kunin, V.1
Cases, I.2
Enright, A.J.3
De Lorenzo, V.4
Ouzounis, C.A.5
-
19
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte, E. M. et al. Detecting protein function and protein-protein interactions from genome sequences. Science 285, 751-753 (1999).
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
-
20
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright, A. J., Iliopoulos, I., Kyrpides, N. C. & Ouzounis, C. A. Protein interaction maps for complete genomes based on gene fusion events. Nature 402, 86-90 (1999).
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
21
-
-
0642368518
-
Production of b-xylanase and b-xylosidase by the extremely halophilic archaeon Halorhabdus utahensis
-
Wainø, M. & Ingvorsen, K. Production of b-xylanase and b-xylosidase by the extremely halophilic archaeon Halorhabdus utahensis.Extremophiles 7, 87-93 (2003).
-
(2003)
Extremophiles
, vol.7
, pp. 87-93
-
-
Wainø, M.1
Ingvorsen, K.2
-
22
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R. et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709-1712 (2007).
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
-
23
-
-
0036010591
-
Bacterial actins? An evolutionary perspective
-
Doolittle, R. F. & York, A. L. Bacterial actins? An evolutionary perspective. Bioessays 24, 293-296 (2002).
-
(2002)
Bioessays
, vol.24
, pp. 293-296
-
-
Doolittle, R.F.1
York, A.L.2
-
24
-
-
0032556187
-
The chondramides: Cytostatic agents from myxobacteria acting on the actin cytoskeleton
-
Sasse, F., Kunze, B., Gronewold, T. M. & Reichenbach, H. The chondramides: cytostatic agents from myxobacteria acting on the actin cytoskeleton. J. Natl. Cancer Inst. 90, 1559-1563 (1998).
-
(1998)
J. Natl. Cancer Inst.
, vol.90
, pp. 1559-1563
-
-
Sasse, F.1
Kunze, B.2
Gronewold, T.M.3
Reichenbach, H.4
-
25
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J. & Ji, H. Next-generation DNA sequencing. Nature Biotechnol. 26, 1135-1145 (2008).
-
(2008)
Nature Biotechnol.
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
26
-
-
57349141505
-
A bioinformatician's guide to metagenomics
-
Kunin, V., Copeland, A., Lapidus, A., Mavromatis, K. & Hugenholtz, P. A bioinformatician's guide to metagenomics. Microbiol. Mol. Biol. Rev. 72, 557-578 (2008).
-
(2008)
Microbiol. Mol. Biol. Rev.
, vol.72
, pp. 557-578
-
-
Kunin, V.1
Copeland, A.2
Lapidus, A.3
Mavromatis, K.4
Hugenholtz, P.5
-
27
-
-
45849153461
-
Genomic sequencing of single microbial cells from environmental samples
-
Ishoey, T., Woyke, T., Stepanauskas, R., Novotny, M. & Lasken, R. S. Genomic sequencing of single microbial cells from environmental samples. Curr. Opin. Microbiol. 11, 198-204 (2008).
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, pp. 198-204
-
-
Ishoey, T.1
Woyke, T.2
Stepanauskas, R.3
Novotny, M.4
Lasken, R.S.5
-
28
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright, A. J., Van Dongen, S. & Ouzounis, C. A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30, 1575-1584 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
29
-
-
0034681286
-
21-activation of the regulated actin-activated myosin ATPase observed with Dictyostelium/Tetrahymena actin chimeras
-
21-activation of the regulated actin-activated myosin ATPase observed with Dictyostelium/Tetrahymena actin chimeras. J. Mol. Biol. 296, 579-595 (2000).
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 579-595
-
-
Matsuura, Y.1
-
30
-
-
34047269226
-
Optimizing phylogenetic diversity under constraints
-
Moulton, V., Semple, C. & Steel, M. Optimizing phylogenetic diversity under constraints. J. Theor. Biol. 246, 186-194 (2007).
-
(2007)
J. Theor. Biol.
, vol.246
, pp. 186-194
-
-
Moulton, V.1
Semple, C.2
Steel, M.3
|