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Volumn 7, Issue , 2017, Pages

Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; SINGLE CELL PROTEINS;

EID: 85015303302     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep44447     Document Type: Article
Times cited : (196)

References (39)
  • 1
    • 27544501461 scopus 로고    scopus 로고
    • Understanding nature's catalytic toolkit
    • Gutteridge, A. & Thornton, J. M. Understanding nature's catalytic toolkit. Trends Biochem. Sci. 30, 622-629 (2005).
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 622-629
    • Gutteridge, A.1    Thornton, J.M.2
  • 2
    • 84992758107 scopus 로고    scopus 로고
    • Proteomic definitions of basement membrane composition in health and disease
    • Randles, M. J., Humphries, M. J. & Lennon, R. Proteomic definitions of basement membrane composition in health and disease. Matrix Biol. doi: 10.1016/j.matbio.2016.08.006 (2016).
    • (2016) Matrix Biol.
    • Randles, M.J.1    Humphries, M.J.2    Lennon, R.3
  • 3
    • 84986888993 scopus 로고    scopus 로고
    • Regulation, signaling, and physiological functions of G-proteins
    • Syrovatkina, V., Alegre, K. O., Dey, R. & Huang, X.-Y. Regulation, Signaling, and Physiological Functions of G-Proteins. J. Mol. Biol. 428, 3850-3868 (2016).
    • (2016) J. Mol. Biol. , vol.428 , pp. 3850-3868
    • Syrovatkina, V.1    Alegre, K.O.2    Dey, R.3    Huang, X.-Y.4
  • 4
    • 84962510070 scopus 로고    scopus 로고
    • The eukaryotic replisome goes under the microscope
    • O'Donnell, M. & Li, H. The Eukaryotic Replisome Goes Under the Microscope. Curr. Biol. 26, R247-R256 (2016).
    • (2016) Curr. Biol. , vol.26 , pp. R247-R256
    • O'Donnell, M.1    Li, H.2
  • 5
  • 7
    • 84885735554 scopus 로고    scopus 로고
    • Mutational landscape and significance across 12 major cancer types
    • Kandoth, C. et al. Mutational landscape and significance across 12 major cancer types. Nature 502, 333-339 (2013).
    • (2013) Nature , vol.502 , pp. 333-339
    • Kandoth, C.1
  • 8
    • 84975742565 scopus 로고    scopus 로고
    • 1000 G. P. A map of human genome variation from population-scale sequencing
    • Consortium, T. 1000 G. P. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Consortium, T.1
  • 10
    • 28244472369 scopus 로고    scopus 로고
    • Prospective identification of tumorigenic prostate cancer stem cells
    • Collins, A. T., Berry, P. A., Hyde, C., Stower, M. J. & Maitland, N. J. Prospective Identification of Tumorigenic Prostate Cancer Stem Cells. Cancer Res. 65, 10946-10951 (2005).
    • (2005) Cancer Res. , vol.65 , pp. 10946-10951
    • Collins, A.T.1    Berry, P.A.2    Hyde, C.3    Stower, M.J.4    Maitland, N.J.5
  • 11
    • 84863697677 scopus 로고    scopus 로고
    • From single cells to deep phenotypes in cancer
    • Bendall, S. C. & Nolan, G. P. From single cells to deep phenotypes in cancer. Nat. Biotechnol. 30, 639-647 (2012).
    • (2012) Nat. Biotechnol. , vol.30 , pp. 639-647
    • Bendall, S.C.1    Nolan, G.P.2
  • 12
    • 84899929564 scopus 로고    scopus 로고
    • Heterogeneity in immune responses: From populations to single cells
    • Satija, R. & Shalek, A. K. Heterogeneity in immune responses: from populations to single cells. Trends Immunol. 35, 219-229 (2014).
    • (2014) Trends Immunol. , vol.35 , pp. 219-229
    • Satija, R.1    Shalek, A.K.2
  • 13
    • 84884377472 scopus 로고    scopus 로고
    • Tumour heterogeneity and cancer cell plasticity
    • Meacham, C. E. & Morrison, S. J. Tumour heterogeneity and cancer cell plasticity. Nature 501, 328-337 (2013).
    • (2013) Nature , vol.501 , pp. 328-337
    • Meacham, C.E.1    Morrison, S.J.2
  • 14
    • 84914706587 scopus 로고    scopus 로고
    • Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing
    • Lee, M.-C. W. et al. Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing. Proc. Natl. Acad. Sci. USA 111, E4726-4735 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. E4726-E4735
    • Lee, M.-C.W.1
  • 15
    • 0001406390 scopus 로고
    • Electronic separation of biological cells by volume
    • Fulwyler, M. J. Electronic Separation of Biological Cells by Volume. Science 150, 910-911 (1965).
    • (1965) Science , vol.150 , pp. 910-911
    • Fulwyler, M.J.1
  • 16
    • 84946916050 scopus 로고    scopus 로고
    • Flow cytometry strikes gold
    • Robinson, J. P. & Roederer, M. Flow cytometry strikes gold. Science 350, 739-740 (2015).
    • (2015) Science , vol.350 , pp. 739-740
    • Robinson, J.P.1    Roederer, M.2
  • 18
    • 68849103521 scopus 로고    scopus 로고
    • Mass cytometry: Technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry
    • Bandura, D. R. et al. Mass Cytometry: Technique for Real Time Single Cell Multitarget Immunoassay Based on Inductively Coupled Plasma Time-of-Flight Mass Spectrometry. Anal. Chem. 81, 6813-6822 (2009).
    • (2009) Anal. Chem. , vol.81 , pp. 6813-6822
    • Bandura, D.R.1
  • 19
    • 79955750055 scopus 로고    scopus 로고
    • Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
    • Bendall, S. C. et al. Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum. Science 332, 687-696 (2011).
    • (2011) Science , vol.332 , pp. 687-696
    • Bendall, S.C.1
  • 20
    • 84866096861 scopus 로고    scopus 로고
    • Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators
    • Bodenmiller, B. et al. Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators. Nat. Biotechnol. 30, 858-867 (2012).
    • (2012) Nat. Biotechnol. , vol.30 , pp. 858-867
    • Bodenmiller, B.1
  • 21
    • 84901599553 scopus 로고    scopus 로고
    • A draft map of the human proteome
    • Kim, M.-S. et al. A draft map of the human proteome. Nature 509, 575-581 (2014).
    • (2014) Nature , vol.509 , pp. 575-581
    • Kim, M.-S.1
  • 22
    • 84901611036 scopus 로고    scopus 로고
    • Mass-spectrometry-based draft of the human proteome
    • Wilhelm, M. et al. Mass-spectrometry-based draft of the human proteome. Nature 509, 582-587 (2014).
    • (2014) Nature , vol.509 , pp. 582-587
    • Wilhelm, M.1
  • 23
    • 84887620404 scopus 로고    scopus 로고
    • What is the total number of protein molecules per cell volume? A call to rethink some published values
    • Milo, R. What is the total number of protein molecules per cell volume? A call to rethink some published values. BioEssays 35, 1050-1055 (2013).
    • (2013) BioEssays , vol.35 , pp. 1050-1055
    • Milo, R.1
  • 24
    • 84946545109 scopus 로고    scopus 로고
    • Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
    • Rotem, A. et al. Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state. Nat. Biotechnol. 33, 1165-1172 (2015).
    • (2015) Nat. Biotechnol. , vol.33 , pp. 1165-1172
    • Rotem, A.1
  • 25
    • 84930685084 scopus 로고    scopus 로고
    • High-throughput single-cell labeling (Hi-SCL) for RNA-Seq using drop-based microfluidics
    • Rotem, A. et al. High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics. PLOS ONE 10, e0116328 (2015).
    • (2015) PLOS ONE , vol.10 , pp. e0116328
    • Rotem, A.1
  • 26
    • 84976609584 scopus 로고    scopus 로고
    • Droplet barcoding for massively parallel single-molecule deep sequencing
    • Lan, F., Haliburton, J. R., Yuan, A. & Abate, A. R. Droplet barcoding for massively parallel single-molecule deep sequencing. Nat. Commun. 7, 11784 (2016).
    • (2016) Nat. Commun. , vol.7 , pp. 11784
    • Lan, F.1    Haliburton, J.R.2    Yuan, A.3    Abate, A.R.4
  • 27
    • 84856484968 scopus 로고    scopus 로고
    • Counting absolute numbers of molecules using unique molecular identifiers
    • Kivioja, T. et al. Counting absolute numbers of molecules using unique molecular identifiers. Nat. Methods 9, 72-74 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 72-74
    • Kivioja, T.1
  • 28
    • 84893421205 scopus 로고    scopus 로고
    • Cancer cell profiling by barcoding allows multiplexed protein analysis in fine-needle aspirates
    • Ullal, A. V. et al. Cancer Cell Profiling by Barcoding Allows Multiplexed Protein Analysis in Fine-Needle Aspirates. Sci. Transl. Med. 6, 219ra9-219ra9 (2014).
    • (2014) Sci. Transl. Med. , vol.6 , pp. 219ra9
    • Ullal, A.V.1
  • 29
    • 84929684999 scopus 로고    scopus 로고
    • Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
    • Macosko, E. Z. et al. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets. Cell 161, 1202-1214 (2015).
    • (2015) Cell , vol.161 , pp. 1202-1214
    • Macosko, E.Z.1
  • 30
    • 84929684998 scopus 로고    scopus 로고
    • Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells
    • Klein, A. M. et al. Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells. Cell 161, 1187-1201 (2015).
    • (2015) Cell , vol.161 , pp. 1187-1201
    • Klein, A.M.1
  • 31
    • 84874488132 scopus 로고    scopus 로고
    • From tubes to drops: Droplet-based microfluidics for ultrahigh-throughput biology
    • Tran, T. M., Lan, F., Thompson, C. S. & Abate, A. R. From tubes to drops: droplet-based microfluidics for ultrahigh-throughput biology. J. Phys. Appl. Phys. 46, 114004 (2013).
    • (2013) J. Phys. Appl. Phys. , vol.46 , pp. 114004
    • Tran, T.M.1    Lan, F.2    Thompson, C.S.3    Abate, A.R.4
  • 32
    • 84862212456 scopus 로고    scopus 로고
    • Droplet microfluidics for high-throughput biological assays
    • Guo, M. T., Rotem, A., Heyman, J. A. & Weitz, D. A. Droplet microfluidics for high-throughput biological assays. Lab. Chip 12, 2146-2155 (2012).
    • (2012) Lab. Chip , vol.12 , pp. 2146-2155
    • Guo, M.T.1    Rotem, A.2    Heyman, J.A.3    Weitz, D.A.4
  • 33
    • 84915778678 scopus 로고    scopus 로고
    • Identification and genetic analysis of cancer cells with PCR-activated cell sorting
    • Eastburn, D. J., Sciambi, A. & Abate, A. R. Identification and genetic analysis of cancer cells with PCR-activated cell sorting. Nucleic Acids Res. 42, e128-e128 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. e128-e128
    • Eastburn, D.J.1    Sciambi, A.2    Abate, A.R.3
  • 34
    • 84882585786 scopus 로고    scopus 로고
    • Ultrahigh-throughput mammalian single-cell reverse-transcriptase polymerase chain reaction in microfluidic drops
    • Eastburn, D. J., Sciambi, A. & Abate, A. R. Ultrahigh-Throughput Mammalian Single-Cell Reverse-Transcriptase Polymerase Chain Reaction in Microfluidic Drops. Anal. Chem. 85, 8016-8021 (2013).
    • (2013) Anal. Chem. , vol.85 , pp. 8016-8021
    • Eastburn, D.J.1    Sciambi, A.2    Abate, A.R.3
  • 35
    • 84859893070 scopus 로고    scopus 로고
    • Massively parallel single-molecule and single-cell emulsion reverse transcription polymerase chain reaction using agarose droplet microfluidics
    • Zhang, H., Jenkins, G., Zou, Y., Zhu, Z. & Yang, C. J. Massively Parallel Single-Molecule and Single-Cell Emulsion Reverse Transcription Polymerase Chain Reaction Using Agarose Droplet Microfluidics. Anal. Chem. 84, 3599-3606 (2012).
    • (2012) Anal. Chem. , vol.84 , pp. 3599-3606
    • Zhang, H.1    Jenkins, G.2    Zou, Y.3    Zhu, Z.4    Yang, C.J.5
  • 36
    • 69549135015 scopus 로고    scopus 로고
    • Beating Poisson encapsulation statistics using close-packed ordering
    • Abate, A. R., Chen, C.-H., Agresti, J. J. & Weitz, D. A. Beating Poisson encapsulation statistics using close-packed ordering. Lab Chip 9, 2628-2631 (2009).
    • (2009) Lab Chip , vol.9 , pp. 2628-2631
    • Abate, A.R.1    Chen, C.-H.2    Agresti, J.J.3    Weitz, D.A.4
  • 37
    • 84960894307 scopus 로고    scopus 로고
    • Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
    • Zheng, G. X. Y. et al. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat. Biotechnol. 34, 303-311 (2016).
    • (2016) Nat. Biotechnol. , vol.34 , pp. 303-311
    • Zheng, G.X.Y.1
  • 38
    • 76649091586 scopus 로고    scopus 로고
    • Sensitive plasma protein analysis by microparticle-based proximity ligation assays
    • Darmanis, S. et al. Sensitive Plasma Protein Analysis by Microparticle-based Proximity Ligation Assays. Mol. Cell. Proteomics 9, 327-335 (2010).
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 327-335
    • Darmanis, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.