Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing

GigaScience

Volumn 4, Issue 1, 2015, Pages

  Hou, Yong ^a   Wu, Kui ^a   Shi, Xulian ^a,b   Li, Fuqiang ^a   Song, Luting ^a   Wu, Hanjie ^a   Dean, Michael ^c   Li, Guibo ^a   Tsang, Shirley ^d   Jiang, Runze ^a   Zhang, Xiaolong ^a,e   Li, Bo ^a   Liu, Geng ^a   Bedekar, Niharika ^f   Lu, Na ^a,b   Xie, Guoyun ^a   Liang, Han ^a   Chang, Liao ^a   Wang, Ting ^g   Chen, Jianghao ^g   Li, Yingrui ^a   Zhang, Xiuqing ^a   Yang, Huanming ^a,h,i   Xu, Xun ^a   Wang, Ling ^g   Wang, Jun ^a,h,j   more..

^a BGI SHENZHEN   (China)

^b SOUTHEAST UNIVERSITY   (China)

^c NATIONAL CANCER INSTITUTE   (United States)

^d Biomatrix   (United States)

^e UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^f STANFORD UNIVERSITY   (United States)

^g FOURTH MILITARY MEDICAL UNIVERSITY   (China)

^h KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

ⁱ ZHEJIANG UNIVERSITY   (China)

^j Capital Region   (Denmark)

more..

Author keywords

DOP PCR; MALBAC; MDA; Next generation sequencing; Single cell resequencing; Variations detection; Whole genome amplification

Indexed keywords

GENOMIC DNA; JANUS KINASE 2; PROGRAMMED DEATH 1 LIGAND 1; PROGRAMMED DEATH 1 LIGAND 2;

ARTICLE; CD274 GENE; CHROMOSOME 12P; CHROMOSOME 9P; CONTROLLED STUDY; COPY NUMBER VARIATION; DEGENERATE OLIGONUCLEOTIDE PRIMED POLYMERASE CHAIN REACTION; DNA SEQUENCE; FALSE POSITIVE RESULT; GASTRIC CANCER CELL LINE; GENE AMPLIFICATION; HUMAN; HUMAN CELL; INTERMETHOD COMPARISON; JAK2 GENE; MEASUREMENT ACCURACY; MULTIPLE ANNEALING AND LOOPING BASED AMPLIFICATION CYCLE; MULTIPLE DISPLACEMENT AMPLIFICATION; ONCOGENE K RAS; PDCD1LG2 GENE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; SINGLE CELL ANALYSIS; SINGLE CELL RESEQUENCING; STOMACH CANCER; WHOLE GENOME AMPLIFICATION; COMPARATIVE STUDY; GENETICS; GENOME;

DNA COPY NUMBER VARIATIONS; GENOME; SINGLE-CELL ANALYSIS;

EID: 84979520403     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1186/s13742-015-0068-3     Document Type: Article

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