-
1
-
-
0030821294
-
Carbon, nitrogen, and carbohydrate fluxes during the production of particulate and dissolved organic matter by phytoplankton
-
Biddanda B, Benner R, (1997) Carbon, nitrogen, and carbohydrate fluxes during the production of particulate and dissolved organic matter by phytoplankton. Limnol Oceanogr 42: 506-518.
-
(1997)
Limnol Oceanogr
, vol.42
, pp. 506-518
-
-
Biddanda, B.1
Benner, R.2
-
2
-
-
79951588928
-
Microbial extracellular enzymes and the marine carbon cycle
-
Arnosti C, (2011) Microbial extracellular enzymes and the marine carbon cycle. Ann Rev Mar Sci 3: 401-425.
-
(2011)
Ann Rev Mar Sci
, vol.3
, pp. 401-425
-
-
Arnosti, C.1
-
3
-
-
49649106060
-
Genomics of cellulosic biofuels
-
Rubin EM, (2008) Genomics of cellulosic biofuels. Nature 454: 841-845.
-
(2008)
Nature
, vol.454
, pp. 841-845
-
-
Rubin, E.M.1
-
4
-
-
79955912342
-
Microalgae bioengineering: From CO2 fixation to biofuel production. Renew Sust Energ
-
Zeng X, Danquah MK, Chen XD, Lu Y, (2011) Microalgae bioengineering: From CO2 fixation to biofuel production. Renew Sust Energ. Rev 15: 3252-3260.
-
(2011)
Rev
, vol.15
, pp. 3252-3260
-
-
Zeng, X.1
Danquah, M.K.2
Chen, X.D.3
Lu, Y.4
-
5
-
-
38749113965
-
Addressing the need for alternative transportation fuels: The Joint BioEnergy Institute
-
Blanch HW, Adams PD, Andrews-Cramer KM, Frommer WB, Simmons BA, et al. (2008) Addressing the need for alternative transportation fuels: The Joint BioEnergy Institute. ACS Chemical Biology 3: 17-20.
-
(2008)
ACS Chemical Biology
, vol.3
, pp. 17-20
-
-
Blanch, H.W.1
Adams, P.D.2
Andrews-Cramer, K.M.3
Frommer, W.B.4
Simmons, B.A.5
-
7
-
-
0034068899
-
Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
-
Cottrell MT, Kirchman DL, (2000) Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66: 1692-1697.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1692-1697
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
8
-
-
77957093212
-
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
-
Pope PB, Denman SE, Jones M, Tringe SG, Barry K, et al. (2010) Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proc Natl Acad Sci USA 107: 14793-14798.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14793-14798
-
-
Pope, P.B.1
Denman, S.E.2
Jones, M.3
Tringe, S.G.4
Barry, K.5
-
9
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc JM, Antonopoulos DA, Berg Miller ME, Wilson MK, Yannarell AC, et al. (2009) Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci USA 106: 1948-1953.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Berg Miller, M.E.3
Wilson, M.K.4
Yannarell, A.C.5
-
10
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, et al. (2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331: 463-467.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.W.4
Chokhawala, H.5
-
11
-
-
0038445720
-
Fluorescent derivatization of polysaccharides and carbohydrate-containing biopolymers for measurement of enzyme activities in complex media
-
Arnosti C, (2003) Fluorescent derivatization of polysaccharides and carbohydrate-containing biopolymers for measurement of enzyme activities in complex media. J Chromatogr B 793: 181-191.
-
(2003)
J Chromatogr B
, vol.793
, pp. 181-191
-
-
Arnosti, C.1
-
12
-
-
0002663012
-
The plant, algal and microbial polysaccharides
-
In: Kennedy JF, editors, Oxford, Clarendon Press
-
Kennedy JF, White CA, (1988) The plant, algal and microbial polysaccharides. In: Kennedy JF, editors. Carbohydrate chemistry Oxford Clarendon Press pp. 220-262.
-
(1988)
Carbohydrate Chemistry
, pp. 220-262
-
-
Kennedy, J.F.1
White, C.A.2
-
13
-
-
33845671315
-
Characterization of marine bacteria and the activity of their enzyme systems involved in degradation of the algal storage glucan laminarin
-
Alderkamp AC, Van Rijssel M, Bolhuis H, (2007) Characterization of marine bacteria and the activity of their enzyme systems involved in degradation of the algal storage glucan laminarin. FEMS Microbiol Ecol 59: 108-117.
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 108-117
-
-
Alderkamp, A.C.1
van Rijssel, M.2
Bolhuis, H.3
-
14
-
-
20444418081
-
Genomic DNA amplification from a single bacterium
-
Raghunathan A, Ferguson HR, Bornarth CJ, Song WM, Driscoll M, et al. (2005) Genomic DNA amplification from a single bacterium. Appl Environ Microbiol 71: 3342-3347.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3342-3347
-
-
Raghunathan, A.1
Ferguson, H.R.2
Bornarth, C.J.3
Song, W.M.4
Driscoll, M.5
-
15
-
-
34547492897
-
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time
-
Stepanauskas R, Sieracki ME, (2007) Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time. Proc Natl Acad Sci USA 104: 9052-9057.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 9052-9057
-
-
Stepanauskas, R.1
Sieracki, M.E.2
-
16
-
-
80052479893
-
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
-
Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, et al. (2011) Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333: 1296-1300.
-
(2011)
Science
, vol.333
, pp. 1296-1300
-
-
Swan, B.K.1
Martinez-Garcia, M.2
Preston, C.M.3
Sczyrba, A.4
Woyke, T.5
-
17
-
-
84355163060
-
High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
-
doi: 10.1038/ismej.2011.84
-
Martinez-Garcia M, Swan BK, Poulton NJ, Lluesma Gomez M, Masland D, et al. (2011) High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J doi:10.1038/ismej.2011.84.
-
(2011)
ISME J
-
-
Martinez-Garcia, M.1
Swan, B.K.2
Poulton, N.J.3
Lluesma Gomez, M.4
Masland, D.5
-
18
-
-
84857121184
-
Unveiling in situ interactions between marine protists and bacteria trough single cell sequencing
-
doi: 10.1038/ismej.2011.126
-
Martinez-Garcia M, Brazel D, Poulton NJ, Swan BK, Lluesma Gomez M, et al. (2011) Unveiling in situ interactions between marine protists and bacteria trough single cell sequencing. ISME J doi:10.1038/ismej.2011.126.
-
(2011)
ISME J
-
-
Martinez-Garcia, M.1
Brazel, D.2
Poulton, N.J.3
Swan, B.K.4
Lluesma Gomez, M.5
-
19
-
-
84891283485
-
Bacterial and archaeal community structure and its patterns
-
In: Kirchman DL, editors, Hoboken, New Jersey, John Wiley & Sons, Inc
-
Fuhrman JA, Hagstrom A, (2008) Bacterial and archaeal community structure and its patterns. In: Kirchman DL, editors. Microbial ecology of the oceans Hoboken, New Jersey John Wiley & Sons, Inc.
-
(2008)
Microbial Ecology of the Oceans
-
-
Fuhrman, J.A.1
Hagstrom, A.2
-
20
-
-
0037178021
-
Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
-
Zwart G, Crump BC, Agterveld MPK-v, Hagen F, Han S-K, (2002) Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28: 141-155.
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 141-155
-
-
Zwart, G.1
Crump, B.C.2
Agterveld, M.P.K.-V.3
Hagen, F.4
Han, S.-K.5
-
21
-
-
0032976005
-
Flow cytometric analysis of 5-cyano-2,3-ditolyl tetrazolium chloride activity of marine bacterioplankton in dilution cultures
-
Sieracki ME, Cucci TL, Nicinski J, (1999) Flow cytometric analysis of 5-cyano-2,3-ditolyl tetrazolium chloride activity of marine bacterioplankton in dilution cultures. Appl Environ Microbiol 65: 2409-2417.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2409-2417
-
-
Sieracki, M.E.1
Cucci, T.L.2
Nicinski, J.3
-
22
-
-
33847156414
-
Cytometric evidence reconciling the toxicity and usefulness of CTC as a marker of bacterial activity
-
Gasol JM, Aristegui J, (2007) Cytometric evidence reconciling the toxicity and usefulness of CTC as a marker of bacterial activity. Aquat Microb Ecol 46: 71-83.
-
(2007)
Aquat Microb Ecol
, vol.46
, pp. 71-83
-
-
Gasol, J.M.1
Aristegui, J.2
-
23
-
-
0037346720
-
A comparative study of carboxyfluorescein diacetate and carboxyfluorescein diacetate succinimidyl ester as indicators of bacterial activity
-
Hoefel D, Grooby WL, Monis PT, Andrews S, Saint CPv, (2003) A comparative study of carboxyfluorescein diacetate and carboxyfluorescein diacetate succinimidyl ester as indicators of bacterial activity. J Microbiol Meth 52: 379-388.
-
(2003)
J Microbiol Meth
, vol.52
, pp. 379-388
-
-
Hoefel, D.1
Grooby, W.L.2
Monis, P.T.3
Andrews, S.4
Saint, C.P.V.5
-
24
-
-
0029958586
-
Toxic effects on bacterial metabolism of the redox dye 5-cyano-2,3-ditolyl tetrazolium chloride
-
Ullrich S, Karrasch B, Hoppe HG, Jeskulke K, Mehrens M, (1996) Toxic effects on bacterial metabolism of the redox dye 5-cyano-2,3-ditolyl tetrazolium chloride. Appl Environ Microbiol 62: 4587-4593.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 4587-4593
-
-
Ullrich, S.1
Karrasch, B.2
Hoppe, H.G.3
Jeskulke, K.4
Mehrens, M.5
-
25
-
-
0026331041
-
Molecular architecture and electrostatic properties of a bacterial porin
-
Weiss M, Abele U, Weckesser J, Welte W, Schiltz E, et al. (1991) Molecular architecture and electrostatic properties of a bacterial porin. Science 254: 1627-1630.
-
(1991)
Science
, vol.254
, pp. 1627-1630
-
-
Weiss, M.1
Abele, U.2
Weckesser, J.3
Welte, W.4
Schiltz, E.5
-
26
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): An expert resource for glycogenomics
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, et al. (2009) The Carbohydrate-Active EnZymes database (CAZy): An expert resource for glycogenomics. Nucleic Acid Res 37: D233-D238.
-
(2009)
Nucleic Acid Res
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
-
27
-
-
0037478650
-
Complete genome sequence of the marine planctomycete Pirellula sp. strain 1
-
Glöckner FO, Kube M, Bauer M, Teeling H, Lombardot T, et al. (2003) Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc Natl Acad Sci USA 100: 8298-8303.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8298-8303
-
-
Glöckner, F.O.1
Kube, M.2
Bauer, M.3
Teeling, H.4
Lombardot, T.5
-
28
-
-
38549096018
-
MEROPS: The peptidase database
-
Rawlings ND, Morton FR, Kok CY, Kong J, Barrett AJ, (2008) MEROPS: The peptidase database. Nucleic Acid Res 36: D320-D325.
-
(2008)
Nucleic Acid Res
, vol.36
-
-
Rawlings, N.D.1
Morton, F.R.2
Kok, C.Y.3
Kong, J.4
Barrett, A.J.5
-
29
-
-
44949095321
-
Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40T
-
Weiner RM, Taylor LE Ii, Henrissat B, Hauser L, Land M, et al. (2008) Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40T. PLoS Genet 4.
-
(2008)
PLoS Genet
, vol.4
-
-
Weiner, R.M.1
Taylor Ii., L.E.2
Henrissat, B.3
Hauser, L.4
Land, M.5
-
30
-
-
77950919873
-
Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake
-
Arnds J, Knittel K, Buck U, Winkel M, Amann R, (2010) Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake. Syst Appl Microbiol 33: 139-148.
-
(2010)
Syst Appl Microbiol
, vol.33
, pp. 139-148
-
-
Arnds, J.1
Knittel, K.2
Buck, U.3
Winkel, M.4
Amann, R.5
-
31
-
-
0035019465
-
Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil
-
Buckley DH, Schmidt TM, (2001) Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil. FEMS Microbiol Ecol 35: 105-112.
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 105-112
-
-
Buckley, D.H.1
Schmidt, T.M.2
-
32
-
-
5444248493
-
Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium
-
Derrien M, Vaughan EE, Plugge CM, de Vos WM, (2004) Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. IJSEM 54: 1469-1476.
-
(2004)
IJSEM
, vol.54
, pp. 1469-1476
-
-
Derrien, M.1
Vaughan, E.E.2
Plugge, C.M.3
de Vos, W.M.4
-
33
-
-
84863990411
-
Global distribution and diversity of marine Verrucomicrobia
-
Freitas S, Hatosy S, Fuhrman JA, Huse SM, Mark Welch DB, et al. (2012) Global distribution and diversity of marine Verrucomicrobia. ISME Journal, advance online publication.
-
(2012)
ISME Journal, Advance Online Publication
-
-
Freitas, S.1
Hatosy, S.2
Fuhrman, J.A.3
Huse, S.M.4
Mark Welch, D.B.5
-
34
-
-
33749031836
-
Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum 'Verrucomicrobia', isolated from a sponge (Porifera)
-
Scheuermayer M, Gulder TAM, Bringmann G, Hentschel U, (2006) Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum 'Verrucomicrobia', isolated from a sponge (Porifera). IJSEM 56: 2119-2124.
-
(2006)
IJSEM
, vol.56
, pp. 2119-2124
-
-
Scheuermayer, M.1
Gulder, T.A.M.2
Bringmann, G.3
Hentschel, U.4
-
35
-
-
57449087986
-
Bacteria associated with benthic diatoms from Lake Constance: phylogeny and influences on diatom growth and secretion of extracellular polymeric substances
-
Bruckner CG, Bahulikar R, Rahalkar M, Schink B, Kroth PG, (2008) Bacteria associated with benthic diatoms from Lake Constance: phylogeny and influences on diatom growth and secretion of extracellular polymeric substances. Appl Environ Microbiol 74: 7740-7749.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 7740-7749
-
-
Bruckner, C.G.1
Bahulikar, R.2
Rahalkar, M.3
Schink, B.4
Kroth, P.G.5
-
36
-
-
0034652128
-
Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia
-
Petroni G, Spring S, Schleifer K-H, Verni F, Rosati G, (2000) Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia. Proc Natl Acad Sci USA 97: 1813-1817.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 1813-1817
-
-
Petroni, G.1
Spring, S.2
Schleifer, K.-H.3
Verni, F.4
Rosati, G.5
-
37
-
-
0032752386
-
Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms
-
Chin K-J, hahn D, Hengstmann U, Liesack W, Janssen PH, (1999) Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms. Appl Environ Microbiol 65: 5042-5049.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 5042-5049
-
-
Chin, K.-J.1
Hahn, D.2
Hengstmann, U.3
Liesack, W.4
Janssen, P.H.5
-
38
-
-
4744368323
-
Carbohydrate-binding modules: Fine-tuning polysaccharide recognition
-
Boraston AB, Bolam DN, Gilbert HJ, Davies GJ, (2004) Carbohydrate-binding modules: Fine-tuning polysaccharide recognition. Biochemical Journal 382: 769-781.
-
(2004)
Biochemical Journal
, vol.382
, pp. 769-781
-
-
Boraston, A.B.1
Bolam, D.N.2
Gilbert, H.J.3
Davies, G.J.4
-
39
-
-
4143139469
-
The cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides
-
Bayer EA, Belaich JP, Shoham Y, Lamed R, (2004) The cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides. Ann Rev Microbiol 58: 521-554.
-
(2004)
Ann Rev Microbiol
, vol.58
, pp. 521-554
-
-
Bayer, E.A.1
Belaich, J.P.2
Shoham, Y.3
Lamed, R.4
-
40
-
-
0029472304
-
Measurement of depth- and site-related differences in polysaccharide hydrolysis rates in marine sediments
-
Arnosti C, (1995) Measurement of depth- and site-related differences in polysaccharide hydrolysis rates in marine sediments. Geochim Cosmochim Ac 59: 4247-4257.
-
(1995)
Geochim Cosmochim Ac
, vol.59
, pp. 4247-4257
-
-
Arnosti, C.1
-
41
-
-
0030392465
-
A new method for measuring polysaccharide hydrolysis rates in marine environments
-
Arnosti C, (1996) A new method for measuring polysaccharide hydrolysis rates in marine environments. Org Geochem 25: 105-115.
-
(1996)
Org Geochem
, vol.25
, pp. 105-115
-
-
Arnosti, C.1
-
42
-
-
34547490072
-
Automated isolation techniques for microalgae
-
In: Andersen R, editors, New York, Elsevier Academic
-
Sieracki M, Poulton N, Crosbie N, (2005) Automated isolation techniques for microalgae. In: Andersen R, editors. Algal Culturing Techniques New York Elsevier Academic pp. 101-116.
-
(2005)
Algal Culturing Techniques
, pp. 101-116
-
-
Sieracki, M.1
Poulton, N.2
Crosbie, N.3
-
43
-
-
18344396798
-
Comprehensive human genome amplification using multiple displacement amplification
-
Dean FB, Hosono S, Fang LH, Wu XH, Faruqi AF, et al. (2002) Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA 99: 5261-5266.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5261-5266
-
-
Dean, F.B.1
Hosono, S.2
Fang, L.H.3
Wu, X.H.4
Faruqi, A.F.5
-
44
-
-
80054791084
-
Decontamination of MDA reagents for single cell whole genome amplification
-
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, et al. (2011) Decontamination of MDA reagents for single cell whole genome amplification. PLoS ONE 10: e26161.
-
(2011)
PLoS ONE
, vol.10
-
-
Woyke, T.1
Sczyrba, A.2
Lee, J.3
Rinke, C.4
Tighe, D.5
-
45
-
-
33745085561
-
Sequencing genomes from single cells by polymerase cloning
-
Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, et al. (2006) Sequencing genomes from single cells by polymerase cloning. Nat Biotechnol 24: 680-686.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 680-686
-
-
Zhang, K.1
Martiny, A.C.2
Reppas, N.B.3
Barry, K.W.4
Malek, J.5
-
46
-
-
17544390961
-
Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: Comparison by microscopy and denaturing gradient gel electrophoresis
-
Casamayor EO, Schaefer H, Baneras L, Pedros-Alio C, Muyzer G, (2000) Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: Comparison by microscopy and denaturing gradient gel electrophoresis. Appl Environ Microbiol 66: 499-508.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 499-508
-
-
Casamayor, E.O.1
Schaefer, H.2
Baneras, L.3
Pedros-Alio, C.4
Muyzer, G.5
-
47
-
-
0001857117
-
16S/23S rRNA sequencing
-
In: Stackebrandt E, Goodfellow M, editors, Chichester, UK, John Wiley
-
Lane DJ, (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, editors. Nucleic acid techniques in bacterial systematics Chichester, UK John Wiley.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
-
-
Lane, D.J.1
-
48
-
-
65449134335
-
Assembling the marine metagenome, one cell at a time
-
Woyke T, Xie G, Copeland A, Gonzalez JM, Han C, et al. (2009) Assembling the marine metagenome, one cell at a time. PLoS ONE 4: e5299.
-
(2009)
PLoS ONE
, vol.4
-
-
Woyke, T.1
Xie, G.2
Copeland, A.3
Gonzalez, J.M.4
Han, C.5
-
49
-
-
79953024059
-
Capturing diversity of marine heterotrophic protists: one cell at a time
-
Heywood JL, Sieracki ME, Bellows W, Poulton NJ, Stepanauskas R, (2011) Capturing diversity of marine heterotrophic protists: one cell at a time. ISME J 5: 674-684.
-
(2011)
ISME J
, vol.5
, pp. 674-684
-
-
Heywood, J.L.1
Sieracki, M.E.2
Bellows, W.3
Poulton, N.J.4
Stepanauskas, R.5
-
50
-
-
79952757641
-
What's New Is Old: Resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH
-
Fleming EJ, Langdon AE, Martinez-Garcia M, Stepanauskas R, Poulton NJ, et al. (2011) What's New Is Old: Resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS ONE 6: e17769.
-
(2011)
PLoS ONE
, vol.6
-
-
Fleming, E.J.1
Langdon, A.E.2
Martinez-Garcia, M.3
Stepanauskas, R.4
Poulton, N.J.5
-
51
-
-
79955787125
-
Single-cell genomics reveals organismal interactions in uncultivated marine protists
-
Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, et al. (2011) Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science 332: 714-717.
-
(2011)
Science
, vol.332
, pp. 714-717
-
-
Yoon, H.S.1
Price, D.C.2
Stepanauskas, R.3
Rajah, V.D.4
Sieracki, M.E.5
-
52
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, et al. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acid Res 35: 7188-7196.
-
(2007)
Nucleic Acid Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
-
53
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
54
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, et al. (2004) ARB: a software environment for sequence data. Nucleic Acid Res 32: 1363-1371.
-
(2004)
Nucleic Acid Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
-
55
-
-
73449128271
-
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C, Knight R, (2009) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
-
(2009)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
56
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E, (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
57
-
-
23144452801
-
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
-
Besemer J, Borodovsky M, (2005) GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acid Res 33: W451-W454.
-
(2005)
Nucleic Acid Res
, vol.33
-
-
Besemer, J.1
Borodovsky, M.2
-
58
-
-
78149297086
-
CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database
-
Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC, (2010) CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 20: 1574-1584.
-
(2010)
Glycobiology
, vol.20
, pp. 1574-1584
-
-
Park, B.H.1
Karpinets, T.V.2
Syed, M.H.3
Leuze, M.R.4
Uberbacher, E.C.5
-
59
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, et al. (2010) CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acid Res 39: D225-D229.
-
(2010)
Nucleic Acid Res
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
-
60
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T, (2009) The SWISS-MODEL Repository and associated resources. Nucleic Acid Res 37: D387-D392.
-
(2009)
Nucleic Acid Res
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Künzli, M.3
Bordoli, L.4
Schwede, T.5
-
61
-
-
75549087533
-
PROSITE, a protein domain database for functional characterization and annotation
-
Sigrist CJA, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, et al. (2010) PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acid Res 38: D161-D166.
-
(2010)
Nucleic Acid Res
, vol.38
-
-
Sigrist, C.J.A.1
Cerutti, L.2
de Castro, E.3
Langendijk-Genevaux, P.S.4
Bulliard, V.5
-
62
-
-
75549083619
-
The integrated microbial genomes system: An expanding comparative analysis resource
-
Markowitz VM, Chen IA, Palaniappan K, Chu K, Szeto E, et al. (2010) The integrated microbial genomes system: An expanding comparative analysis resource. Nucleic Acids Research 38: D382-D390.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Markowitz, V.M.1
Chen, I.A.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
-
63
-
-
33846555715
-
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
-
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, et al. (2007) DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. IJSEM 57: 81-91.
-
(2007)
IJSEM
, vol.57
, pp. 81-91
-
-
Goris, J.1
Konstantinidis, K.T.2
Klappenbach, J.A.3
Coenye, T.4
Vandamme, P.5
-
64
-
-
4344670204
-
Application of tetranucleotide frequencies for the assignment of genomic fragments
-
Teeling H, Meyerdierks A, Bauer M, Amann R, Glöckner FO, (2004) Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ Microbiol 6: 938-947.
-
(2004)
Environ Microbiol
, vol.6
, pp. 938-947
-
-
Teeling, H.1
Meyerdierks, A.2
Bauer, M.3
Amann, R.4
Glöckner, F.O.5
-
65
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M, Rossello-Mora R, (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106: 19126-19131.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rossello-Mora, R.2
-
66
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, et al. (2004) Versatile and open software for comparing large genomes. Genome Biol 5.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
-
67
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
|