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Volumn 9, Issue 12, 2014, Pages

Comparison of Multiple Displacement Amplification (MDA) and Multiple Annealing and Looping-Based Amplification Cycles (MALBAC) in single-cell sequencing

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL FUNCTION; CELL HETEROGENEITY; COMPARATIVE STUDY; CONTROLLED STUDY; DNA FRAGMENTATION; GENE AMPLIFICATION; GENE MAPPING; GENETIC PROCEDURES; HETEROZYGOSITY; HOMOZYGOSITY; MULTIPLE ANNEALING AND LOOPING BASED AMPLIFICATION CYCLE; MULTIPLE DISPLACEMENT AMPLIFICATION; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SEQUENCE ALIGNMENT; SINGLE CELL SEQUENCING; SINGLE NUCLEOTIDE POLYMORPHISM; SPERM; CHEMISTRY; DNA SEQUENCE; GENETICS; GENOMICS; HUMAN; HUMAN GENOME; MALE; METABOLISM; NUCLEIC ACID AMPLIFICATION; PROCEDURES; SINGLE CELL ANALYSIS; SPERMATOZOON;

EID: 84915747048     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0114520     Document Type: Article
Times cited : (51)

References (25)
  • 1
    • 84893594630 scopus 로고    scopus 로고
    • Genome analyses of single human oocytes
    • Hou Y, Fan W, Yan L, Li R, Lian Y, et al. (2013) Genome analyses of single human oocytes. Cell 155: 1492-1506.
    • (2013) Cell , vol.155 , pp. 1492-1506
    • Hou, Y.1    Fan, W.2    Yan, L.3    Li, R.4    Lian, Y.5
  • 2
    • 84871447495 scopus 로고    scopus 로고
    • Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing
    • Lu S, Zong C, Fan W, Yang M, Li J, et al. (2012) Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing. Science 338: 1627-1630.
    • (2012) Science , vol.338 , pp. 1627-1630
    • Lu, S.1    Zong, C.2    Fan, W.3    Yang, M.4    Li, J.5
  • 3
    • 84864258558 scopus 로고    scopus 로고
    • Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm
    • Wang J, Fan HC, Behr B, Quake SR (2012) Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm. Cell 150: 402-412.
    • (2012) Cell , vol.150 , pp. 402-412
    • Wang, J.1    Fan, H.C.2    Behr, B.3    Quake, S.R.4
  • 4
    • 84868032982 scopus 로고    scopus 로고
    • Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain
    • Evrony GD, Cai X, Lee E, Hills LB, Elhosary PC, et al. (2012) Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain. Cell 151: 483-496.
    • (2012) Cell , vol.151 , pp. 483-496
    • Evrony, G.D.1    Cai, X.2    Lee, E.3    Hills, L.B.4    Elhosary, P.C.5
  • 5
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of single-nucleotide and copynumber variations of a single human cell
    • Zong C, Lu S, Chapman AR, Xie XS (2012) Genome-wide detection of single-nucleotide and copynumber variations of a single human cell. Science 338: 1622-1626.
    • (2012) Science , vol.338 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4
  • 6
    • 84863229772 scopus 로고    scopus 로고
    • Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm
    • Hou Y, Song L, Zhu P, Zhang B, Tao Y, et al. (2012) Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 148: 873-885.
    • (2012) Cell , vol.148 , pp. 873-885
    • Hou, Y.1    Song, L.2    Zhu, P.3    Zhang, B.4    Tao, Y.5
  • 7
    • 0026736251 scopus 로고
    • Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer
    • Telenius H, Carter NP, Bebb CE, Nordenskjold M, Ponder BA, et al. (1992) Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13: 718-725.
    • (1992) Genomics , vol.13 , pp. 718-725
    • Telenius, H.1    Carter, N.P.2    Bebb, C.E.3    Nordenskjold, M.4    Ponder, B.A.5
  • 8
    • 0026755807 scopus 로고
    • Whole genome amplification from a single cell: Implications for genetic analysis
    • Zhang L, Cui X, Schmitt K, Hubert R, Navidi W, et al. (1992) Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci U S A 89: 5847-5851.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 5847-5851
    • Zhang, L.1    Cui, X.2    Schmitt, K.3    Hubert, R.4    Navidi, W.5
  • 9
    • 0034830935 scopus 로고    scopus 로고
    • Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification
    • Dean FB, Nelson JR, Giesler TL, Lasken RS (2001) Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res 11: 1095-1099.
    • (2001) Genome Res , vol.11 , pp. 1095-1099
    • Dean, F.B.1    Nelson, J.R.2    Giesler, T.L.3    Lasken, R.S.4
  • 11
    • 41549146240 scopus 로고    scopus 로고
    • Whole genome amplification using single-primer PCR
    • Lao K, Xu NL, Straus NA (2008) Whole genome amplification using single-primer PCR. Biotechnol J 3: 378-382.
    • (2008) Biotechnol J , vol.3 , pp. 378-382
    • Lao, K.1    Xu, N.L.2    Straus, N.A.3
  • 12
    • 0032948228 scopus 로고    scopus 로고
    • Multiple mutation analyses in single tumor cells with improved whole genome amplification
    • Dietmaier W, Hartmann A, Wallinger S, Heinmoller E, Kerner T, et al. (1999) Multiple mutation analyses in single tumor cells with improved whole genome amplification. Am J Pathol 154: 83-95.
    • (1999) Am J Pathol , vol.154 , pp. 83-95
    • Dietmaier, W.1    Hartmann, A.2    Wallinger, S.3    Heinmoller, E.4    Kerner, T.5
  • 13
    • 18344396798 scopus 로고    scopus 로고
    • Comprehensive human genome amplification using multiple displacement amplification
    • Dean FB, Hosono S, Fang L, Wu X, Faruqi AF, et al. (2002) Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A 99: 5261-5266.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 5261-5266
    • Dean, F.B.1    Hosono, S.2    Fang, L.3    Wu, X.4    Faruqi, A.F.5
  • 14
    • 65549130980 scopus 로고    scopus 로고
    • Genomic DNA amplification by the multiple displacement amplification (MDA) method
    • Lasken RS (2009) Genomic DNA amplification by the multiple displacement amplification (MDA) method. Biochem Soc Trans 37: 450-453.
    • (2009) Biochem Soc Trans , vol.37 , pp. 450-453
    • Lasken, R.S.1
  • 15
    • 84880213158 scopus 로고    scopus 로고
    • Single-cell paired-end genome sequencing reveals structural variation per cell cycle
    • Voet T, Kumar P, Van Loo P, Cooke SL, Marshall J, et al. (2013) Single-cell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Res 41: 6119-6138.
    • (2013) Nucleic Acids Res , vol.41 , pp. 6119-6138
    • Voet, T.1    Kumar, P.2    Van Loo, P.3    Cooke, S.L.4    Marshall, J.5
  • 16
    • 34247489656 scopus 로고    scopus 로고
    • Mechanism of chimera formation during the Multiple Displacement Amplification reaction
    • Lasken RS, Stockwell TB (2007) Mechanism of chimera formation during the Multiple Displacement Amplification reaction. BMC Biotechnol 7: 19.
    • (2007) BMC Biotechnol , vol.7 , pp. 19
    • Lasken, R.S.1    Stockwell, T.B.2
  • 17
    • 84875160584 scopus 로고    scopus 로고
    • Single-cell sequencing in its prime
    • Lasken RS (2013) Single-cell sequencing in its prime. Nat Biotechnol 31: 211-212.
    • (2013) Nat Biotechnol , vol.31 , pp. 211-212
    • Lasken, R.S.1
  • 18
    • 84863338168 scopus 로고    scopus 로고
    • Direct, genome-wide assessment of DNA mutations in single cells
    • Gundry M, Li W, Maqbool SB, Vijg J (2012) Direct, genome-wide assessment of DNA mutations in single cells. Nucleic Acids Res 40: 2032-2040.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2032-2040
    • Gundry, M.1    Li, W.2    Maqbool, S.B.3    Vijg, J.4
  • 20
    • 0041523918 scopus 로고    scopus 로고
    • Estimating the repeat structure and length of DNA sequences using L-tuples
    • Li X, Waterman MS (2003) Estimating the repeat structure and length of DNA sequences using L-tuples. Genome Res 13: 1916-1922.
    • (2003) Genome Res , vol.13 , pp. 1916-1922
    • Li, X.1    Waterman, M.S.2
  • 21
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 23
    • 84876532610 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Coordinators NR (2013) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 41: D8-D20.
    • (2013) Nucleic Acids Res , vol.41 , pp. D8-D20
    • Coordinators, N.R.1
  • 24
    • 70249089090 scopus 로고    scopus 로고
    • Single-molecule sequencing of an individual human genome
    • Pushkarev D, Neff NF, Quake SR (2009) Single-molecule sequencing of an individual human genome. Nat Biotechnol 27: 847-850.
    • (2009) Nat Biotechnol , vol.27 , pp. 847-850
    • Pushkarev, D.1    Neff, N.F.2    Quake, S.R.3
  • 25
    • 79952284127 scopus 로고    scopus 로고
    • Hallmarks of cancer: The next generation
    • Hanahan D, Weinberg RA (2011) Hallmarks of cancer: the next generation. Cell 144: 646-674.
    • (2011) Cell , vol.144 , pp. 646-674
    • Hanahan, D.1    Weinberg, R.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.