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Volumn 2, Issue 4, 2011, Pages 565-570

Single-molecule direct RNA sequencing without cDNA synthesis

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; RNA DIRECTED DNA POLYMERASE;

EID: 84857727947     PISSN: 17577004     EISSN: 17577012     Source Type: Journal    
DOI: 10.1002/wrna.84     Document Type: Article
Times cited : (46)

References (37)
  • 2
    • 0025820502 scopus 로고
    • Hybridization analyses of arrayed cDNA libraries.
    • Lennon GG, Lehrach H. Hybridization analyses of arrayed cDNA libraries. Trends Genet 1991, 7:314-317.
    • (1991) Trends Genet , vol.7 , pp. 314-317
    • Lennon, G.G.1    Lehrach, H.2
  • 3
    • 0026742791 scopus 로고
    • Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models.
    • Southern EM, Maskos U, Elder JK. Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models. Genomics 1992, 13:1008-1017.
    • (1992) Genomics , vol.13 , pp. 1008-1017
    • Southern, E.M.1    Maskos, U.2    Elder, J.K.3
  • 4
    • 69949159297 scopus 로고    scopus 로고
    • Pervasive transcription constitutes a new level of eukaryotic genome regulation.
    • Berretta J, Morillon A. Pervasive transcription constitutes a new level of eukaryotic genome regulation. EMBO Rep 2009, 10:973-982.
    • (2009) EMBO Rep , vol.10 , pp. 973-982
    • Berretta, J.1    Morillon, A.2
  • 5
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization.
    • Kapranov P, Willingham AT, Gingeras TR. Genome-wide transcription and the implications for genomic organization. Nat Rev Genet 2007, 8:413-423.
    • (2007) Nat Rev Genet , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 6
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-the next generation.
    • Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet 2010, 11:31-46.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 7
    • 70949102952 scopus 로고    scopus 로고
    • Next generation sequencing of microbial transcriptomes: challenges and opportunities.
    • van Vliet AH. Next generation sequencing of microbial transcriptomes: challenges and opportunities. FEMS Microbiol Lett 2010, 302:1-7.
    • (2010) FEMS Microbiol Lett , vol.302 , pp. 1-7
    • van Vliet, A.H.1
  • 8
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics.
    • Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10:57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 10
    • 0023066863 scopus 로고
    • Second-strand cDNA synthesis: mRNA fragments as primers.
    • Gubler U. Second-strand cDNA synthesis: mRNA fragments as primers. Methods Enzymol 1987, 152:330-335.
    • (1987) Methods Enzymol , vol.152 , pp. 330-335
    • Gubler, U.1
  • 12
    • 45849150615 scopus 로고    scopus 로고
    • Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.
    • Wu JQ, Du J, Rozowsky J, Zhang Z, Urban AE, Euskirchen G, Weissman S, Gerstein M, Snyder M. Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome. Genome Biol 2008, 9:R3.
    • (2008) Genome Biol , vol.9
    • Wu, J.Q.1    Du, J.2    Rozowsky, J.3    Zhang, Z.4    Urban, A.E.5    Euskirchen, G.6    Weissman, S.7    Gerstein, M.8    Snyder, M.9
  • 13
    • 36148972085 scopus 로고    scopus 로고
    • Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.
    • Perocchi F, Xu Z, Clauder-Munster S, Steinmetz LM. Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D. Nucleic Acids Res 2007, 35:e128.
    • (2007) Nucleic Acids Res , vol.35
    • Perocchi, F.1    Xu, Z.2    Clauder-Munster, S.3    Steinmetz, L.M.4
  • 17
    • 33746683274 scopus 로고    scopus 로고
    • Reverse transcriptase template switching and false alternative transcripts.
    • Cocquet J, Chong A, Zhang G, Veitia RA. Reverse transcriptase template switching and false alternative transcripts. Genomics 2006, 88:127-131.
    • (2006) Genomics , vol.88 , pp. 127-131
    • Cocquet, J.1    Chong, A.2    Zhang, G.3    Veitia, R.A.4
  • 18
    • 0035370892 scopus 로고    scopus 로고
    • Reverse transcriptase template switching during reverse transcriptase-polymerase chain reaction: artificial generation of deletions in ribonucleotide reductase mRNA.
    • Mader RM, Schmidt WM, Sedivy R, Rizovski B, Braun J, Kalipciyan M, Exner M, Steger GG, Mueller MW. Reverse transcriptase template switching during reverse transcriptase-polymerase chain reaction: artificial generation of deletions in ribonucleotide reductase mRNA. J Lab Clin Med 2001, 137:422-428.
    • (2001) J Lab Clin Med , vol.137 , pp. 422-428
    • Mader, R.M.1    Schmidt, W.M.2    Sedivy, R.3    Rizovski, B.4    Braun, J.5    Kalipciyan, M.6    Exner, M.7    Steger, G.G.8    Mueller, M.W.9
  • 19
    • 45549083628 scopus 로고    scopus 로고
    • When good transcripts go bad: artifactual RT-PCR 'splicing' and genome analysis.
    • Roy SW, Irimia M. When good transcripts go bad: artifactual RT-PCR 'splicing' and genome analysis. Bioessays 2008, 30:601-605.
    • (2008) Bioessays , vol.30 , pp. 601-605
    • Roy, S.W.1    Irimia, M.2
  • 20
  • 22
    • 77955883388 scopus 로고    scopus 로고
    • Biases in Illumina transcriptome sequencing caused by random hexamer priming.
    • Hansen KD, Brenner SE, Dudoit S. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 2010, 38:e131.
    • (2010) Nucleic Acids Res , vol.38
    • Hansen, K.D.1    Brenner, S.E.2    Dudoit, S.3
  • 24
    • 0032530098 scopus 로고    scopus 로고
    • Fidelity of DNA ligation: a novel experimental approach based on the polymerisation of libraries of oligonucleotides.
    • Housby JN, Southern EM. Fidelity of DNA ligation: a novel experimental approach based on the polymerisation of libraries of oligonucleotides. Nucleic Acids Res 1998, 26:4259-4266.
    • (1998) Nucleic Acids Res , vol.26 , pp. 4259-4266
    • Housby, J.N.1    Southern, E.M.2
  • 25
    • 63949083912 scopus 로고    scopus 로고
    • Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes.
    • Kozarewa I, Ning Z, Quail MA, Sanders MJ, Berriman M, Turner DJ. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods 2009, 6:291-295.
    • (2009) Nat Methods , vol.6 , pp. 291-295
    • Kozarewa, I.1    Ning, Z.2    Quail, M.A.3    Sanders, M.J.4    Berriman, M.5    Turner, D.J.6
  • 26
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36:e105.
    • (2008) Nucleic Acids Res , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 28
    • 65649126066 scopus 로고    scopus 로고
    • Transcript length bias in RNA-seq data confounds systems biology.
    • Oshlack A, Wakefield MJ. Transcript length bias in RNA-seq data confounds systems biology. Biol Direct 2009, 4:14.
    • (2009) Biol Direct , vol.4 , pp. 14
    • Oshlack, A.1    Wakefield, M.J.2
  • 29
  • 30
  • 32
    • 0037089139 scopus 로고    scopus 로고
    • Probabilistic prediction of Saccharomyces cerevisiae mRNA 3′-processing sites.
    • Graber JH, McAllister GD, Smith TF. Probabilistic prediction of Saccharomyces cerevisiae mRNA 3′-processing sites. Nucleic Acids Res 2002, 30:1851-1858.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1851-1858
    • Graber, J.H.1    McAllister, G.D.2    Smith, T.F.3
  • 33
    • 58149144383 scopus 로고    scopus 로고
    • Alternative polyadenylation: a twist on mRNA 3′ end formation.
    • Lutz CS. Alternative polyadenylation: a twist on mRNA 3′ end formation. ACS Chem Biol 2008, 3:609-617.
    • (2008) ACS Chem Biol , vol.3 , pp. 609-617
    • Lutz, C.S.1
  • 34
    • 13744254695 scopus 로고    scopus 로고
    • A large-scale analysis of mRNA polyadenylation of human and mouse genes.
    • Tian B, Hu J, Zhang H, Lutz CS. A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res 2005, 33:201-212.
    • (2005) Nucleic Acids Res , vol.33 , pp. 201-212
    • Tian, B.1    Hu, J.2    Zhang, H.3    Lutz, C.S.4
  • 35
  • 37


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.