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Volumn 4, Issue 3, 2011, Pages 323-332

Comparative genomics of Lactobacillus

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PROBIOTIC AGENT;

EID: 79955382523     PISSN: 17517907     EISSN: 17517915     Source Type: Journal    
DOI: 10.1111/j.1751-7915.2010.00215.x     Document Type: Article
Times cited : (114)

References (51)
  • 3
    • 49449090704 scopus 로고    scopus 로고
    • Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism
    • Azcarate-Peril, M.A., Altermann, E., Goh, Y.J., Tallon, R., Sanozky-Dawes, R.B., Pfeiler, E.A., etal. (2008) Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism. Appl Environ Microbiol 15: 4610-4625.
    • (2008) Appl Environ Microbiol , vol.15 , pp. 4610-4625
    • Azcarate-Peril, M.A.1    Altermann, E.2    Goh, Y.J.3    Tallon, R.4    Sanozky-Dawes, R.B.5    Pfeiler, E.A.6
  • 5
    • 21844433171 scopus 로고    scopus 로고
    • Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs
    • Boekhorst, J., de Been, M.W., Kleerebezem, M., and Siezen, R.J. (2005) Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs. J Bacteriol 14: 4928-4934.
    • (2005) J Bacteriol , vol.14 , pp. 4928-4934
    • Boekhorst, J.1    de Been, M.W.2    Kleerebezem, M.3    Siezen, R.J.4
  • 6
    • 4344567816 scopus 로고    scopus 로고
    • Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice
    • Bron, P.A., Grangette, C., Mercenier, A., de Vos, W.M., and Kleerebezem, M. (2004) Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J Bacteriol 17: 5721-5729.
    • (2004) J Bacteriol , vol.17 , pp. 5721-5729
    • Bron, P.A.1    Grangette, C.2    Mercenier, A.3    de Vos, W.M.4    Kleerebezem, M.5
  • 8
    • 38749115890 scopus 로고    scopus 로고
    • Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion
    • Callanan, M., Kaleta, P., O'Callaghan, J., O'Sullivan, O., Jordan, K., McAuliffe, O., etal. (2008) Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. J Bacteriol 2: 727-735.
    • (2008) J Bacteriol , vol.2 , pp. 727-735
    • Callanan, M.1    Kaleta, P.2    O'Callaghan, J.3    O'Sullivan, O.4    Jordan, K.5    McAuliffe, O.6
  • 9
    • 33750950813 scopus 로고    scopus 로고
    • Diversity of the genus Lactobacillus revealed by comparative genomics of five species
    • Canchaya, C., Claesson, M.J., Fitzgerald, G.F., van Sinderen, D., and O'Toole, P.W. (2006) Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology 152: 3185-3196.
    • (2006) Microbiology , vol.152 , pp. 3185-3196
    • Canchaya, C.1    Claesson, M.J.2    Fitzgerald, G.F.3    van Sinderen, D.4    O'Toole, P.W.5
  • 11
    • 33847673288 scopus 로고    scopus 로고
    • The genus Lactobacillus - a genomic basis for understanding its diversity
    • Claesson, M.J., van Sinderen, D., and O'Toole, P.W. (2007) The genus Lactobacillus - a genomic basis for understanding its diversity. FEMS Microbiol Lett 1: 22-28.
    • (2007) FEMS Microbiol Lett , vol.1 , pp. 22-28
    • Claesson, M.J.1    van Sinderen, D.2    O'Toole, P.W.3
  • 12
    • 58949102552 scopus 로고    scopus 로고
    • Lactobacillus phylogenomics -towards a reclassification of the genus
    • Claesson, M.J., van Sinderen, D., and O'Toole, P.W. (2008) Lactobacillus phylogenomics -towards a reclassification of the genus. Int J Syst Evol Microbiol 58: 2945-2954.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2945-2954
    • Claesson, M.J.1    van Sinderen, D.2    O'Toole, P.W.3
  • 13
    • 0028106317 scopus 로고
    • Cloning, sequencing, and expression of a fibronectin/fibrinogen-binding protein from group A streptococci
    • Courtney, H.S., Li, Y., Dale, J.B., and Hasty, D.L. (1994) Cloning, sequencing, and expression of a fibronectin/fibrinogen-binding protein from group A streptococci. Infect Immun 9: 3937-3946.
    • (1994) Infect Immun , vol.9 , pp. 3937-3946
    • Courtney, H.S.1    Li, Y.2    Dale, J.B.3    Hasty, D.L.4
  • 14
    • 33646739322 scopus 로고    scopus 로고
    • Strong antimicrobial activity of Lactobacillus rhamnosus GG against Salmonella typhimurium is due to accumulation of lactic acid
    • De Keersmaecker, S.C., Verhoeven, T.L., Desair, J., Marchal, K., Vanderleyden, J., and Nagy, I. (2006) Strong antimicrobial activity of Lactobacillus rhamnosus GG against Salmonella typhimurium is due to accumulation of lactic acid. FEMS Microbiol Lett 259: 89-96.
    • (2006) FEMS Microbiol Lett , vol.259 , pp. 89-96
    • De Keersmaecker, S.C.1    Verhoeven, T.L.2    Desair, J.3    Marchal, K.4    Vanderleyden, J.5    Nagy, I.6
  • 15
    • 23344436510 scopus 로고    scopus 로고
    • Lipotechoic acid in lactobacilli: d-alanine makes the difference
    • De Vos, W.M. (2005) Lipotechoic acid in lactobacilli: d-alanine makes the difference. Proc Natl Acad Sci USA 102: 10763-10764.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 10763-10764
    • De Vos, W.M.1
  • 16
    • 33750958590 scopus 로고    scopus 로고
    • Taxonomy of Lactobacillus and bifidobacteria.
    • In Tannock, G.W. (ed.). Wymondham, UK: Caister Academic Press.
    • Dellaglio, F., and Felis, G.E. (2005) Taxonomy of Lactobacillus and bifidobacteria. In Probiotics and Prebiotics: Scientific Aspects. Tannock, G.W. (ed.). Wymondham, UK: Caister Academic Press, pp. 25-49.
    • (2005) Probiotics and Prebiotics: Scientific Aspects , pp. 25-49
    • Dellaglio, F.1    Felis, G.E.2
  • 17
    • 33747452065 scopus 로고    scopus 로고
    • Lactobacillus plantarum - survival, functional and potential probiotic properties in the human intestinal tract
    • De-Vries, M.C., Vaughan, E.E., Kleerebezem, M., and de Vos, W.M. (2006) Lactobacillus plantarum - survival, functional and potential probiotic properties in the human intestinal tract. Int Dairy J 16: 1018-1028.
    • (2006) Int Dairy J , vol.16 , pp. 1018-1028
    • De-Vries, M.C.1    Vaughan, E.E.2    Kleerebezem, M.3    de Vos, W.M.4
  • 18
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792
    • Edgar, R.C.1
  • 19
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP, and related tools
    • Emanuelsson, O., Brunak, S., von Heijne, G., and Nielsen, H. (2007) Locating proteins in the cell using TargetP, SignalP, and related tools. Nat Protoc 2: 953-971.
    • (2007) Nat Protoc , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 20
    • 0003437299 scopus 로고
    • Version 3.57 c. Seattle, WA, USA: Department of Genetics, University of Washington.
    • Felsenstein, J. (1995) PHYLIP (Phylogeny Inference Package). Version 3.57 c. Seattle, WA, USA: Department of Genetics, University of Washington.
    • (1995) PHYLIP (Phylogeny Inference Package)
    • Felsenstein, J.1
  • 21
    • 0026722016 scopus 로고
    • Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981)
    • Fujisawa, T., Benno, Y., Yaeshima, T., and Mitsuoka, T. (1992) Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson etal. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). Int J Syst Bacteriol 42: 487-491.
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 487-491
    • Fujisawa, T.1    Benno, Y.2    Yaeshima, T.3    Mitsuoka, T.4
  • 22
    • 33745128028 scopus 로고    scopus 로고
    • The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution
    • van de Guchte, M., Penaud, S., Grimaldi, C., Barbe, V., Bryson, K., Nicolas, P., etal. (2006) The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc Natl Acad Sci USA 24: 9274-9279.
    • (2006) Proc Natl Acad Sci USA , vol.24 , pp. 9274-9279
    • van de Guchte, M.1    Penaud, S.2    Grimaldi, C.3    Barbe, V.4    Bryson, K.5    Nicolas, P.6
  • 23
    • 0001835490 scopus 로고
    • The genus Lactobacillus
    • In, Wood, B.J.B., and Holzapfel, W.H. (eds). Glasgow, UK: Blackie Academic & Professional -
    • Hammes, W.P., and Vogel, R.F. (1995) The genus Lactobacillus. In The Genera of Lactic Acid Bacteria, Vol. 2. Wood, B.J.B., and Holzapfel, W.H. (eds). Glasgow, UK: Blackie Academic & Professional, pp. 19-54.
    • (1995) The Genera of Lactic Acid Bacteria , vol.2 , pp. 19-54
    • Hammes, W.P.1    Vogel, R.F.2
  • 25
    • 70350134948 scopus 로고    scopus 로고
    • Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein
    • Kankainen, M., Paulin, L., Tynkkynen, S., von Ossowski, I., Reunanen, J., Partanen, P., etal. (2009) Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein. Proc Natl Acad Sci USA 40: 17193-17198.
    • (2009) Proc Natl Acad Sci USA , vol.40 , pp. 17193-17198
    • Kankainen, M.1    Paulin, L.2    Tynkkynen, S.3    von Ossowski, I.4    Reunanen, J.5    Partanen, P.6
  • 28
    • 35648957713 scopus 로고    scopus 로고
    • Involvement of the detoxifying enzyme lactoylglutathione lyase in Streptococcus mutans aciduricity
    • Korithoski, B., Lévesque, C.M., and Cvitkovitch, D.G. (2007) Involvement of the detoxifying enzyme lactoylglutathione lyase in Streptococcus mutans aciduricity. J Bacteriol 189: 7586-7592.
    • (2007) J Bacteriol , vol.189 , pp. 7586-7592
    • Korithoski, B.1    Lévesque, C.M.2    Cvitkovitch, D.G.3
  • 29
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria
    • Lerat, E., Daubin, V., and Moran, N.A. (2003) From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria. PLoS Biol 1: E19.
    • (2003) PLoS Biol , vol.1
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 31
    • 77958455790 scopus 로고    scopus 로고
    • Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice
    • (in press): doi:10.1038/ismej.2010.61.
    • Marco, M.L., de Vries, M.C., Wels, M., Molenaar, D., Mangell, P., Ahrne, S., etal. (2010) Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice. ISME J (in press): doi:10.1038/ismej.2010.61.
    • (2010) ISME J
    • Marco, M.L.1    de Vries, M.C.2    Wels, M.3    Molenaar, D.4    Mangell, P.5    Ahrne, S.6
  • 32
    • 77952081524 scopus 로고    scopus 로고
    • Complete genome sequence of the probiotic Lactobacillus casei strain BL23
    • Mazé, A., Boël, G., Zúñiga, M., Bourand, A., Loux, V., Yebra, M.J., etal. (2010) Complete genome sequence of the probiotic Lactobacillus casei strain BL23. J Bacteriol 10: 2647-2648.
    • (2010) J Bacteriol , vol.10 , pp. 2647-2648
    • Mazé, A.1    Boël, G.2    Zúñiga, M.3    Bourand, A.4    Loux, V.5    Yebra, M.J.6
  • 34
    • 0033060731 scopus 로고
    • Characterization of a prolidase from Lactobacillus delbrueckii subsp. bulgaricus CNRZ 397 with an unusual regulation of biosynthesis
    • Morel, F., Frot-Coutaz, J., Aubel, D., Portalier, R., and Atlan, D. (1990) Characterization of a prolidase from Lactobacillus delbrueckii subsp. bulgaricus CNRZ 397 with an unusual regulation of biosynthesis. Microbiology 145: 437-446.
    • (1990) Microbiology , vol.145 , pp. 437-446
    • Morel, F.1    Frot-Coutaz, J.2    Aubel, D.3    Portalier, R.4    Atlan, D.5
  • 35
    • 56049119880 scopus 로고    scopus 로고
    • Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production
    • Morita, H., Toh, H., Fukuda, S., Horikawa, H., Oshima, K., Suzuki, T., etal. (2008) Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production. DNA Res 3: 151-161.
    • (2008) DNA Res , vol.3 , pp. 151-161
    • Morita, H.1    Toh, H.2    Fukuda, S.3    Horikawa, H.4    Oshima, K.5    Suzuki, T.6
  • 36
    • 77953050946 scopus 로고    scopus 로고
    • A catalog of reference genomes from the human microbiome
    • Human Microbiome Jumpstart Reference Strains Consortium.
    • Nelson, K.E., Weinstock, G.M., Highlander, S.K., Worley, K.C., Creasy, H.H., Wortman, J.R., etal., Human Microbiome Jumpstart Reference Strains Consortium (2010) A catalog of reference genomes from the human microbiome. Science 5981: 994-999.
    • (2010) Science , vol.5981 , pp. 994-999
    • Nelson, K.E.1    Weinstock, G.M.2    Highlander, S.K.3    Worley, K.C.4    Creasy, H.H.5    Wortman, J.R.6
  • 42
    • 0032740962 scopus 로고    scopus 로고
    • PepR1, a CcpA-like transcription regulator of Lactobacillus delbrueckii subsp. lactis
    • Schick, J., Weber, B., Klein, J.R., and Henrich, B. (1999) PepR1, a CcpA-like transcription regulator of Lactobacillus delbrueckii subsp. lactis. Microbiology 145: 3147-3154.
    • (1999) Microbiology , vol.145 , pp. 3147-3154
    • Schick, J.1    Weber, B.2    Klein, J.R.3    Henrich, B.4
  • 43
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera, G., and Castresana, J. (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56: 564-577.
    • (2007) Syst Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 44
    • 2942556635 scopus 로고    scopus 로고
    • A special fondness for lactobacilli
    • Tannock, G.W. (2004) A special fondness for lactobacilli. Appl Environ Microbiol 70: 3189-3194.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3189-3194
    • Tannock, G.W.1
  • 45
    • 1642441286 scopus 로고    scopus 로고
    • Engineering metabolic highways in Lactococci and other lactic acid bacteria
    • de Vos, W.M., and Hugenholtz, J. (2004) Engineering metabolic highways in Lactococci and other lactic acid bacteria. Trends Biotechnol 22: 72-79.
    • (2004) Trends Biotechnol , vol.22 , pp. 72-79
    • de Vos, W.M.1    Hugenholtz, J.2
  • 46
    • 70350468848 scopus 로고    scopus 로고
    • Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry
    • Wegmann, U., Overweg, K., Horn, N., Goesmann, A., Narbad, A., Gasson, M.J., and Shearman, C. (2009) Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry. J Bacteriol 22: 7142-7143.
    • (2009) J Bacteriol , vol.22 , pp. 7142-7143
    • Wegmann, U.1    Overweg, K.2    Horn, N.3    Goesmann, A.4    Narbad, A.5    Gasson, M.J.6    Shearman, C.7
  • 49
    • 33845670418 scopus 로고    scopus 로고
    • Quantification of insect genome divergence
    • Zdobnov, E.M., and Bork, P. (2007) Quantification of insect genome divergence. Trends Genet 23: 16-20.
    • (2007) Trends Genet , vol.23 , pp. 16-20
    • Zdobnov, E.M.1    Bork, P.2
  • 50
    • 67749119792 scopus 로고    scopus 로고
    • Complete genome sequence of Lactobacillus plantarum JDM1
    • Zhang, Z.Y., Liu, C., Zhu, Y.Z., Zhong, Y., Zhu, Y.Q., Zheng, H.J., etal. (2009) Complete genome sequence of Lactobacillus plantarum JDM1. J Bacteriol 15: 5020-5021.
    • (2009) J Bacteriol , vol.15 , pp. 5020-5021
    • Zhang, Z.Y.1    Liu, C.2    Zhu, Y.Z.3    Zhong, Y.4    Zhu, Y.Q.5    Zheng, H.J.6
  • 51
    • 42549137778 scopus 로고    scopus 로고
    • LocateP: genome-scale subcellular-location predictor for bacterial proteins
    • Zhou, M., Boekhorst, J., Francke, C., and Siezen, R.J. (2008) LocateP: genome-scale subcellular-location predictor for bacterial proteins. BMC Bioinformatics 9: 173.
    • (2008) BMC Bioinformatics , vol.9 , pp. 173
    • Zhou, M.1    Boekhorst, J.2    Francke, C.3    Siezen, R.J.4


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