-
2
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J., and Ji H. Next-generation DNA sequencing. Nat Biotechnol 26 (2008) 1135-1145
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
3
-
-
36249021315
-
Genome-wide experimental determination of barriers to horizontal gene transfer
-
Sorek R., Zhu Y., Creevey C.J., Francino M.P., Bork P., and Rubin E.M. Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318 (2007) 1449-1452
-
(2007)
Science
, vol.318
, pp. 1449-1452
-
-
Sorek, R.1
Zhu, Y.2
Creevey, C.J.3
Francino, M.P.4
Bork, P.5
Rubin, E.M.6
-
4
-
-
33746605947
-
A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes
-
Goldberg S.M., Johnson J., Busam D., Feldblyum T., Ferriera S., Friedman R., Halpern A., Khouri H., Kravitz S.A., Lauro F.M., et al. A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci U S A 103 (2006) 11240-11245
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 11240-11245
-
-
Goldberg, S.M.1
Johnson, J.2
Busam, D.3
Feldblyum, T.4
Ferriera, S.5
Friedman, R.6
Halpern, A.7
Khouri, H.8
Kravitz, S.A.9
Lauro, F.M.10
-
5
-
-
53649100100
-
The development and impact of 454 sequencing
-
Rothberg J.M., and Leamon J.H. The development and impact of 454 sequencing. Nat Biotechnol 26 (2008) 1117-1124
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1117-1124
-
-
Rothberg, J.M.1
Leamon, J.H.2
-
6
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q., Garrity G.M., Tiedje J.M., and Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73 (2007) 5261-5267
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
7
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored
-
First paper on massive parallel 16S rRNA gene surveys. Deep sea samples were studied by targeting the V6 hypervariable region. By comparing against a custom V6 database, it was found that 80% of the sequences were divergent by 10% or more, suggesting an immense diversity present in rare members of the community.
-
Sogin M.L., Morrison H.G., Huber J.A., Mark Welch D., Huse S.M., Neal P.R., Arrieta J.M., and Herndl G.J. Microbial diversity in the deep sea and the underexplored. Proc Natl Acad Sci U S A 103 (2006) 12115-12120. First paper on massive parallel 16S rRNA gene surveys. Deep sea samples were studied by targeting the V6 hypervariable region. By comparing against a custom V6 database, it was found that 80% of the sequences were divergent by 10% or more, suggesting an immense diversity present in rare members of the community.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark Welch, D.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
8
-
-
34547800097
-
Pyrosequencing enumerates and contrasts soil microbial diversity
-
Roesch L.F., Fulthorpe R.R., Riva A., Casella G., Hadwin A.K., Kent A.D., Daroub S.H., Camargo F.A., Farmerie W.G., and Triplett E.W. Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J 1 (2007) 283-290
-
(2007)
ISME J
, vol.1
, pp. 283-290
-
-
Roesch, L.F.1
Fulthorpe, R.R.2
Riva, A.3
Casella, G.4
Hadwin, A.K.5
Kent, A.D.6
Daroub, S.H.7
Camargo, F.A.8
Farmerie, W.G.9
Triplett, E.W.10
-
9
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber J.A., Mark Welch D.B., Morrison H.G., Huse S.M., Neal P.R., Butterfield D.A., and Sogin M.L. Microbial population structures in the deep marine biosphere. Science 318 (2007) 97-100
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
Mark Welch, D.B.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
Sogin, M.L.7
-
10
-
-
36148937913
-
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
-
Parameswaran P., Jalili R., Tao L., Shokralla S., Gharizadeh B., Ronaghi M., and Fire A.Z. A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res 35 (2007) e130
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Parameswaran, P.1
Jalili, R.2
Tao, L.3
Shokralla, S.4
Gharizadeh, B.5
Ronaghi, M.6
Fire, A.Z.7
-
11
-
-
34548588390
-
Targeted high-throughput sequencing of tagged nucleic acid samples
-
Meyer M., Stenzel U., Myles S., Prufer K., and Hofreiter M. Targeted high-throughput sequencing of tagged nucleic acid samples. Nucleic Acids Res 35 (2007) e97
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Meyer, M.1
Stenzel, U.2
Myles, S.3
Prufer, K.4
Hofreiter, M.5
-
12
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Transcriptomic study using massive parallel sequence of cDNA. By comparing the transcripts against the yeast genome it was possible to detect alternative splicing, initiation sites and delimit the boundaries of genes.
-
Nagalakshmi U., Wang Z., Waern K., Shou C., Raha D., Gerstein M., and Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320 (2008) 1344-1349. Transcriptomic study using massive parallel sequence of cDNA. By comparing the transcripts against the yeast genome it was possible to detect alternative splicing, initiation sites and delimit the boundaries of genes.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
13
-
-
44349088153
-
Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system
-
Massive sequencing of cDNA using pyrosequencing. Putative new genes were found, these genes were probably missed by prediction algorithm because they were short or had low scores against known databases.
-
Mao C., Evans C., Jensen R.V., and Sobral B.W. Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system. BMC Microbiol 8 (2008) 72. Massive sequencing of cDNA using pyrosequencing. Putative new genes were found, these genes were probably missed by prediction algorithm because they were short or had low scores against known databases.
-
(2008)
BMC Microbiol
, vol.8
, pp. 72
-
-
Mao, C.1
Evans, C.2
Jensen, R.V.3
Sobral, B.W.4
-
14
-
-
57049182013
-
Challenges and Functional Applications, National Research Council of the National Academies
-
Committee on Metagenomics, National Academies Press, Washington, DC
-
Committee on Metagenomics. Challenges and Functional Applications, National Research Council of the National Academies. The New Science of Metagenomics: Revealing the Secrets of our Microbial Planet (2007), National Academies Press, Washington, DC
-
(2007)
The New Science of Metagenomics: Revealing the Secrets of our Microbial Planet
-
-
-
15
-
-
4444370893
-
Reverse methanogenesis: testing the hypothesis with environmental genomics
-
Hallam S.J., Putnam N., Preston C.M., Detter J.C., Rokhsar D., Richardson P.M., and DeLong E.F. Reverse methanogenesis: testing the hypothesis with environmental genomics. Science 305 (2004) 1457-1462
-
(2004)
Science
, vol.305
, pp. 1457-1462
-
-
Hallam, S.J.1
Putnam, N.2
Preston, C.M.3
Detter, J.C.4
Rokhsar, D.5
Richardson, P.M.6
DeLong, E.F.7
-
16
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson G.W., Chapman J., Hugenholtz P., Allen E.E., Ram R.J., Richardson P.M., Solovyev V.V., Rubin E.M., Rokhsar D.S., and Banfield J.F. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428 (2004) 37-43
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
17
-
-
33645741019
-
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
-
Strous M., Pelletier E., Mangenot S., Rattei T., Lehner A., Taylor M.W., Horn M., Daims H., Bartol-Mavel D., Wincker P., et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440 (2006) 790-794
-
(2006)
Nature
, vol.440
, pp. 790-794
-
-
Strous, M.1
Pelletier, E.2
Mangenot, S.3
Rattei, T.4
Lehner, A.5
Taylor, M.W.6
Horn, M.7
Daims, H.8
Bartol-Mavel, D.9
Wincker, P.10
-
18
-
-
34249933858
-
What's the 'meta' with metagenomics?
-
Steward G.F., and Rappe M.S. What's the 'meta' with metagenomics?. ISME J 1 (2007) 100-102
-
(2007)
ISME J
, vol.1
, pp. 100-102
-
-
Steward, G.F.1
Rappe, M.S.2
-
19
-
-
41649114407
-
Microbial community gene expression in ocean surface waters
-
A study of DNA and cDNA from the same marine community. Proof that gene expression in complex systems if possible by mapping the transcripts to the metagenome. Interestingly, some of the more highly expressed genes were hypothetical and a large fraction of cDNA reads were not present in databases, suggesting that large part of the microbial diversity remains hidden in the oceans.
-
Frias-Lopez J., Shi Y., Tyson G.W., Coleman M.L., Schuster S.C., Chisholm S.W., and Delong E.F. Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci U S A 105 (2008) 3805-3810. A study of DNA and cDNA from the same marine community. Proof that gene expression in complex systems if possible by mapping the transcripts to the metagenome. Interestingly, some of the more highly expressed genes were hypothetical and a large fraction of cDNA reads were not present in databases, suggesting that large part of the microbial diversity remains hidden in the oceans.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 3805-3810
-
-
Frias-Lopez, J.1
Shi, Y.2
Tyson, G.W.3
Coleman, M.L.4
Schuster, S.C.5
Chisholm, S.W.6
Delong, E.F.7
-
20
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram R.J., Verberkmoes N.C., Thelen M.P., Tyson G.W., Baker B.J., Blake II R.C., Shah M., Hettich R.L., and Banfield J.F. Community proteomics of a natural microbial biofilm. Science 308 (2005) 1915-1920
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
Verberkmoes, N.C.2
Thelen, M.P.3
Tyson, G.W.4
Baker, B.J.5
Blake II, R.C.6
Shah, M.7
Hettich, R.L.8
Banfield, J.F.9
-
21
-
-
34248159046
-
GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes
-
Description of the functional gene array Geochip
-
He Z., Gentry T.J., Schadt C.W., Wu L., Liebich J., Chong S.C., Huang Z., Wu W., Gu B., Jardine P., et al. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 1 (2007) 67-77. Description of the functional gene array Geochip
-
(2007)
ISME J
, vol.1
, pp. 67-77
-
-
He, Z.1
Gentry, T.J.2
Schadt, C.W.3
Wu, L.4
Liebich, J.5
Chong, S.C.6
Huang, Z.7
Wu, W.8
Gu, B.9
Jardine, P.10
-
22
-
-
34249932634
-
Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect
-
Yergeau E., Kang S., He Z., Zhou J., and Kowalchuk G.A. Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect. ISME J 1 (2007) 163-179
-
(2007)
ISME J
, vol.1
, pp. 163-179
-
-
Yergeau, E.1
Kang, S.2
He, Z.3
Zhou, J.4
Kowalchuk, G.A.5
-
23
-
-
34249939326
-
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs)
-
Leigh M.B., Pellizari V.H., Uhlik O., Sutka R., Rodrigues J., Ostrom N.E., Zhou J., and Tiedje J.M. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J 1 (2007) 134-148
-
(2007)
ISME J
, vol.1
, pp. 134-148
-
-
Leigh, M.B.1
Pellizari, V.H.2
Uhlik, O.3
Sutka, R.4
Rodrigues, J.5
Ostrom, N.E.6
Zhou, J.7
Tiedje, J.M.8
-
24
-
-
33748805463
-
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
-
First example of the use of high-density phylogenetic arrays to profile microbial communities in an uranium contaminated aquifer. The results suggest a role of member of the Geobacter spp. Geothrix fermentans in uranium reduction.
-
Brodie E.L., Desantis T.Z., Joyner D.C., Baek S.M., Larsen J.T., Andersen G.L., Hazen T.C., Richardson P.M., Herman D.J., Tokunaga T.K., et al. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol 72 (2006) 6288-6298. First example of the use of high-density phylogenetic arrays to profile microbial communities in an uranium contaminated aquifer. The results suggest a role of member of the Geobacter spp. Geothrix fermentans in uranium reduction.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 6288-6298
-
-
Brodie, E.L.1
Desantis, T.Z.2
Joyner, D.C.3
Baek, S.M.4
Larsen, J.T.5
Andersen, G.L.6
Hazen, T.C.7
Richardson, P.M.8
Herman, D.J.9
Tokunaga, T.K.10
-
25
-
-
34248159346
-
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
-
DeSantis T.Z., Brodie E.L., Moberg J.P., Zubieta I.X., Piceno Y.M., and Andersen G.L. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol 53 (2007) 371-383
-
(2007)
Microb Ecol
, vol.53
, pp. 371-383
-
-
DeSantis, T.Z.1
Brodie, E.L.2
Moberg, J.P.3
Zubieta, I.X.4
Piceno, Y.M.5
Andersen, G.L.6
-
26
-
-
33845342557
-
Microfluidic digital PCR enables multigene analysis of individual environmental bacteria
-
Ottesen E.A., Hong J.W., Quake S.R., and Leadbetter J.R. Microfluidic digital PCR enables multigene analysis of individual environmental bacteria. Science 314 (2006) 1464-1467
-
(2006)
Science
, vol.314
, pp. 1464-1467
-
-
Ottesen, E.A.1
Hong, J.W.2
Quake, S.R.3
Leadbetter, J.R.4
-
27
-
-
34547492897
-
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time
-
An approach that combines flow cytometry, whole genome amplification and screening to allow single cells to be separated and their genome amplified. The method allows targeting metabolic and phylogenetic markers in the same uncultured microbe.
-
Stepanauskas R., and Sieracki M.E. Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time. Proc Natl Acad Sci U S A 104 (2007) 9052-9057. An approach that combines flow cytometry, whole genome amplification and screening to allow single cells to be separated and their genome amplified. The method allows targeting metabolic and phylogenetic markers in the same uncultured microbe.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 9052-9057
-
-
Stepanauskas, R.1
Sieracki, M.E.2
-
28
-
-
34547540925
-
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
-
A microfluidic device that allows selection of specific uncultured bacterium and amplification and recovery of their genome.
-
Marcy Y., Ouverney C., Bik E.M., Losekann T., Ivanova N., Martin H.G., Szeto E., Platt D., Hugenholtz P., Relman D.A., et al. Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A 104 (2007) 11889-11894. A microfluidic device that allows selection of specific uncultured bacterium and amplification and recovery of their genome.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 11889-11894
-
-
Marcy, Y.1
Ouverney, C.2
Bik, E.M.3
Losekann, T.4
Ivanova, N.5
Martin, H.G.6
Szeto, E.7
Platt, D.8
Hugenholtz, P.9
Relman, D.A.10
-
29
-
-
0036250036
-
Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
-
Janssen P.H., Yates P.S., Grinton B.E., Taylor P.M., and Sait M. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 68 (2002) 2391-2396
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 2391-2396
-
-
Janssen, P.H.1
Yates, P.S.2
Grinton, B.E.3
Taylor, P.M.4
Sait, M.5
-
30
-
-
55949124350
-
Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand
-
A fine example of novel isolation methods that combine low nutrient conditions, and alternative gelling agents to recover novel bacteria from soils.
-
Stott M.B., Crowe M.A., Mountain B.W., Smirnova A.V., Hou S., Alam M., and Dunfield P.F. Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand. Environ Microbiol 10 (2008) 2030-2041. A fine example of novel isolation methods that combine low nutrient conditions, and alternative gelling agents to recover novel bacteria from soils.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2030-2041
-
-
Stott, M.B.1
Crowe, M.A.2
Mountain, B.W.3
Smirnova, A.V.4
Hou, S.5
Alam, M.6
Dunfield, P.F.7
-
31
-
-
17444372781
-
Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques
-
Tamaki H., Sekiguchi Y., Hanada S., Nakamura K., Nomura N., Matsumura M., and Kamagata Y. Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl Environ Microbiol 71 (2005) 2162-2169
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2162-2169
-
-
Tamaki, H.1
Sekiguchi, Y.2
Hanada, S.3
Nakamura, K.4
Nomura, N.5
Matsumura, M.6
Kamagata, Y.7
-
32
-
-
35948985557
-
Physiological ecology of Stenoxybacter acetivorans, an obligate microaerophile in termite guts
-
Wertz J.T., and Breznak J.A. Physiological ecology of Stenoxybacter acetivorans, an obligate microaerophile in termite guts. Appl Environ Microbiol 73 (2007) 6829-6841
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6829-6841
-
-
Wertz, J.T.1
Breznak, J.A.2
-
33
-
-
34247606048
-
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
-
Eichorst S.A., Breznak J.A., and Schmidt T.M. Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol 73 (2007) 2708-2717
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2708-2717
-
-
Eichorst, S.A.1
Breznak, J.A.2
Schmidt, T.M.3
-
34
-
-
35448948699
-
Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates
-
By using a diffusion chamber incubated in situ, rarely recovered groups from Deltaproteobacteria, Verrucomicrobia, Spirochaetes, and Acidobacteria were isolated.
-
Bollmann A., Lewis K., and Epstein S.S. Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Appl Environ Microbiol 73 (2007) 6386-6390. By using a diffusion chamber incubated in situ, rarely recovered groups from Deltaproteobacteria, Verrucomicrobia, Spirochaetes, and Acidobacteria were isolated.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6386-6390
-
-
Bollmann, A.1
Lewis, K.2
Epstein, S.S.3
-
36
-
-
49949110962
-
Cultivation of uncultured fastidious microbes
-
Kamagata Y., and Tamaki H. Cultivation of uncultured fastidious microbes. Microbes and Environments 20 (2005) 85-91
-
(2005)
Microbes and Environments
, vol.20
, pp. 85-91
-
-
Kamagata, Y.1
Tamaki, H.2
-
37
-
-
34447540346
-
Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I
-
Sakai S., Imachi H., Sekiguchi Y., Ohashi A., Harada H., and Kamagata Y. Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I. Appl Environ Microbiol 73 (2007) 4326-4331
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4326-4331
-
-
Sakai, S.1
Imachi, H.2
Sekiguchi, Y.3
Ohashi, A.4
Harada, H.5
Kamagata, Y.6
-
38
-
-
42049094195
-
Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen
-
Qiu Y.L., Hanada S., Ohashi A., Harada H., Kamagata Y., and Sekiguchi Y. Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen. Appl Environ Microbiol 74 (2008) 2051-2058
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2051-2058
-
-
Qiu, Y.L.1
Hanada, S.2
Ohashi, A.3
Harada, H.4
Kamagata, Y.5
Sekiguchi, Y.6
-
39
-
-
43049150726
-
Cultivation and ecosystem role of a marine roseobacter clade-affiliated cluster bacterium
-
Mayali X., Franks P.J., and Azam F. Cultivation and ecosystem role of a marine roseobacter clade-affiliated cluster bacterium. Appl Environ Microbiol 74 (2008) 2595-2603
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2595-2603
-
-
Mayali, X.1
Franks, P.J.2
Azam, F.3
-
40
-
-
49849097642
-
Development of a novel artificial medium based on utilization of algal photosynthetic metabolites by symbiotic heterotrophs
-
Watanabe K., Imase M., Aoyagi H., Ohmura N., Saiki H., and Tanaka H. Development of a novel artificial medium based on utilization of algal photosynthetic metabolites by symbiotic heterotrophs. J Appl Microbiol 105 (2008) 741-751
-
(2008)
J Appl Microbiol
, vol.105
, pp. 741-751
-
-
Watanabe, K.1
Imase, M.2
Aoyagi, H.3
Ohmura, N.4
Saiki, H.5
Tanaka, H.6
-
41
-
-
0007827869
-
Abundant microorganism in soil
-
Casida Jr. L.E. Abundant microorganism in soil. Appl Microbiol 13 (1965) 327-334
-
(1965)
Appl Microbiol
, vol.13
, pp. 327-334
-
-
Casida Jr., L.E.1
-
42
-
-
34547775666
-
Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site
-
Excellent example of high throughput dilution-to-extinction culturing yielding novel isolates from the globally abundant SAR11 group.
-
Stingl U., Tripp H.J., and Giovannoni S.J. Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J 1 (2007) 361-371. Excellent example of high throughput dilution-to-extinction culturing yielding novel isolates from the globally abundant SAR11 group.
-
(2007)
ISME J
, vol.1
, pp. 361-371
-
-
Stingl, U.1
Tripp, H.J.2
Giovannoni, S.J.3
-
43
-
-
0037043731
-
Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
-
Rappe M.S., Connon S.A., Vergin K.L., and Giovannoni S.J. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418 (2002) 630-633
-
(2002)
Nature
, vol.418
, pp. 630-633
-
-
Rappe, M.S.1
Connon, S.A.2
Vergin, K.L.3
Giovannoni, S.J.4
-
44
-
-
26844476654
-
Specific detection, isolation, and characterization of selected, previously uncultured members of the freshwater bacterioplankton community
-
Gich F., Schubert K., Bruns A., Hoffelner H., and Overmann J. Specific detection, isolation, and characterization of selected, previously uncultured members of the freshwater bacterioplankton community. Appl Environ Microbiol 71 (2005) 5908-5919
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5908-5919
-
-
Gich, F.1
Schubert, K.2
Bruns, A.3
Hoffelner, H.4
Overmann, J.5
-
45
-
-
22144493007
-
Analysis of microbial gene transcripts in environmental samples
-
Poretsky R.S., Bano N., Buchan A., LeCleir G., Kleikemper J., Pickering M., Pate W.M., Moran M.A., and Hollibaugh J.T. Analysis of microbial gene transcripts in environmental samples. Appl Environ Microbiol 71 (2005) 4121-4126
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4121-4126
-
-
Poretsky, R.S.1
Bano, N.2
Buchan, A.3
LeCleir, G.4
Kleikemper, J.5
Pickering, M.6
Pate, W.M.7
Moran, M.A.8
Hollibaugh, J.T.9
-
46
-
-
35948954757
-
Soil eukaryotic functional diversity, a metatranscriptomic approach
-
Bailly J., Fraissinet-Tachet L., Verner M.C., Debaud J.C., Lemaire M., Wesolowski-Louvel M., and Marmeisse R. Soil eukaryotic functional diversity, a metatranscriptomic approach. ISME J 1 (2007) 632-642
-
(2007)
ISME J
, vol.1
, pp. 632-642
-
-
Bailly, J.1
Fraissinet-Tachet, L.2
Verner, M.C.3
Debaud, J.C.4
Lemaire, M.5
Wesolowski-Louvel, M.6
Marmeisse, R.7
-
47
-
-
34547347640
-
Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
-
Benndorf D., Balcke G.U., Harms H., and von Bergen M. Functional metaproteome analysis of protein extracts from contaminated soil and groundwater. ISME J 1 (2007) 224-234
-
(2007)
ISME J
, vol.1
, pp. 224-234
-
-
Benndorf, D.1
Balcke, G.U.2
Harms, H.3
von Bergen, M.4
|