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Volumn 161, Issue 5, 2015, Pages 1187-1201

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells

Author keywords

[No Author keywords available]

Indexed keywords

LEUKEMIA INHIBITORY FACTOR; MICROSPHERE;

EID: 84929684998     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2015.04.044     Document Type: Article
Times cited : (2520)

References (64)
  • 1
    • 69549135015 scopus 로고    scopus 로고
    • Beating Poisson encapsulation statistics using close-packed ordering
    • A.R. Abate, C.H. Chen, J.J. Agresti, and D.A. Weitz Beating Poisson encapsulation statistics using close-packed ordering Lab Chip 9 2009 2628 2631
    • (2009) Lab Chip , vol.9 , pp. 2628-2631
    • Abate, A.R.1    Chen, C.H.2    Agresti, J.J.3    Weitz, D.A.4
  • 7
    • 77952915049 scopus 로고    scopus 로고
    • Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript
    • M.A. Canham, A.A. Sharov, M.S. Ko, and J.M. Brickman Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript PLoS Biol. 8 2010 e1000379
    • (2010) PLoS Biol. , vol.8 , pp. e1000379
    • Canham, M.A.1    Sharov, A.A.2    Ko, M.S.3    Brickman, J.M.4
  • 9
    • 0037343917 scopus 로고    scopus 로고
    • Single-cell transcript analysis of pancreas development
    • M.-K. Chiang, and D.A. Melton Single-cell transcript analysis of pancreas development Dev. Cell 4 2003 383 393
    • (2003) Dev. Cell , vol.4 , pp. 383-393
    • Chiang, M.-K.1    Melton, D.A.2
  • 10
    • 84882585786 scopus 로고    scopus 로고
    • Ultrahigh-throughput Mammalian single-cell reverse-transcriptase polymerase chain reaction in microfluidic drops
    • D.J. Eastburn, A. Sciambi, and A.R. Abate Ultrahigh-throughput Mammalian single-cell reverse-transcriptase polymerase chain reaction in microfluidic drops Anal. Chem. 85 2013 8016 8021
    • (2013) Anal. Chem. , vol.85 , pp. 8016-8021
    • Eastburn, D.J.1    Sciambi, A.2    Abate, A.R.3
  • 11
    • 0842265003 scopus 로고    scopus 로고
    • Cdk6-cyclin D3 activity in murine ES cells is resistant to inhibition by p16(INK4a)
    • R. Faast, J. White, P. Cartwright, L. Crocker, B. Sarcevic, and S. Dalton Cdk6-cyclin D3 activity in murine ES cells is resistant to inhibition by p16(INK4a) Oncogene 23 2004 491 502
    • (2004) Oncogene , vol.23 , pp. 491-502
    • Faast, R.1    White, J.2    Cartwright, P.3    Crocker, L.4    Sarcevic, B.5    Dalton, S.6
  • 12
    • 79959327151 scopus 로고    scopus 로고
    • Counting individual DNA molecules by the stochastic attachment of diverse labels
    • G.K. Fu, J. Hu, P.H. Wang, and S.P. Fodor Counting individual DNA molecules by the stochastic attachment of diverse labels Proc. Natl. Acad. Sci. USA 108 2011 9026 9031
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 9026-9031
    • Fu, G.K.1    Hu, J.2    Wang, P.H.3    Fodor, S.P.4
  • 13
    • 84876563518 scopus 로고    scopus 로고
    • The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells
    • F. Gao, Z. Wei, W. An, K. Wang, and W. Lu The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells Sci Rep. 3 2013 1588
    • (2013) Sci Rep. , vol.3 , pp. 1588
    • Gao, F.1    Wei, Z.2    An, W.3    Wang, K.4    Lu, W.5
  • 15
    • 84901831004 scopus 로고    scopus 로고
    • Validation of noise models for single-cell transcriptomics
    • D. Grün, L. Kester, and A. van Oudenaarden Validation of noise models for single-cell transcriptomics Nat. Methods 11 2014 637 640
    • (2014) Nat. Methods , vol.11 , pp. 637-640
    • Grün, D.1    Kester, L.2    Van Oudenaarden, A.3
  • 16
    • 77951912210 scopus 로고    scopus 로고
    • Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst
    • G. Guo, M. Huss, G.Q. Tong, C. Wang, L. Li Sun, N.D. Clarke, and P. Robson Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst Dev. Cell 18 2010 675 685
    • (2010) Dev. Cell , vol.18 , pp. 675-685
    • Guo, G.1    Huss, M.2    Tong, G.Q.3    Wang, C.4    Li Sun, L.5    Clarke, N.D.6    Robson, P.7
  • 17
    • 84862212456 scopus 로고    scopus 로고
    • Droplet microfluidics for high-throughput biological assays
    • M.T. Guo, A. Rotem, J.A. Heyman, and D.A. Weitz Droplet microfluidics for high-throughput biological assays Lab Chip 12 2012 2146 2155
    • (2012) Lab Chip , vol.12 , pp. 2146-2155
    • Guo, M.T.1    Rotem, A.2    Heyman, J.A.3    Weitz, D.A.4
  • 18
    • 84866953427 scopus 로고    scopus 로고
    • CEL-Seq: Single-cell RNA-Seq by multiplexed linear amplification
    • T. Hashimshony, F. Wagner, N. Sher, and I. Yanai CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification Cell Rep. 2 2012 666 673
    • (2012) Cell Rep. , vol.2 , pp. 666-673
    • Hashimshony, T.1    Wagner, F.2    Sher, N.3    Yanai, I.4
  • 19
    • 53049092465 scopus 로고    scopus 로고
    • Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states
    • K. Hayashi, S.M. Lopes, F. Tang, and M.A. Surani Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states Cell Stem Cell 3 2008 391 401
    • (2008) Cell Stem Cell , vol.3 , pp. 391-401
    • Hayashi, K.1    Lopes, S.M.2    Tang, F.3    Surani, M.A.4
  • 20
    • 70449529712 scopus 로고    scopus 로고
    • Reverse engineering and verification of gene networks: Principles, assumptions, and limitations of present methods and future perspectives
    • F. He, R. Balling, and A.-P. Zeng Reverse engineering and verification of gene networks: principles, assumptions, and limitations of present methods and future perspectives J. Biotechnol. 144 2009 190 203
    • (2009) J. Biotechnol. , vol.144 , pp. 190-203
    • He, F.1    Balling, R.2    Zeng, A.-P.3
  • 21
    • 68049097008 scopus 로고    scopus 로고
    • Epigenetic dynamics of stem cells and cell lineage commitment: Digging Waddington's canal
    • M. Hemberger, W. Dean, and W. Reik Epigenetic dynamics of stem cells and cell lineage commitment: digging Waddington's canal Nat. Rev. Mol. Cell Biol. 10 2009 526 537
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 526-537
    • Hemberger, M.1    Dean, W.2    Reik, W.3
  • 26
    • 69249215528 scopus 로고    scopus 로고
    • The cyclic gene Hes1 contributes to diverse differentiation responses of embryonic stem cells
    • T. Kobayashi, H. Mizuno, I. Imayoshi, C. Furusawa, K. Shirahige, and R. Kageyama The cyclic gene Hes1 contributes to diverse differentiation responses of embryonic stem cells Genes Dev. 23 2009 1870 1875
    • (2009) Genes Dev. , vol.23 , pp. 1870-1875
    • Kobayashi, T.1    Mizuno, H.2    Imayoshi, I.3    Furusawa, C.4    Shirahige, K.5    Kageyama, R.6
  • 28
    • 33846705486 scopus 로고    scopus 로고
    • Network neighborhood analysis with the multi-node topological overlap measure
    • A. Li, and S. Horvath Network neighborhood analysis with the multi-node topological overlap measure Bioinformatics 23 2007 222 231
    • (2007) Bioinformatics , vol.23 , pp. 222-231
    • Li, A.1    Horvath, S.2
  • 29
    • 81955161928 scopus 로고    scopus 로고
    • We are all individuals: Causes and consequences of non-genetic heterogeneity in mammalian cells
    • A. Loewer, and G. Lahav We are all individuals: causes and consequences of non-genetic heterogeneity in mammalian cells Curr. Opin. Genet. Dev. 21 2011 753 758
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 753-758
    • Loewer, A.1    Lahav, G.2
  • 30
    • 41749107942 scopus 로고    scopus 로고
    • Stochasticity and cell fate
    • R. Losick, and C. Desplan Stochasticity and cell fate Science 320 2008 65 68
    • (2008) Science , vol.320 , pp. 65-68
    • Losick, R.1    Desplan, C.2
  • 34
    • 0000263234 scopus 로고
    • Dros. Inf. Serv.tribution of eigenvalues for some sets of random matrices
    • V.A. Marčenko, and L.A. Pastur Dros. Inf. Serv.TRIBUTION OF EIGENVALUES FOR SOME SETS OF RANDOM MATRICES Mathematics of the USSR-Sbornik 1 1967 457 483
    • (1967) Mathematics of the USSR-Sbornik , vol.1 , pp. 457-483
    • Marčenko, V.A.1    Pastur, L.A.2
  • 35
    • 82555169760 scopus 로고    scopus 로고
    • Gene expression heterogeneities in embryonic stem cell populations: Origin and function
    • A. Martinez Arias, and J.M. Brickman Gene expression heterogeneities in embryonic stem cell populations: origin and function Curr. Opin. Cell Biol. 23 2011 650 656
    • (2011) Curr. Opin. Cell Biol. , vol.23 , pp. 650-656
    • Martinez Arias, A.1    Brickman, J.M.2
  • 37
    • 76149087152 scopus 로고    scopus 로고
    • Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal
    • K.K. Niakan, H. Ji, R. Maehr, S.A. Vokes, K.T. Rodolfa, R.I. Sherwood, M. Yamaki, J.T. Dimos, A.E. Chen, and D.A. Melton Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal Genes Dev. 24 2010 312 326
    • (2010) Genes Dev. , vol.24 , pp. 312-326
    • Niakan, K.K.1    Ji, H.2    Maehr, R.3    Vokes, S.A.4    Rodolfa, K.T.5    Sherwood, R.I.6    Yamaki, M.7    Dimos, J.T.8    Chen, A.E.9    Melton, D.A.10
  • 38
    • 0031833476 scopus 로고    scopus 로고
    • Progressive lineage analysis by cell sorting and culture identifies FLK1+VE-cadherin+ cells at a diverging point of endothelial and hemopoietic lineages
    • S.I. Nishikawa, S. Nishikawa, M. Hirashima, N. Matsuyoshi, and H. Kodama Progressive lineage analysis by cell sorting and culture identifies FLK1+VE-cadherin+ cells at a diverging point of endothelial and hemopoietic lineages Development 125 1998 1747 1757
    • (1998) Development , vol.125 , pp. 1747-1757
    • Nishikawa, S.I.1    Nishikawa, S.2    Hirashima, M.3    Matsuyoshi, N.4    Kodama, H.5
  • 41
    • 20344389483 scopus 로고    scopus 로고
    • Models of stochastic gene expression
    • J. Paulsson Models of stochastic gene expression Phys. Life Rev. 2 2005 157 175
    • (2005) Phys. Life Rev. , vol.2 , pp. 157-175
    • Paulsson, J.1
  • 42
    • 0030560897 scopus 로고    scopus 로고
    • Antisense RNA Amplification: A Linear Amplification Method for Analyzing the mRNA Population from Single Living Cells
    • J. Phillips, and J.H. Eberwine Antisense RNA Amplification: A Linear Amplification Method for Analyzing the mRNA Population from Single Living Cells Methods 10 1996 283 288
    • (1996) Methods , vol.10 , pp. 283-288
    • Phillips, J.1    Eberwine, J.H.2
  • 48
    • 79958263078 scopus 로고    scopus 로고
    • Strategies for homeostatic stem cell self-renewal in adult tissues
    • B.D. Simons, and H. Clevers Strategies for homeostatic stem cell self-renewal in adult tissues Cell 145 2011 851 862
    • (2011) Cell , vol.145 , pp. 851-862
    • Simons, B.D.1    Clevers, H.2
  • 52
    • 0036790975 scopus 로고    scopus 로고
    • Intrinsic and extrinsic contributions to stochasticity in gene expression
    • P.S. Swain, M.B. Elowitz, and E.D. Siggia Intrinsic and extrinsic contributions to stochasticity in gene expression Proc. Natl. Acad. Sci. USA 99 2002 12795 12800
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12795-12800
    • Swain, P.S.1    Elowitz, M.B.2    Siggia, E.D.3
  • 54
    • 84901473732 scopus 로고    scopus 로고
    • Transcription factor heterogeneity in pluripotent stem cells: A stochastic advantage
    • M.E. Torres-Padilla, and I. Chambers Transcription factor heterogeneity in pluripotent stem cells: a stochastic advantage Development 141 2014 2173 2181
    • (2014) Development , vol.141 , pp. 2173-2181
    • Torres-Padilla, M.E.1    Chambers, I.2
  • 55
    • 42149192008 scopus 로고    scopus 로고
    • Identification and characterization of subpopulations in undifferentiated ES cell culture
    • Y. Toyooka, D. Shimosato, K. Murakami, K. Takahashi, and H. Niwa Identification and characterization of subpopulations in undifferentiated ES cell culture Development 135 2008 909 918
    • (2008) Development , vol.135 , pp. 909-918
    • Toyooka, Y.1    Shimosato, D.2    Murakami, K.3    Takahashi, K.4    Niwa, H.5
  • 57
    • 7244226383 scopus 로고    scopus 로고
    • Refinement of gene expression patterns in the early Xenopus embryo
    • F.C. Wardle, and J.C. Smith Refinement of gene expression patterns in the early Xenopus embryo Development 131 2004 4687 4696
    • (2004) Development , vol.131 , pp. 4687-4696
    • Wardle, F.C.1    Smith, J.C.2
  • 58
    • 30444461346 scopus 로고    scopus 로고
    • Cell cycle control of embryonic stem cells
    • J. White, and S. Dalton Cell cycle control of embryonic stem cells Stem Cell Rev. 1 2005 131 138
    • (2005) Stem Cell Rev. , vol.1 , pp. 131-138
    • White, J.1    Dalton, S.2
  • 64
    • 84903473477 scopus 로고    scopus 로고
    • Otx2 and Oct4 drive early enhancer activation during embryonic stem cell transition from naive pluripotency
    • S.-H. Yang, T. Kalkan, C. Morissroe, H. Marks, H. Stunnenberg, A. Smith, and A.D. Sharrocks Otx2 and Oct4 drive early enhancer activation during embryonic stem cell transition from naive pluripotency Cell Rep. 7 2014 1968 1981
    • (2014) Cell Rep. , vol.7 , pp. 1968-1981
    • Yang, S.-H.1    Kalkan, T.2    Morissroe, C.3    Marks, H.4    Stunnenberg, H.5    Smith, A.6    Sharrocks, A.D.7


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