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Volumn 113, Issue 30, 2016, Pages 8484-8489

Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates

Author keywords

Microdroplet; Multiple displacement amplification; Nanoliter volume; Single cell sequencing; Whole genome amplification

Indexed keywords

ARTICLE; COST EFFECTIVENESS ANALYSIS; GENE AMPLIFICATION; GENOME; GENOMICS; HIGH THROUGHPUT SEQUENCING; MULTIPLE DISPLACEMENT AMPLIFICATION; OVARIAN CANCER CELL LINE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SINGLE CELL ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; ALLELE; CELL LINE; COPY NUMBER VARIATION; GENETICS; HUMAN; HUMAN GENOME; NUCLEIC ACID AMPLIFICATION; PROCEDURES; REPRODUCIBILITY; TUMOR CELL LINE;

EID: 84979547050     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1520964113     Document Type: Article
Times cited : (43)

References (29)
  • 1
    • 79953766940 scopus 로고    scopus 로고
    • Tumour evolution inferred by single-cell sequencing
    • Navin N, et al. (2011) Tumour evolution inferred by single-cell sequencing. Nature 472(7341):90-94.
    • (2011) Nature , vol.472 , Issue.7341 , pp. 90-94
    • Navin, N.1
  • 2
    • 84919372228 scopus 로고    scopus 로고
    • Dissecting the clonal origins of childhood acute lymphoblastic leukemia by single-cell genomics
    • Gawad C, Koh W, Quake SR (2014) Dissecting the clonal origins of childhood acute lymphoblastic leukemia by single-cell genomics. Proc Natl Acad Sci USA 111(50): 17947-17952.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.50 , pp. 17947-17952
    • Gawad, C.1    Koh, W.2    Quake, S.R.3
  • 3
    • 84863229772 scopus 로고    scopus 로고
    • Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm
    • Hou Y, et al. (2012) Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 148(5):873-885.
    • (2012) Cell , vol.148 , Issue.5 , pp. 873-885
    • Hou, Y.1
  • 4
    • 84906238686 scopus 로고    scopus 로고
    • Clonal evolution in breast cancer revealed by single nucleus genome sequencing
    • Wang Y, et al. (2014) Clonal evolution in breast cancer revealed by single nucleus genome sequencing. Nature 512(7513):155-160.
    • (2014) Nature , vol.512 , Issue.7513 , pp. 155-160
    • Wang, Y.1
  • 5
    • 84900333051 scopus 로고    scopus 로고
    • Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer
    • Lohr JG, et al. (2014) Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer. Nat Biotechnol 32(5):479-484.
    • (2014) Nat Biotechnol , vol.32 , Issue.5 , pp. 479-484
    • Lohr, J.G.1
  • 6
    • 84887315590 scopus 로고    scopus 로고
    • Mosaic copy number variation in human neurons
    • McConnell MJ, et al. (2013) Mosaic copy number variation in human neurons. Science 342(6158):632-637.
    • (2013) Science , vol.342 , Issue.6158 , pp. 632-637
    • McConnell, M.J.1
  • 7
    • 84864258558 scopus 로고    scopus 로고
    • Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm
    • Wang J, Fan HC, Behr B, Quake SR (2012) Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm. Cell 150(2): 402-412.
    • (2012) Cell , vol.150 , Issue.2 , pp. 402-412
    • Wang, J.1    Fan, H.C.2    Behr, B.3    Quake, S.R.4
  • 8
    • 84871447495 scopus 로고    scopus 로고
    • Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing
    • Lu S, et al. (2012) Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing. Science 338(6114):1627-1630.
    • (2012) Science , vol.338 , Issue.6114 , pp. 1627-1630
    • Lu, S.1
  • 9
    • 84899932270 scopus 로고    scopus 로고
    • Development and validation of a next-generation sequencing based protocol for 24-chromosome aneuploidy screening of embryos
    • Fiorentino F, et al. (2014) Development and validation of a next-generation sequencing based protocol for 24-chromosome aneuploidy screening of embryos. Fertil Steril 101(5): 1375-1382.
    • (2014) Fertil Steril , vol.101 , Issue.5 , pp. 1375-1382
    • Fiorentino, F.1
  • 10
    • 84920645442 scopus 로고    scopus 로고
    • A quantitative comparison of single-cell whole genome amplification methods
    • de Bourcy CFA, et al. (2014) A quantitative comparison of single-cell whole genome amplification methods. PLoS One 9(8):e105585.
    • (2014) PLoS One , vol.9 , Issue.8 , pp. e105585
    • De Bourcy, C.F.A.1
  • 11
    • 84979520403 scopus 로고    scopus 로고
    • Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing
    • Hou Y, et al. (2015) Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing. Gigascience 4(1):37.
    • (2015) Gigascience , vol.4 , Issue.1 , pp. 37
    • Hou, Y.1
  • 12
    • 84929658867 scopus 로고    scopus 로고
    • Optimizing sparse sequencing of single cells for highly multiplex copy number profiling
    • Baslan T, et al. (2015) Optimizing sparse sequencing of single cells for highly multiplex copy number profiling. Genome Res 25(5):714-724.
    • (2015) Genome Res , vol.25 , Issue.5 , pp. 714-724
    • Baslan, T.1
  • 13
    • 84861212790 scopus 로고    scopus 로고
    • A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
    • Leung K, et al. (2012) A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities. Proc Natl Acad Sci USA 109(20):7665-7670.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.20 , pp. 7665-7670
    • Leung, K.1
  • 14
    • 84880213158 scopus 로고    scopus 로고
    • Single-cell paired-end genome sequencing reveals structural variation per cell cycle
    • Voet T, et al. (2013) Single-cell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Res 41(12):6119-6138.
    • (2013) Nucleic Acids Res , vol.41 , Issue.12 , pp. 6119-6138
    • Voet, T.1
  • 15
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
    • Zong C, Lu S, Chapman AR, Xie XS (2012) Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338(6114):1622-1626.
    • (2012) Science , vol.338 , Issue.6114 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4
  • 16
    • 34848895943 scopus 로고    scopus 로고
    • Nanoliter reactors improve multiple displacement amplification of genomes from single cells
    • Marcy Y, et al. (2007) Nanoliter reactors improve multiple displacement amplification of genomes from single cells. PLoS Genet 3(9):1702-1708.
    • (2007) PLoS Genet , vol.3 , Issue.9 , pp. 1702-1708
    • Marcy, Y.1
  • 17
    • 84890055556 scopus 로고    scopus 로고
    • Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells
    • Gole J, et al. (2013) Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells. Nat Biotechnol 31(12):1126-1132.
    • (2013) Nat Biotechnol , vol.31 , Issue.12 , pp. 1126-1132
    • Gole, J.1
  • 18
    • 84926383372 scopus 로고    scopus 로고
    • Printing 2-dimentional droplet array for single-cell reverse- Transcription quantitative PCR assay with a microfluidic robot
    • Zhu Y, et al. (2015) Printing 2-dimentional droplet array for single-cell reverse- Transcription quantitative PCR assay with a microfluidic robot. Sci Rep 5:9551.
    • (2015) Sci Rep , vol.5 , pp. 9551
    • Zhu, Y.1
  • 19
    • 24744443338 scopus 로고    scopus 로고
    • Genomic instability of human mammary epithelial cells overexpressing a truncated form of EMSY
    • Raouf A, et al. (2005) Genomic instability of human mammary epithelial cells overexpressing a truncated form of EMSY. J Natl Cancer Inst 97(17):1302-1306.
    • (2005) J Natl Cancer Inst , vol.97 , Issue.17 , pp. 1302-1306
    • Raouf, A.1
  • 20
    • 84867164956 scopus 로고    scopus 로고
    • Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triplenegative breast cancer
    • Ha G, et al. (2012) Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triplenegative breast cancer. Genome Res 22(10):1995-2007.
    • (2012) Genome Res , vol.22 , Issue.10 , pp. 1995-2007
    • Ha, G.1
  • 21
    • 84942874388 scopus 로고    scopus 로고
    • Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification
    • Fu Y, et al. (2015) Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification. Proc Natl Acad Sci USA 112(38):11923-11928.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.38 , pp. 11923-11928
    • Fu, Y.1
  • 22
    • 84943170018 scopus 로고    scopus 로고
    • Single-cell genetic analysis using automated microfluidics to resolve somatic mosaicism
    • Szulwach KE, et al. (2015) Single-cell genetic analysis using automated microfluidics to resolve somatic mosaicism. PLoS One 10(8):e0135007.
    • (2015) PLoS One , vol.10 , Issue.8 , pp. e0135007
    • Szulwach, K.E.1
  • 23
    • 84928027333 scopus 로고    scopus 로고
    • Calibrating genomic and allelic coverage bias in single-cell sequencing
    • Zhang C-Z, et al. (2015) Calibrating genomic and allelic coverage bias in single-cell sequencing. Nat Commun 6:6822.
    • (2015) Nat Commun , vol.6 , pp. 6822
    • Zhang, C.-Z.1
  • 24
    • 84930178333 scopus 로고    scopus 로고
    • G&T-seq: Parallel sequencing of single-cell genomes and transcriptomes
    • Macaulay IC, et al. (2015) G&T-seq: Parallel sequencing of single-cell genomes and transcriptomes. Nat Methods 12(6):519-522.
    • (2015) Nat Methods , vol.12 , Issue.6 , pp. 519-522
    • Macaulay, I.C.1
  • 25
    • 84865411837 scopus 로고    scopus 로고
    • Derivation and characterization of matched cell lines from primary and recurrent serous ovarian cancer
    • Létourneau IJ, et al. (2012) Derivation and characterization of matched cell lines from primary and recurrent serous ovarian cancer. BMC Cancer 12(1):379.
    • (2012) BMC Cancer , vol.12 , Issue.1 , pp. 379
    • Létourneau, I.J.1
  • 26
    • 84925229458 scopus 로고    scopus 로고
    • Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
    • Eirew P, et al. (2015) Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution. Nature 518(7539):422-426.
    • (2015) Nature , vol.518 , Issue.7539 , pp. 422-426
    • Eirew, P.1
  • 27
    • 84897954204 scopus 로고    scopus 로고
    • PyClone: Statistical inference of clonal population structure in cancer
    • Roth A, et al. (2014) PyClone: Statistical inference of clonal population structure in cancer. Nat Methods 11(4):396-398.
    • (2014) Nat Methods , vol.11 , Issue.4 , pp. 396-398
    • Roth, A.1
  • 28
    • 84856080112 scopus 로고    scopus 로고
    • Feature-based classifiers for somatic mutation detection in tumournormal paired sequencing data
    • Ding J, et al. (2012) Feature-based classifiers for somatic mutation detection in tumournormal paired sequencing data. Bioinformatics 28(2):167-175.
    • (2012) Bioinformatics , vol.28 , Issue.2 , pp. 167-175
    • Ding, J.1
  • 29
    • 84885092663 scopus 로고    scopus 로고
    • Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling
    • Bashashati A, et al. (2013) Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling. J Pathol 231(1): 21-34.
    • (2013) J Pathol , vol.231 , Issue.1 , pp. 21-34
    • Bashashati, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.