-
2
-
-
80755168360
-
Genomic analysis at the single-cell level
-
Kalisky, T.; Blainey, P.; Quake, S.R. Genomic analysis at the single-cell level. Annu. Rev. Genet. 2011, 45, 431-445.
-
(2011)
Annu. Rev. Genet.
, vol.45
, pp. 431-445
-
-
Kalisky, T.1
Blainey, P.2
Quake, S.R.3
-
3
-
-
84868098266
-
Single cell genomics: An individual look at microbes
-
Stepanauskas, R. Single cell genomics: An individual look at microbes. Curr. Opin. Microbiol. 2012, 15, 613-620.
-
(2012)
Curr. Opin. Microbiol.
, vol.15
, pp. 613-620
-
-
Stepanauskas, R.1
-
4
-
-
0034830935
-
Rapid amplification of plasmid and phage DNA using Phi29 DNA polymerase and multiply-primed rolling circle amplification
-
Dean, F.B.; Nelson, J.R.; Giesler, T.L.; Lasken, R.S. Rapid amplification of plasmid and phage DNA using Phi29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 2001, 11, 1095-1099.
-
(2001)
Genome Res.
, vol.11
, pp. 1095-1099
-
-
Dean, F.B.1
Nelson, J.R.2
Giesler, T.L.3
Lasken, R.S.4
-
5
-
-
33745085561
-
Sequencing genomes from single cells by polymerase cloning
-
Zhang, K.; Martiny, A.C.; Reppas, N.B.; Barry, K.W.; Malek, J.; Chisholm, S.W.; Church, G.M. Sequencing genomes from single cells by polymerase cloning. Nat. Biotechnol. 2006, 24, 680-686.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 680-686
-
-
Zhang, K.1
Martiny, A.C.2
Reppas, N.B.3
Barry, K.W.4
Malek, J.5
Chisholm, S.W.6
Church, G.M.7
-
6
-
-
65449134335
-
Assembling the marine metagenome, one cell at a time
-
doi:10.1371/journal.pone.0005299
-
Woyke, T.; Xie, G.; Copeland, A.; González, J.M.; Han, C.; Kiss, H.; Saw, J.H.; Senin, P.; Yang, C.; Chatterji, S.; et al. Assembling the marine metagenome, one cell at a time. PLoS One 2009, 4, e5299, doi:10.1371/journal.pone.0005299.
-
(2009)
PLoS One
, vol.4
-
-
Woyke, T.1
Xie, G.2
Copeland, A.3
González, J.M.4
Han, C.5
Kiss, H.6
Saw, J.H.7
Senin, P.8
Yang, C.9
Chatterji, S.10
-
7
-
-
77953807223
-
One bacterial cell, one complete genome
-
doi:10.1371/journal.pone.0010314
-
Woyke, T.; Tighe, D.; Mavromatis, K.; Clum, A.; Copeland, A.; Schackwitz, W.; Lapidus, A.; Wu, D.; McCutcheon, J.P.; McDonald, B.R.; et al. One bacterial cell, one complete genome. PLoS One 2010, 5, e10314, doi:10.1371/journal.pone.0010314.
-
(2010)
PLoS One
, vol.5
-
-
Woyke, T.1
Tighe, D.2
Mavromatis, K.3
Clum, A.4
Copeland, A.5
Schackwitz, W.6
Lapidus, A.7
Wu, D.8
McCutcheon, J.P.9
McDonald, B.R.10
-
8
-
-
77649200047
-
Preparation of genomic DNA from a single species of uncultured magnetotactic bacterium by multiple-displacement amplification
-
Arakaki, A.; Shibusawa, M.; Hosokawa, M.; Matsunaga, T. Preparation of genomic DNA from a single species of uncultured magnetotactic bacterium by multiple-displacement amplification. Appl. Environ. Microbiol. 2010, 76, 1480-1485.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1480-1485
-
-
Arakaki, A.1
Shibusawa, M.2
Hosokawa, M.3
Matsunaga, T.4
-
9
-
-
84871461434
-
Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
-
Zong, C.; Lu, S.; Chapman, A.R.; Xie, X.S. Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 2012, 338, 1622-1626.
-
(2012)
Science
, vol.338
, pp. 1622-1626
-
-
Zong, C.1
Lu, S.2
Chapman, A.R.3
Xie, X.S.4
-
10
-
-
34848895943
-
Nanoliter reactors improve multiple displacement amplification of genomes from single cells
-
doi:10.1371/journal.pgen.0030155.
-
Marcy, Y.; Ishoey, T.; Lasken, R.S.; Stockwell, T.B.; Walenz, B.P.; Halpern, A.L.; Beeson, K.Y.; Goldberg, S.M.D.; Quake, S.R. Nanoliter reactors improve multiple displacement amplification of genomes from single cells. Plos Genet. 2007, 3, e155, doi:10.1371/journal.pgen.0030155.
-
(2007)
Plos Genet.
, vol.3
-
-
Marcy, Y.1
Ishoey, T.2
Lasken, R.S.3
Stockwell, T.B.4
Walenz, B.P.5
Halpern, A.L.6
Beeson, K.Y.7
Goldberg, S.M.D.8
Quake, S.R.9
-
11
-
-
34547540925
-
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
-
Marcy, Y.; Ouverney, C.; Bik, E.M.; Lösekann, T.; Ivanova, N.; Martin, H.G.; Szeto, E.; Platt, D.; Hugenholtz, P.; Relman, D.A.; et al. Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc. Natl. Acad. Sci. USA 2007, 104, 11889-11894.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 11889-11894
-
-
Marcy, Y.1
Ouverney, C.2
Bik, E.M.3
Lösekann, T.4
Ivanova, N.5
Martin, H.G.6
Szeto, E.7
Platt, D.8
Hugenholtz, P.9
Relman, D.A.10
-
12
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
doi:10.1371/journal.pone.0016626
-
Blainey, P.C.; Mosier, A.C.; Potanina, A.; Francis, C.A.; Quake, S.R. Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 2011, 6, e16626, doi:10.1371/journal.pone.0016626.
-
(2011)
PLoS One
, vol.6
-
-
Blainey, P.C.1
Mosier, A.C.2
Potanina, A.3
Francis, C.A.4
Quake, S.R.5
-
13
-
-
84864258558
-
Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm
-
Wang, J.; Fan, H.C.; Behr, B.; Quake, S.R. Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm. Cell 2012, 150, 402-412.
-
(2012)
Cell
, vol.150
, pp. 402-412
-
-
Wang, J.1
Fan, H.C.2
Behr, B.3
Quake, S.R.4
-
14
-
-
0030606607
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko, T.; Sato, S.; Kotani, H.; Tanaka, A.; Asamizu, E.; Nakamura, Y.; Miyajima, N.; Hirosawa, M.; Sugiura, M.; Sasamoto, S.; et al. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 1996, 3, 109-136.
-
(1996)
DNA Res.
, vol.3
, pp. 109-136
-
-
Kaneko, T.1
Sato, S.2
Kotani, H.3
Tanaka, A.4
Asamizu, E.5
Nakamura, Y.6
Miyajima, N.7
Hirosawa, M.8
Sugiura, M.9
Sasamoto, S.10
-
15
-
-
0033968660
-
Cyanobacterial cell walls: News from an unusual prokaryotic envelope
-
Hoiczyk, E.; Hansel, A. Cyanobacterial cell walls: News from an unusual prokaryotic envelope. J. Bacteriol. 2000, 182, 1191-1199.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1191-1199
-
-
Hoiczyk, E.1
Hansel, A.2
-
16
-
-
76049124786
-
Nickel-inducible lysis system in Synechocystis sp. PCC 6803
-
Liu, X.; Curtiss, R. Nickel-inducible lysis system in Synechocystis sp. PCC 6803. Proc. Natl. Acad. Sci. USA 2009, 106, 21550-21554.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 21550-21554
-
-
Liu, X.1
Curtiss, R.2
-
17
-
-
79952351866
-
Digital MDA for enumeration of total nucleic acid contamination
-
doi:10.1093/nar/gkq1074
-
Blainey, P.C.; Quake, S.R. Digital MDA for enumeration of total nucleic acid contamination. Nucleic Acids Res. 2011, 39, e19, doi:10.1093/nar/gkq1074.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Blainey, P.C.1
Quake, S.R.2
-
18
-
-
79951576503
-
Whole gene amplification and protein separation from a few cells
-
Chueh, B.; Li, C.-W.; Wu, H.; Davison, M.; Wei, H.; Bhaya, D.; Zare, R.N. Whole gene amplification and protein separation from a few cells. Anal. Biochem. 2011, 411, 64-70.
-
(2011)
Anal. Biochem.
, vol.411
, pp. 64-70
-
-
Chueh, B.1
Li, C.-W.2
Wu, H.3
Davison, M.4
Wei, H.5
Bhaya, D.6
Zare, R.N.7
-
19
-
-
84862245279
-
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
-
doi:10.1186/1471-2105-13-134.
-
Ye, J.; Coulouris, G.; Zaretskaya, I.; Cutcutache, I.; Rozen, S.; Madden, T.L. Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinforma. 2012, 13, 134, doi:10.1186/1471-2105-13-134.
-
(2012)
BMC Bioinforma.
, vol.13
, pp. 134
-
-
Ye, J.1
Coulouris, G.2
Zaretskaya, I.3
Cutcutache, I.4
Rozen, S.5
Madden, T.L.6
-
20
-
-
80054791084
-
Decontamination of MDA reagents for single cell whole genome amplification
-
doi:10.1371/journal.pone.0026161
-
Woyke, T.; Sczyrba, A.; Lee, J.; Rinke, C.; Tighe, D.; Clingenpeel, S.; Malmstrom, R.; Stepanauskas, R.; Cheng, J.-F. Decontamination of MDA reagents for single cell whole genome amplification. PLoS One 2011, 6, e26161, doi:10.1371/journal.pone.0026161.
-
(2011)
PLoS One
, vol.6
-
-
Woyke, T.1
Sczyrba, A.2
Lee, J.3
Rinke, C.4
Tighe, D.5
Clingenpeel, S.6
Malmstrom, R.7
Stepanauskas, R.8
Cheng, J.-F.9
-
21
-
-
0034562555
-
A simplified protocol for preparing DNA from filamentous cyanobacteria
-
Wu, X.; Zarka, A.; Boussiba, S. A simplified protocol for preparing DNA from filamentous cyanobacteria. Plant Mol. Biol. Report. 2000, 18, 385-392.
-
(2000)
Plant Mol. Biol. Report.
, vol.18
, pp. 385-392
-
-
Wu, X.1
Zarka, A.2
Boussiba, S.3
-
22
-
-
84885350369
-
-
Ph.D. Thesis, Stanford University, Stanford, CA, USA, October
-
Hall, E.W. Microfluidic platforms for single-cell analyses. Ph.D. Thesis, Stanford University, Stanford, CA, USA, October 2012.
-
(2012)
Microfluidic platforms for single-cell analyses
-
-
Hall, E.W.1
|