메뉴 건너뛰기




Volumn 111, Issue , 2017, Pages 118-131

Probiotic characters of Bifidobacterium and Lactobacillus are a result of the ongoing gene acquisition and genome minimization evolutionary trends

Author keywords

Genomics; Microbe host interaction; Microbial ecology; Probiotics; Reductive evolution; Strain specific characters

Indexed keywords

PROBIOTIC AGENT;

EID: 85027961452     PISSN: 08824010     EISSN: 10961208     Source Type: Journal    
DOI: 10.1016/j.micpath.2017.08.021     Document Type: Review
Times cited : (61)

References (141)
  • 1
    • 84888049920 scopus 로고    scopus 로고
    • Commensal bacteria control cancer response to therapy by modulating the tumor microenvironment
    • Iida, N., Dzutsev, A., Stewart, C.A., Smith, L., Bouladoux, N., Weingarten, R.A., et al. Commensal bacteria control cancer response to therapy by modulating the tumor microenvironment. Science 342 (2013), 967–970.
    • (2013) Science , vol.342 , pp. 967-970
    • Iida, N.1    Dzutsev, A.2    Stewart, C.A.3    Smith, L.4    Bouladoux, N.5    Weingarten, R.A.6
  • 2
    • 79952712983 scopus 로고    scopus 로고
    • Gut microbiome-host interactions in health and disease
    • Kinross, J.M., Darzi, A.W., Nicholson, J.K., Gut microbiome-host interactions in health and disease. Genome Med., 3, 2011, 14.
    • (2011) Genome Med. , vol.3 , pp. 14
    • Kinross, J.M.1    Darzi, A.W.2    Nicholson, J.K.3
  • 4
  • 6
  • 7
    • 84922735613 scopus 로고    scopus 로고
    • Extensive strain-level copy-number variation across human gut microbiome species
    • Greenblum, S., Carr, R., Borenstein, E., Extensive strain-level copy-number variation across human gut microbiome species. Cell 160 (2015), 583–594.
    • (2015) Cell , vol.160 , pp. 583-594
    • Greenblum, S.1    Carr, R.2    Borenstein, E.3
  • 9
    • 84962110190 scopus 로고    scopus 로고
    • Metabolic role of lactobacilli in weight modification in humans and animals
    • Drissi, F., Raoult, D., Merhej, V., Metabolic role of lactobacilli in weight modification in humans and animals. Microb. Pathog. 106 (2016), 182–194.
    • (2016) Microb. Pathog. , vol.106 , pp. 182-194
    • Drissi, F.1    Raoult, D.2    Merhej, V.3
  • 10
    • 85047593551 scopus 로고    scopus 로고
    • The role of the gut microbiome in the healthy adult status
    • D'Argenio, V., Salvatore, F., The role of the gut microbiome in the healthy adult status. Clin. Chim. Acta 451 (2015), 97–102.
    • (2015) Clin. Chim. Acta , vol.451 , pp. 97-102
    • D'Argenio, V.1    Salvatore, F.2
  • 11
    • 0034283229 scopus 로고    scopus 로고
    • Intraspecies variation in bacterial genomes: the need for a species genome concept
    • Lan, R., Reeves, P.R., Intraspecies variation in bacterial genomes: the need for a species genome concept. Trends Microbiol. 8 (2000), 396–401.
    • (2000) Trends Microbiol. , vol.8 , pp. 396-401
    • Lan, R.1    Reeves, P.R.2
  • 13
    • 65249119418 scopus 로고    scopus 로고
    • The human intestinal microbiome: a new frontier of human biology
    • Hattori, M., Taylor, T.D., The human intestinal microbiome: a new frontier of human biology. DNA Res. 16 (2009), 1–12.
    • (2009) DNA Res. , vol.16 , pp. 1-12
    • Hattori, M.1    Taylor, T.D.2
  • 15
    • 0027983955 scopus 로고
    • Flagellate and non-flagellate Proteus mirabilis in the development of experimental urinary tract infection
    • Zunino, P., Piccini, C., Legnani-Fajardo, C., Flagellate and non-flagellate Proteus mirabilis in the development of experimental urinary tract infection. Microb. Pathog. 16 (1994), 379–385.
    • (1994) Microb. Pathog. , vol.16 , pp. 379-385
    • Zunino, P.1    Piccini, C.2    Legnani-Fajardo, C.3
  • 16
    • 84861203398 scopus 로고    scopus 로고
    • Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature
    • Heithoff, D.M., Shimp, W.R., House, J.K., Xie, Y., Weimer, B.C., Sinsheimer, R.L., et al. Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature. PLoS Pathog., 8, 2012, e1002647.
    • (2012) PLoS Pathog. , vol.8 , pp. e1002647
    • Heithoff, D.M.1    Shimp, W.R.2    House, J.K.3    Xie, Y.4    Weimer, B.C.5    Sinsheimer, R.L.6
  • 17
    • 84886544230 scopus 로고    scopus 로고
    • Strain variability of the behavior of foodborne bacterial pathogens: a review
    • Lianou, A., Koutsoumanis, K.P., Strain variability of the behavior of foodborne bacterial pathogens: a review. Int. J. food Microbiol. 167 (2013), 310–321.
    • (2013) Int. J. food Microbiol. , vol.167 , pp. 310-321
    • Lianou, A.1    Koutsoumanis, K.P.2
  • 18
    • 84954323025 scopus 로고    scopus 로고
    • Gene loss dominates as a source of genetic variation within clonal pathogenic bacterial species
    • Bolotin, E., Hershberg, R., Gene loss dominates as a source of genetic variation within clonal pathogenic bacterial species. Genome Biol. Evol. 7 (2015), 2173–2187.
    • (2015) Genome Biol. Evol. , vol.7 , pp. 2173-2187
    • Bolotin, E.1    Hershberg, R.2
  • 19
    • 75749155705 scopus 로고    scopus 로고
    • Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches
    • Siezen, R.J., Tzeneva, V.A., Castioni, A., Wels, M., Phan, H.T., Rademaker, J.L., et al. Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches. Environ. Microbiol. 12 (2010), 758–773.
    • (2010) Environ. Microbiol. , vol.12 , pp. 758-773
    • Siezen, R.J.1    Tzeneva, V.A.2    Castioni, A.3    Wels, M.4    Phan, H.T.5    Rademaker, J.L.6
  • 21
  • 22
    • 0035520472 scopus 로고    scopus 로고
    • Evolutionary genomics of pathogenic bacteria
    • Fitzgerald, J.R., Musser, J.M., Evolutionary genomics of pathogenic bacteria. Trends Microbiol. 9 (2001), 547–553.
    • (2001) Trends Microbiol. , vol.9 , pp. 547-553
    • Fitzgerald, J.R.1    Musser, J.M.2
  • 23
    • 84871956840 scopus 로고    scopus 로고
    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
    • Sharon, I., Morowitz, M.J., Thomas, B.C., Costello, E.K., Relman, D.A., Banfield, J.F., Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res. 23 (2013), 111–120.
    • (2013) Genome Res. , vol.23 , pp. 111-120
    • Sharon, I.1    Morowitz, M.J.2    Thomas, B.C.3    Costello, E.K.4    Relman, D.A.5    Banfield, J.F.6
  • 24
  • 25
    • 84943339391 scopus 로고    scopus 로고
    • A genomic view of lactobacilli and pediococci demonstrates that phylogeny matches ecology and physiology
    • Zheng, J., Ruan, L., Sun, M., Gänzle, M., A genomic view of lactobacilli and pediococci demonstrates that phylogeny matches ecology and physiology. Appl. Environ. Microbiol. 81 (2015), 7233–7243.
    • (2015) Appl. Environ. Microbiol. , vol.81 , pp. 7233-7243
    • Zheng, J.1    Ruan, L.2    Sun, M.3    Gänzle, M.4
  • 26
    • 84980417565 scopus 로고    scopus 로고
    • Phylogenomic analyses and comparative studies on genomes of the bifidobacteriales: identification of molecular signatures specific for the order bifidobacteriales and its different subclades
    • Zhang, G., Gao, B., Adeolu, M., Khadka, B., Gupta, R.S., Phylogenomic analyses and comparative studies on genomes of the bifidobacteriales: identification of molecular signatures specific for the order bifidobacteriales and its different subclades. Front. Microbiol., 7, 2016.
    • (2016) Front. Microbiol. , vol.7
    • Zhang, G.1    Gao, B.2    Adeolu, M.3    Khadka, B.4    Gupta, R.S.5
  • 27
    • 0032058201 scopus 로고    scopus 로고
    • Probiotics: functionality and commercial status
    • Scheinbach, S., Probiotics: functionality and commercial status. Biotechnol. Adv. 16 (1998), 581–608.
    • (1998) Biotechnol. Adv. , vol.16 , pp. 581-608
    • Scheinbach, S.1
  • 28
    • 0007097063 scopus 로고    scopus 로고
    • Populations of Lactobacillus acidophilus, Bifidobacterium spp., and Lactobacillus casei in commercial fermented milk products
    • Shah, N.P., Ali, J.F., Ravula, R.R., Populations of Lactobacillus acidophilus, Bifidobacterium spp., and Lactobacillus casei in commercial fermented milk products. Biosci. Microflora 19 (2000), 35–39.
    • (2000) Biosci. Microflora , vol.19 , pp. 35-39
    • Shah, N.P.1    Ali, J.F.2    Ravula, R.R.3
  • 29
    • 33748786019 scopus 로고    scopus 로고
    • Microbial and processing criteria for production of probiotics: a review
    • Kosin, B., Rakshit, S.K., Microbial and processing criteria for production of probiotics: a review. Food Technol. Biotechnol. 44 (2006), 371–379.
    • (2006) Food Technol. Biotechnol. , vol.44 , pp. 371-379
    • Kosin, B.1    Rakshit, S.K.2
  • 31
    • 2942556635 scopus 로고    scopus 로고
    • A special fondness for lactobacilli
    • Tannock, G.W., A special fondness for lactobacilli. Appl. Environ. Microbiol. 70 (2004), 3189–3194.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3189-3194
    • Tannock, G.W.1
  • 32
    • 42349105761 scopus 로고    scopus 로고
    • Mucosal delivery of therapeutic and prophylactic molecules using lactic acid bacteria
    • Wells, J.M., Mercenier, A., Mucosal delivery of therapeutic and prophylactic molecules using lactic acid bacteria. Nat. Rev. Microbiol. 6 (2008), 349–362.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 349-362
    • Wells, J.M.1    Mercenier, A.2
  • 34
    • 0003935336 scopus 로고    scopus 로고
    • The Genera of Lactic Acid Bacteria
    • Springer science & business media
    • Holzapfel, W., Wood, B.J., The Genera of Lactic Acid Bacteria. 2012, Springer science & business media.
    • (2012)
    • Holzapfel, W.1    Wood, B.J.2
  • 35
    • 27544483012 scopus 로고    scopus 로고
    • Genetics of Lactic Acid Bacteria
    • Springer science & business media
    • Wood, B.J., Warner, P.J., Genetics of Lactic Acid Bacteria. 2012, Springer science & business media.
    • (2012)
    • Wood, B.J.1    Warner, P.J.2
  • 36
    • 84927797920 scopus 로고    scopus 로고
    • Overview of the ecology and biodiversity of the LAB
    • Giraffa, G., Overview of the ecology and biodiversity of the LAB. Lactic Acid Bact. Biodivers. Taxonomy, 2014, 45–54.
    • (2014) Lactic Acid Bact. Biodivers. Taxonomy , pp. 45-54
    • Giraffa, G.1
  • 38
    • 84955593194 scopus 로고    scopus 로고
    • Highly heterogeneous probiotic Lactobacillus species in healthy iranians with low functional activities
    • Rohani, M., Noohi, N., Talebi, M., Katouli, M., Pourshafie, M.R., Highly heterogeneous probiotic Lactobacillus species in healthy iranians with low functional activities. PloS One, 10, 2015, e0144467.
    • (2015) PloS One , vol.10 , pp. e0144467
    • Rohani, M.1    Noohi, N.2    Talebi, M.3    Katouli, M.4    Pourshafie, M.R.5
  • 39
    • 84876026528 scopus 로고    scopus 로고
    • Species and strain specificity of Lactobacillus probiotics effect on weight regulation
    • Million, M., Raoult, D., Species and strain specificity of Lactobacillus probiotics effect on weight regulation. Microb. Pathog. 55 (2013), 52–54.
    • (2013) Microb. Pathog. , vol.55 , pp. 52-54
    • Million, M.1    Raoult, D.2
  • 40
    • 33751429178 scopus 로고    scopus 로고
    • The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
    • Alm, E., Huang, K., Arkin, A., The evolution of two-component systems in bacteria reveals different strategies for niche adaptation. PLoS Comput. Biol., 2, 2006, e143.
    • (2006) PLoS Comput. Biol. , vol.2 , pp. e143
    • Alm, E.1    Huang, K.2    Arkin, A.3
  • 41
    • 69749114507 scopus 로고    scopus 로고
    • Biodiversity, ecological determinants, and metabolic exploitation of sourdough microbiota
    • De Vuyst, L., Vrancken, G., Ravyts, F., Rimaux, T., Weckx, S., Biodiversity, ecological determinants, and metabolic exploitation of sourdough microbiota. Food Microbiol. 26 (2009), 666–675.
    • (2009) Food Microbiol. , vol.26 , pp. 666-675
    • De Vuyst, L.1    Vrancken, G.2    Ravyts, F.3    Rimaux, T.4    Weckx, S.5
  • 42
    • 84954149949 scopus 로고    scopus 로고
    • Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes
    • Mock, T., Daines, S.J., Geider, R., Collins, S., Metodiev, M., Millar, A.J., et al. Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes. Glob. Change Biol. 22 (2016), 61–75.
    • (2016) Glob. Change Biol. , vol.22 , pp. 61-75
    • Mock, T.1    Daines, S.J.2    Geider, R.3    Collins, S.4    Metodiev, M.5    Millar, A.J.6
  • 44
    • 33645073688 scopus 로고    scopus 로고
    • Phenotypic variation in bacteria: the role of feedback regulation
    • Smits, W.K., Kuipers, O.P., Veening, J.-W., Phenotypic variation in bacteria: the role of feedback regulation. Nat. Rev. Microbiol. 4 (2006), 259–271.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 259-271
    • Smits, W.K.1    Kuipers, O.P.2    Veening, J.-W.3
  • 45
    • 84872182284 scopus 로고    scopus 로고
    • Microevolutionary, macroevolutionary, ecological and taxonomical implications of punctuational theories of adaptive evolution
    • Flegr, J., Microevolutionary, macroevolutionary, ecological and taxonomical implications of punctuational theories of adaptive evolution. Biol. Direct, 8, 2013, 1.
    • (2013) Biol. Direct , vol.8 , pp. 1
    • Flegr, J.1
  • 46
    • 66149150877 scopus 로고    scopus 로고
    • Microbial community structure and its functional implications
    • Fuhrman, J.A., Microbial community structure and its functional implications. Nature 459 (2009), 193–199.
    • (2009) Nature , vol.459 , pp. 193-199
    • Fuhrman, J.A.1
  • 47
    • 84874566601 scopus 로고    scopus 로고
    • Beyond the genome: community-level analysis of the microbial world
    • Zarraonaindia, I., Smith, D.P., Gilbert, J.A., Beyond the genome: community-level analysis of the microbial world. Biol. Philosophy 28 (2013), 261–282.
    • (2013) Biol. Philosophy , vol.28 , pp. 261-282
    • Zarraonaindia, I.1    Smith, D.P.2    Gilbert, J.A.3
  • 50
    • 31444447130 scopus 로고    scopus 로고
    • The diversity and biogeography of soil bacterial communities
    • Fierer, N., Jackson, R.B., The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U. S. A. 103 (2006), 626–631.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 626-631
    • Fierer, N.1    Jackson, R.B.2
  • 51
    • 68149175229 scopus 로고    scopus 로고
    • The consequences of genetic drift for bacterial genome complexity
    • Kuo, C.-H., Moran, N.A., Ochman, H., The consequences of genetic drift for bacterial genome complexity. Genome Res. 19 (2009), 1450–1454.
    • (2009) Genome Res. , vol.19 , pp. 1450-1454
    • Kuo, C.-H.1    Moran, N.A.2    Ochman, H.3
  • 52
    • 84998892589 scopus 로고    scopus 로고
    • Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient
    • Monard, C., Gantner, S., Bertilsson, S., Hallin, S., Stenlid, J., Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient. Sci. Rep., 6, 2016.
    • (2016) Sci. Rep. , vol.6
    • Monard, C.1    Gantner, S.2    Bertilsson, S.3    Hallin, S.4    Stenlid, J.5
  • 54
    • 78650491780 scopus 로고    scopus 로고
    • Mycobacterium leprae: genes, pseudogenes and genetic diversity
    • Singh, P., Cole, S.T., Mycobacterium leprae: genes, pseudogenes and genetic diversity. Future Microbiol. 6 (2011), 57–71.
    • (2011) Future Microbiol. , vol.6 , pp. 57-71
    • Singh, P.1    Cole, S.T.2
  • 55
    • 84871572896 scopus 로고    scopus 로고
    • Factors behind junk DNA in bacteria
    • Gil, R., Latorre, A., Factors behind junk DNA in bacteria. Genes 3 (2012), 634–650.
    • (2012) Genes , vol.3 , pp. 634-650
    • Gil, R.1    Latorre, A.2
  • 56
    • 65549108485 scopus 로고    scopus 로고
    • Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14
    • Ding, F., Tang, P., Hsu, M.-H., Cui, P., Hu, S., Yu, J., et al. Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. BMC Genomics, 10, 2009, 158.
    • (2009) BMC Genomics , vol.10 , pp. 158
    • Ding, F.1    Tang, P.2    Hsu, M.-H.3    Cui, P.4    Hu, S.5    Yu, J.6
  • 57
    • 84860265013 scopus 로고    scopus 로고
    • Microbial lifestyle and genome signatures
    • Dutta, C., Paul, S., Microbial lifestyle and genome signatures. Curr. Genomics 13 (2012), 153–162.
    • (2012) Curr. Genomics , vol.13 , pp. 153-162
    • Dutta, C.1    Paul, S.2
  • 58
    • 84878592150 scopus 로고    scopus 로고
    • Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making
    • Ghosh, W., Alam, M., Roy, C., Pyne, P., George, A., Chakraborty, R., et al. Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making. PloS One, 8, 2013, e64856.
    • (2013) PloS One , vol.8 , pp. e64856
    • Ghosh, W.1    Alam, M.2    Roy, C.3    Pyne, P.4    George, A.5    Chakraborty, R.6
  • 60
    • 85014811764 scopus 로고    scopus 로고
    • Horizontal gene acquisitions, mobile element proliferation, and genome decay in the host-restricted plant pathogen erwinia tracheiphila
    • Shapiro, L.R., Scully, E.D., Straub, T.J., Park, J., Stephenson, A.G., Beattie, G.A., et al. Horizontal gene acquisitions, mobile element proliferation, and genome decay in the host-restricted plant pathogen erwinia tracheiphila. Genome Biol. Evol. 8 (2016), 649–664.
    • (2016) Genome Biol. Evol. , vol.8 , pp. 649-664
    • Shapiro, L.R.1    Scully, E.D.2    Straub, T.J.3    Park, J.4    Stephenson, A.G.5    Beattie, G.A.6
  • 61
    • 81155131410 scopus 로고    scopus 로고
    • Gene decay in Shigella as an incipient stage of host-adaptation
    • Feng, Y., Chen, Z., Liu, S.-L., Gene decay in Shigella as an incipient stage of host-adaptation. PLoS One, 6, 2011, e27754.
    • (2011) PLoS One , vol.6 , pp. e27754
    • Feng, Y.1    Chen, Z.2    Liu, S.-L.3
  • 63
    • 0037007113 scopus 로고    scopus 로고
    • Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life
    • Gil, R., Sabater-Muñoz, B., Latorre, A., Silva, F.J., Moya, A., Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life. Proc. Natl. Acad. Sci. 99 (2002), 4454–4458.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 4454-4458
    • Gil, R.1    Sabater-Muñoz, B.2    Latorre, A.3    Silva, F.J.4    Moya, A.5
  • 64
    • 0037384544 scopus 로고    scopus 로고
    • Why are the genomes of endosymbiotic bacteria so stable?
    • Silva, F.J., Latorre, A., Moya, A., Why are the genomes of endosymbiotic bacteria so stable?. Trends Genet. 19 (2003), 176–180.
    • (2003) Trends Genet. , vol.19 , pp. 176-180
    • Silva, F.J.1    Latorre, A.2    Moya, A.3
  • 65
    • 38749115890 scopus 로고    scopus 로고
    • Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion
    • Callanan, M., Kaleta, P., O'Callaghan, J., O'Sullivan, O., Jordan, K., McAuliffe, O., et al. Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. J. Bacteriol. 190 (2008), 727–735.
    • (2008) J. Bacteriol. , vol.190 , pp. 727-735
    • Callanan, M.1    Kaleta, P.2    O'Callaghan, J.3    O'Sullivan, O.4    Jordan, K.5    McAuliffe, O.6
  • 66
    • 79952266302 scopus 로고    scopus 로고
    • The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri
    • Frese, S.A., Benson, A.K., Tannock, G.W., Loach, D.M., Kim, J., Zhang, M., et al. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet., 7, 2011, e1001314.
    • (2011) PLoS Genet. , vol.7 , pp. e1001314
    • Frese, S.A.1    Benson, A.K.2    Tannock, G.W.3    Loach, D.M.4    Kim, J.5    Zhang, M.6
  • 67
    • 84867018919 scopus 로고    scopus 로고
    • Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
    • Broadbent, J.R., Neeno-Eckwall, E.C., Stahl, B., Tandee, K., Cai, H., Morovic, W., et al. Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics, 13, 2012, 533.
    • (2012) BMC Genomics , vol.13 , pp. 533
    • Broadbent, J.R.1    Neeno-Eckwall, E.C.2    Stahl, B.3    Tandee, K.4    Cai, H.5    Morovic, W.6
  • 68
    • 73749085106 scopus 로고    scopus 로고
    • Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution
    • Cai, H., Thompson, R., Budinich, M.F., Broadbent, J.R., Steele, J.L., Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution. Genome Biol. Evol. 1 (2009), 239–257.
    • (2009) Genome Biol. Evol. , vol.1 , pp. 239-257
    • Cai, H.1    Thompson, R.2    Budinich, M.F.3    Broadbent, J.R.4    Steele, J.L.5
  • 70
    • 0029864118 scopus 로고    scopus 로고
    • Characterization of lactobacilli by Southern-type hybridization with a Lactobacillus plantarum pyrDFE probe
    • Bringel, F., Curk, M.-C., Hubert, J.-C., Characterization of lactobacilli by Southern-type hybridization with a Lactobacillus plantarum pyrDFE probe. Int. J. Syst. Evol. Microbiol. 46 (1996), 588–594.
    • (1996) Int. J. Syst. Evol. Microbiol. , vol.46 , pp. 588-594
    • Bringel, F.1    Curk, M.-C.2    Hubert, J.-C.3
  • 71
    • 84942895870 scopus 로고    scopus 로고
    • Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera
    • Sun, Z., Harris, H.M., McCann, A., Guo, C., Argimón, S., Zhang, W., et al. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera. Nat. Commun., 6, 2015.
    • (2015) Nat. Commun. , vol.6
    • Sun, Z.1    Harris, H.M.2    McCann, A.3    Guo, C.4    Argimón, S.5    Zhang, W.6
  • 72
    • 84982980716 scopus 로고    scopus 로고
    • Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats
    • Martino, M.E., Bayjanov, J.R., Caffrey, B.E., Wels, M., Joncour, P., Hughes, S., et al. Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats. Environ. Microbiol. 18 (2016), 4974–4989.
    • (2016) Environ. Microbiol. , vol.18 , pp. 4974-4989
    • Martino, M.E.1    Bayjanov, J.R.2    Caffrey, B.E.3    Wels, M.4    Joncour, P.5    Hughes, S.6
  • 74
    • 84884610218 scopus 로고    scopus 로고
    • Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG
    • Douillard, F.P., Ribbera, A., Kant, R., Pietilä, T.E., Järvinen, H.M., Messing, M., et al. Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG. PLoS Genet., 9, 2013, e1003683.
    • (2013) PLoS Genet. , vol.9 , pp. e1003683
    • Douillard, F.P.1    Ribbera, A.2    Kant, R.3    Pietilä, T.E.4    Järvinen, H.M.5    Messing, M.6
  • 77
    • 80052190507 scopus 로고    scopus 로고
    • Specialized adaptation of a lactic acid bacterium to the milk environment: the comparative genomics of Streptococcus thermophilus LMD-9
    • Goh, Y.J., Goin, C., O'Flaherty, S., Altermann, E., Hutkins, R., Specialized adaptation of a lactic acid bacterium to the milk environment: the comparative genomics of Streptococcus thermophilus LMD-9. Microb. Cell Factories, 10, 2011, S22.
    • (2011) Microb. Cell Factories , vol.10 , pp. S22
    • Goh, Y.J.1    Goin, C.2    O'Flaherty, S.3    Altermann, E.4    Hutkins, R.5
  • 78
    • 85014850020 scopus 로고    scopus 로고
    • The variable regions of Lactobacillus rhamnosus genomes reveal the dynamic evolution of metabolic and host-adaptation repertoires
    • Ceapa, C., Davids, M., Ritari, J., Lambert, J., Wels, M., Douillard, F.P., et al. The variable regions of Lactobacillus rhamnosus genomes reveal the dynamic evolution of metabolic and host-adaptation repertoires. Genome Biol. Evol. 8 (2016), 1889–1905.
    • (2016) Genome Biol. Evol. , vol.8 , pp. 1889-1905
    • Ceapa, C.1    Davids, M.2    Ritari, J.3    Lambert, J.4    Wels, M.5    Douillard, F.P.6
  • 79
    • 84940107943 scopus 로고    scopus 로고
    • The differential view of genotype–phenotype relationships
    • Orgogozo, V., Morizot, B., Martin, A., The differential view of genotype–phenotype relationships. Front. Genet., 6, 2015, 179.
    • (2015) Front. Genet. , vol.6 , pp. 179
    • Orgogozo, V.1    Morizot, B.2    Martin, A.3
  • 80
    • 85015680755 scopus 로고    scopus 로고
    • A rapid and reproducible genomic DNA extraction protocol for sequence-based identification of archaea, bacteria, cyanobacteria, diatoms, fungi, and green algae
    • Saba, F., Papizadeh, M., Khansha, J., Sedghi, M., Rasooli, M., Amoozegar, M.A., et al. A rapid and reproducible genomic DNA extraction protocol for sequence-based identification of archaea, bacteria, cyanobacteria, diatoms, fungi, and green algae. J. Med. Bacteriol. 5 (2017), 22–28.
    • (2017) J. Med. Bacteriol. , vol.5 , pp. 22-28
    • Saba, F.1    Papizadeh, M.2    Khansha, J.3    Sedghi, M.4    Rasooli, M.5    Amoozegar, M.A.6
  • 83
    • 77956820217 scopus 로고    scopus 로고
    • Invited review: Lactobacillus helveticus—a thermophilic dairy starter related to gut bacteria
    • Slattery, L., O'Callaghan, J., Fitzgerald, G., Beresford, T., Ross, R., Invited review: Lactobacillus helveticus—a thermophilic dairy starter related to gut bacteria. J. Dairy Sci. 93 (2010), 4435–4454.
    • (2010) J. Dairy Sci. , vol.93 , pp. 4435-4454
    • Slattery, L.1    O'Callaghan, J.2    Fitzgerald, G.3    Beresford, T.4    Ross, R.5
  • 84
    • 85015697916 scopus 로고    scopus 로고
    • Pyrenochaetopsis tabarestanensis (Cucurbitariaceae, Pleosporales), a new species isolated from rice farms in north Iran
    • Papizadeh, M., Soudi, M.R., Amini, L., Wijayawardene, N.N., Hyde, K.D., Pyrenochaetopsis tabarestanensis (Cucurbitariaceae, Pleosporales), a new species isolated from rice farms in north Iran. Phytotaxa 297 (2017), 15–28.
    • (2017) Phytotaxa , vol.297 , pp. 15-28
    • Papizadeh, M.1    Soudi, M.R.2    Amini, L.3    Wijayawardene, N.N.4    Hyde, K.D.5
  • 85
    • 0035430327 scopus 로고    scopus 로고
    • Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA gene-derived primers
    • Torriani, S., Felis, G.E., Dellaglio, F., Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA gene-derived primers. Appl. Environ. Microbiol. 67 (2001), 3450–3454.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3450-3454
    • Torriani, S.1    Felis, G.E.2    Dellaglio, F.3
  • 86
    • 0033012739 scopus 로고    scopus 로고
    • Lactic acid bacteria and the human gastrointestinal tract
    • Hove, H., Nørgaard, H., Mortensen, P.B., Lactic acid bacteria and the human gastrointestinal tract. Eur. J. Clin. Nutr. 53 (1999), 339–350.
    • (1999) Eur. J. Clin. Nutr. , vol.53 , pp. 339-350
    • Hove, H.1    Nørgaard, H.2    Mortensen, P.B.3
  • 88
    • 84969850668 scopus 로고    scopus 로고
    • Evaluation of potential probiotic characteristics and antibacterial effects of strains of Pediococcus species isolated from broiler chickens
    • Noohi, N., Ebrahimipour, G., Rohani, M., Talebi, M., Pourshafie, M., Evaluation of potential probiotic characteristics and antibacterial effects of strains of Pediococcus species isolated from broiler chickens. Br. Poult. Sci. 57 (2016), 317–323.
    • (2016) Br. Poult. Sci. , vol.57 , pp. 317-323
    • Noohi, N.1    Ebrahimipour, G.2    Rohani, M.3    Talebi, M.4    Pourshafie, M.5
  • 90
    • 84892690253 scopus 로고    scopus 로고
    • Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont
    • Frese, S.A., MacKenzie, D.A., Peterson, D.A., Schmaltz, R., Fangman, T., Zhou, Y., et al. Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont. PLoS Genet., 9, 2013, e1004057.
    • (2013) PLoS Genet. , vol.9 , pp. e1004057
    • Frese, S.A.1    MacKenzie, D.A.2    Peterson, D.A.3    Schmaltz, R.4    Fangman, T.5    Zhou, Y.6
  • 91
    • 50949114823 scopus 로고    scopus 로고
    • Comparative study of sugar fermentation and protein expression patterns of two Lactobacillus plantarum strains grown in three different media
    • Plumed-Ferrer, C., Koistinen, K.M., Tolonen, T.L., Lehesranta, S.J., Kärenlampi, S.O., Mäkimattila, E., et al. Comparative study of sugar fermentation and protein expression patterns of two Lactobacillus plantarum strains grown in three different media. Appl. Environ. Microbiol. 74 (2008), 5349–5358.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 5349-5358
    • Plumed-Ferrer, C.1    Koistinen, K.M.2    Tolonen, T.L.3    Lehesranta, S.J.4    Kärenlampi, S.O.5    Mäkimattila, E.6
  • 93
    • 84994812875 scopus 로고    scopus 로고
    • Lactobacillus plantarum BL011 cultivation in industrial isolated soybean protein acid residue
    • Coghetto, C.C., Vasconcelos, C.B., Brinques, G.B., Ayub, M.A.Z., Lactobacillus plantarum BL011 cultivation in industrial isolated soybean protein acid residue. Braz. J. Microbiol. 47 (2016), 941–948.
    • (2016) Braz. J. Microbiol. , vol.47 , pp. 941-948
    • Coghetto, C.C.1    Vasconcelos, C.B.2    Brinques, G.B.3    Ayub, M.A.Z.4
  • 95
    • 70349843268 scopus 로고    scopus 로고
    • Lactobacillus plantarum strains isolated from naturally fermented sausages and their technological properties for application as starter cultures
    • Sawitzki, M.C., Fiorentini, Â.M., Bertol, T.M., Sant'Anna, E.S., Lactobacillus plantarum strains isolated from naturally fermented sausages and their technological properties for application as starter cultures. Food Sci. Technol. (campinas) 29 (2009), 340–345.
    • (2009) Food Sci. Technol. (campinas) , vol.29 , pp. 340-345
    • Sawitzki, M.C.1    Fiorentini, Â.M.2    Bertol, T.M.3    Sant'Anna, E.S.4
  • 96
    • 50049098340 scopus 로고    scopus 로고
    • Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research
    • Walter, J., Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. Appl. Environ. Microbiol. 74 (2008), 4985–4996.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 4985-4996
    • Walter, J.1
  • 97
    • 67650904950 scopus 로고    scopus 로고
    • Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation
    • Teusink, B., Wiersma, A., Jacobs, L., Notebaart, R.A., Smid, E.J., Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation. PLoS Comput. Biol., 5, 2009, e1000410.
    • (2009) PLoS Comput. Biol. , vol.5 , pp. e1000410
    • Teusink, B.1    Wiersma, A.2    Jacobs, L.3    Notebaart, R.A.4    Smid, E.J.5
  • 98
    • 77953809541 scopus 로고    scopus 로고
    • Constraints and plasticity in genome and molecular-phenome evolution
    • Koonin, E.V., Wolf, Y.I., Constraints and plasticity in genome and molecular-phenome evolution. Nat. Rev. Genet. 11 (2010), 487–498.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 487-498
    • Koonin, E.V.1    Wolf, Y.I.2
  • 99
    • 83855165692 scopus 로고    scopus 로고
    • Extreme genome reduction in symbiotic bacteria
    • McCutcheon, J.P., Moran, N.A., Extreme genome reduction in symbiotic bacteria. Nat. Rev. Microbiol. 10 (2012), 13–26.
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 13-26
    • McCutcheon, J.P.1    Moran, N.A.2
  • 100
    • 84881612486 scopus 로고    scopus 로고
    • Genome reduction as the dominant mode of evolution
    • Wolf, Y.I., Koonin, E.V., Genome reduction as the dominant mode of evolution. Bioessays 35 (2013), 829–837.
    • (2013) Bioessays , vol.35 , pp. 829-837
    • Wolf, Y.I.1    Koonin, E.V.2
  • 102
    • 84880437408 scopus 로고    scopus 로고
    • Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity
    • Smokvina, T., Wels, M., Polka, J., Chervaux, C., Brisse, S., Boekhorst, J., et al. Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity. PLoS One, 8, 2013, e68731.
    • (2013) PLoS One , vol.8 , pp. e68731
    • Smokvina, T.1    Wels, M.2    Polka, J.3    Chervaux, C.4    Brisse, S.5    Boekhorst, J.6
  • 103
  • 104
    • 84948097260 scopus 로고    scopus 로고
    • Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean
    • Liu, C.-J., Wang, R., Gong, F.-M., Liu, X.-F., Zheng, H.-J., Luo, Y.-Y., et al. Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean. Genomics 106 (2015), 404–411.
    • (2015) Genomics , vol.106 , pp. 404-411
    • Liu, C.-J.1    Wang, R.2    Gong, F.-M.3    Liu, X.-F.4    Zheng, H.-J.5    Luo, Y.-Y.6
  • 105
    • 84938871968 scopus 로고    scopus 로고
    • Multifunctional properties of Lactobacillus plantarum strains isolated from fermented cereal foods
    • Oguntoyinbo, F.A., Narbad, A., Multifunctional properties of Lactobacillus plantarum strains isolated from fermented cereal foods. J. Funct. Foods 17 (2015), 621–631.
    • (2015) J. Funct. Foods , vol.17 , pp. 621-631
    • Oguntoyinbo, F.A.1    Narbad, A.2
  • 106
    • 1642441286 scopus 로고    scopus 로고
    • Engineering metabolic highways in lactococci and other lactic acid bacteria
    • De Vos, W.M., Hugenholtz, J., Engineering metabolic highways in lactococci and other lactic acid bacteria. Trends Biotechnol. 22 (2004), 72–79.
    • (2004) Trends Biotechnol. , vol.22 , pp. 72-79
    • De Vos, W.M.1    Hugenholtz, J.2
  • 107
  • 108
    • 25844476154 scopus 로고    scopus 로고
    • Survival, growth and persistence under farm conditions of a Lactobacillus plantarum strain inoculated into liquid pig feed
    • Plumed-Ferrer, C., Kivelä, I., Hyvönen, P., Wright, Av, Survival, growth and persistence under farm conditions of a Lactobacillus plantarum strain inoculated into liquid pig feed. J. Appl. Microbiol. 99 (2005), 851–858.
    • (2005) J. Appl. Microbiol. , vol.99 , pp. 851-858
    • Plumed-Ferrer, C.1    Kivelä, I.2    Hyvönen, P.3    Wright, A.4
  • 110
    • 15844429408 scopus 로고    scopus 로고
    • Survival of the probiotic, L. plantarum 299v and its effects on the faecal bacterial flora, with and without gastric acid inhibition
    • Goossens, D., Jonkers, D., Russel, M., Thijs, A., Van Den Bogaard, A., Stobberingh, E., et al. Survival of the probiotic, L. plantarum 299v and its effects on the faecal bacterial flora, with and without gastric acid inhibition. Dig. Liver Dis. 37 (2005), 44–50.
    • (2005) Dig. Liver Dis. , vol.37 , pp. 44-50
    • Goossens, D.1    Jonkers, D.2    Russel, M.3    Thijs, A.4    Van Den Bogaard, A.5    Stobberingh, E.6
  • 111
    • 15344342156 scopus 로고    scopus 로고
    • A prospective randomised trial of probiotics in critically ill patients
    • McNaught, C.E., Woodcock, N.P., Anderson, A.D., MacFie, J., A prospective randomised trial of probiotics in critically ill patients. Clin. Nutr. 24 (2005), 211–219.
    • (2005) Clin. Nutr. , vol.24 , pp. 211-219
    • McNaught, C.E.1    Woodcock, N.P.2    Anderson, A.D.3    MacFie, J.4
  • 112
    • 0033781867 scopus 로고    scopus 로고
    • Adaptation of the nisin-controlled expression system in Lactobacillus plantarum: a tool to study in vivo biological effects
    • Pavan, S., Hols, P., Delcour, J., Geoffroy, M.-C., Grangette, C., Kleerebezem, M., et al. Adaptation of the nisin-controlled expression system in Lactobacillus plantarum: a tool to study in vivo biological effects. Appl. Environ. Microbiol. 66 (2000), 4427–4432.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4427-4432
    • Pavan, S.1    Hols, P.2    Delcour, J.3    Geoffroy, M.-C.4    Grangette, C.5    Kleerebezem, M.6
  • 114
    • 77649184449 scopus 로고    scopus 로고
    • Lactobacillus plantarum–a literature review of therapeutic benefits
    • Connelly, P., Lactobacillus plantarum–a literature review of therapeutic benefits. J. Aust. Traditional-Medicine Soc. 14 (2008), 79–83.
    • (2008) J. Aust. Traditional-Medicine Soc. , vol.14 , pp. 79-83
    • Connelly, P.1
  • 115
    • 84895734985 scopus 로고    scopus 로고
    • Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment
    • Mendes-Soares, H., Suzuki, H., Hickey, R.J., Forney, L.J., Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment. J. Bacteriol. 196 (2014), 1458–1470.
    • (2014) J. Bacteriol. , vol.196 , pp. 1458-1470
    • Mendes-Soares, H.1    Suzuki, H.2    Hickey, R.J.3    Forney, L.J.4
  • 117
    • 84860378445 scopus 로고    scopus 로고
    • Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations
    • Caffrey, B.E., Williams, T.A., Jiang, X., Toft, C., Hokamp, K., Fares, M.A., Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations. PloS One, 7, 2012, e35659.
    • (2012) PloS One , vol.7 , pp. e35659
    • Caffrey, B.E.1    Williams, T.A.2    Jiang, X.3    Toft, C.4    Hokamp, K.5    Fares, M.A.6
  • 118
    • 84874750499 scopus 로고    scopus 로고
    • Health-promoting properties of Lactobacillus helveticus. Frontiers in microbiology
    • Taverniti, V., Guglielmetti, S., Health-promoting properties of Lactobacillus helveticus. Frontiers in microbiology., 3, 2012, 392.
    • (2012) , vol.3 , pp. 392
    • Taverniti, V.1    Guglielmetti, S.2
  • 119
    • 85008124093 scopus 로고
    • Antihypertensive effects of different kinds of fermented milk in spontaneously hypertensive rats
    • Yamamoto, N., Akino, A., Takano, T., Antihypertensive effects of different kinds of fermented milk in spontaneously hypertensive rats. Biosci. Biotechnol. Biochem. 58 (1994), 776–778.
    • (1994) Biosci. Biotechnol. Biochem. , vol.58 , pp. 776-778
    • Yamamoto, N.1    Akino, A.2    Takano, T.3
  • 121
    • 0029395057 scopus 로고
    • Comparison of proteolytic activities in various lactobacilli
    • Sasaki, M., Bosman, B.W., Tan, P.S., Comparison of proteolytic activities in various lactobacilli. J. Dairy Res. 62 (1995), 601–610.
    • (1995) J. Dairy Res. , vol.62 , pp. 601-610
    • Sasaki, M.1    Bosman, B.W.2    Tan, P.S.3
  • 122
    • 33749388946 scopus 로고    scopus 로고
    • Extraction and partial characterization of proteolytic activities from the cell surface of Lactobacillus helveticus Zuc2
    • Scolari, G., Vescovo, M., Zacconi, C., Vescovi, F., Extraction and partial characterization of proteolytic activities from the cell surface of Lactobacillus helveticus Zuc2. J. Dairy Sci. 89 (2006), 3800–3809.
    • (2006) J. Dairy Sci. , vol.89 , pp. 3800-3809
    • Scolari, G.1    Vescovo, M.2    Zacconi, C.3    Vescovi, F.4
  • 123
    • 85028002588 scopus 로고
    • The characteristics of the lactic acid bacteria isolated from moto, yeast mashes for saké manufacture: Part. I: the fermentation products from koji extract Part II: observation of fermentable sugars and some cultural conditions Part III: the fermentation products from pentoses and hexoses Part IV: the classification of the lactic acid bacteria
    • Katagiri, H., Kitahara, K., Fukami, K., Sugase, M., The characteristics of the lactic acid bacteria isolated from moto, yeast mashes for saké manufacture: Part. I: the fermentation products from koji extract Part II: observation of fermentable sugars and some cultural conditions Part III: the fermentation products from pentoses and hexoses Part IV: the classification of the lactic acid bacteria. J. Agric. Chem. Soc. Jpn. 10 (1934), 153–157.
    • (1934) J. Agric. Chem. Soc. Jpn. , vol.10 , pp. 153-157
    • Katagiri, H.1    Kitahara, K.2    Fukami, K.3    Sugase, M.4
  • 124
    • 0036693743 scopus 로고    scopus 로고
    • Discovering Lactic Acid Bacteria by Genomics. Lactic Acid Bacteria: Genetics, Metabolism and Applications
    • Springer
    • Klaenhammer, T., Altermann, E., Arigoni, F., Bolotin, A., Breidt, F., Broadbent, J., et al. Discovering Lactic Acid Bacteria by Genomics. Lactic Acid Bacteria: Genetics, Metabolism and Applications. 2002, Springer, 29–58.
    • (2002) , pp. 29-58
    • Klaenhammer, T.1    Altermann, E.2    Arigoni, F.3    Bolotin, A.4    Breidt, F.5    Broadbent, J.6
  • 125
    • 0032488570 scopus 로고    scopus 로고
    • Study of the microbial ecology of cold-smoked salmon during storage at 8 C
    • Leroi, F., Joffraud, J.-J., Chevalier, F., Cardinal, M., Study of the microbial ecology of cold-smoked salmon during storage at 8 C. Int. J. Food Microbiol. 39 (1998), 111–121.
    • (1998) Int. J. Food Microbiol. , vol.39 , pp. 111-121
    • Leroi, F.1    Joffraud, J.-J.2    Chevalier, F.3    Cardinal, M.4
  • 127
    • 0008104655 scopus 로고    scopus 로고
    • Lactic Acid Bacteria. Applied Microbial Systematics
    • Springer
    • Axelsson, L., Ahrné, S., Lactic Acid Bacteria. Applied Microbial Systematics. 2000, Springer, 367–388.
    • (2000) , pp. 367-388
    • Axelsson, L.1    Ahrné, S.2
  • 128
    • 67649598014 scopus 로고    scopus 로고
    • Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice
    • Chiaramonte, F., Blugeon, S., Chaillou, S., Langella, P., Zagorec, M., Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice. Appl. Environ. Microbiol. 75 (2009), 4498–4505.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4498-4505
    • Chiaramonte, F.1    Blugeon, S.2    Chaillou, S.3    Langella, P.4    Zagorec, M.5
  • 130
    • 59949102232 scopus 로고    scopus 로고
    • Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei
    • Chaillou, S., Daty, M., Baraige, F., Dudez, A.-M., Anglade, P., Jones, R., et al. Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei. Appl. Environ. Microbiol. 75 (2009), 970–980.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 970-980
    • Chaillou, S.1    Daty, M.2    Baraige, F.3    Dudez, A.-M.4    Anglade, P.5    Jones, R.6
  • 132
    • 0035580339 scopus 로고    scopus 로고
    • Adaptation of Lactobacillus sakei to meat: a new regulatory mechanism of ribose utilization?
    • Stentz, R., Cornet, M., Chaillou, S., Zagorec, M., Adaptation of Lactobacillus sakei to meat: a new regulatory mechanism of ribose utilization?. Le. Lait. 81 (2001), 131–138.
    • (2001) Le. Lait. , vol.81 , pp. 131-138
    • Stentz, R.1    Cornet, M.2    Chaillou, S.3    Zagorec, M.4
  • 133
    • 54849164200 scopus 로고    scopus 로고
    • Diversity of Lactobacillus sakei strains investigated by phenotypic and genotypic methods
    • McLeod, A., Nyquist, O.L., Snipen, L., Naterstad, K., Axelsson, L., Diversity of Lactobacillus sakei strains investigated by phenotypic and genotypic methods. Syst. Appl. Microbiol. 31 (2008), 393–403.
    • (2008) Syst. Appl. Microbiol. , vol.31 , pp. 393-403
    • McLeod, A.1    Nyquist, O.L.2    Snipen, L.3    Naterstad, K.4    Axelsson, L.5
  • 134
    • 84884381841 scopus 로고    scopus 로고
    • Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories
    • Chaillou, S., Lucquin, I., Najjari, A., Zagorec, M., Champomier-Vergès, M.-C., Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories. PLoS One, 8, 2013, e73253.
    • (2013) PLoS One , vol.8 , pp. e73253
    • Chaillou, S.1    Lucquin, I.2    Najjari, A.3    Zagorec, M.4    Champomier-Vergès, M.-C.5
  • 135
    • 84884948631 scopus 로고    scopus 로고
    • Genomic and phenotypic evidence for probiotic influences of Lactobacillus gasseri on human health
    • Selle, K., Klaenhammer, T.R., Genomic and phenotypic evidence for probiotic influences of Lactobacillus gasseri on human health. FEMS Microbiol. Rev. 37 (2013), 915–935.
    • (2013) FEMS Microbiol. Rev. , vol.37 , pp. 915-935
    • Selle, K.1    Klaenhammer, T.R.2
  • 137
    • 84858006569 scopus 로고    scopus 로고
    • Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera
    • Lukjancenko, O., Ussery, D.W., Wassenaar, T.M., Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microb. Ecol. 63 (2012), 651–673.
    • (2012) Microb. Ecol. , vol.63 , pp. 651-673
    • Lukjancenko, O.1    Ussery, D.W.2    Wassenaar, T.M.3
  • 141
    • 85028000989 scopus 로고    scopus 로고
    • Comparative phylogeny of the genus Bordetella using sequence analysis of 16S rRNA and ompA genes
    • (In Press)
    • Badamchi, A., Papizadeh, M., Comparative phylogeny of the genus Bordetella using sequence analysis of 16S rRNA and ompA genes. J. Med. Bacteriol., 6(3–4), 2017 (In Press).
    • (2017) J. Med. Bacteriol. , vol.6 , Issue.3-4
    • Badamchi, A.1    Papizadeh, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.