메뉴 건너뛰기




Volumn 8, Issue 9, 2000, Pages 396-401

Intraspecies variation in bacterial genomes: The need for a species genome concept

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; O ANTIGEN;

EID: 0034283229     PISSN: 0966842X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0966-842X(00)01791-1     Document Type: Review
Times cited : (199)

References (41)
  • 1
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner, F.R. et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1474
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1
  • 2
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • Tomb, J.F. et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539-547
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.F.1
  • 3
    • 0033552961 scopus 로고    scopus 로고
    • Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
    • Alm, R.A. et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397, 176-180
    • (1999) Nature , vol.397 , pp. 176-180
    • Alm, R.A.1
  • 4
    • 0034629478 scopus 로고    scopus 로고
    • Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
    • Tettelin, H. et al. (2000) Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science 287, 1809-1815
    • (2000) Science , vol.287 , pp. 1809-1815
    • Tettelin, H.1
  • 5
    • 0034732226 scopus 로고    scopus 로고
    • Complete DNA sequence of a serogroup a strain of Neisseria meningitidis Z2491
    • Parkhill, J. et al. (2000) Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491. Nature 404, 502-506
    • (2000) Nature , vol.404 , pp. 502-506
    • Parkhill, J.1
  • 6
    • 0029790360 scopus 로고    scopus 로고
    • Highly plastic chromosomal organization in Salmonella typhi
    • Liu, S-L. and Sanderson, K.E. (1996) Highly plastic chromosomal organization in Salmonella typhi. Proc. Natl. Acad. Sci. U. S. A. 93, 10303-10308
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 10303-10308
    • Liu, S.-L.1    Sanderson, K.E.2
  • 7
    • 0031942498 scopus 로고    scopus 로고
    • Chromosome geometry and intraspecific genetic polymorphism in Gram-positive bacteria revealed by pulsed-field gel electrophoresis
    • Leblond, P. and Decaris, B. (1998) Chromosome geometry and intraspecific genetic polymorphism in Gram-positive bacteria revealed by pulsed-field gel electrophoresis. Electrophoresis 19, 582-588
    • (1998) Electrophoresis , vol.19 , pp. 582-588
    • Leblond, P.1    Decaris, B.2
  • 8
    • 0028841353 scopus 로고
    • New tools for integrated genetic and physical analysis of the Escherichia coli chromosome
    • Rode, C.K. et al. (1995) New tools for integrated genetic and physical analysis of the Escherichia coli chromosome. Gene 166, 1-9
    • (1995) Gene , vol.166 , pp. 1-9
    • Rode, C.K.1
  • 9
    • 0025236912 scopus 로고
    • Genomic subtraction for cloning DNA corresponding to deletion mutations
    • Straus, D. and Ausubel, F.M. (1990) Genomic subtraction for cloning DNA corresponding to deletion mutations. Proc. Natl. Acad. Sci. U. S. A. 87, 1889-1893
    • (1990) Proc. Natl. Acad. Sci. U. S. A. , vol.87 , pp. 1889-1893
    • Straus, D.1    Ausubel, F.M.2
  • 10
    • 0032573069 scopus 로고    scopus 로고
    • PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori
    • Akopyants, N.S. et al. (1998) PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori. Proc. Natl. Acad. Sci. U. S. A. 95, 13108-13113
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 13108-13113
    • Akopyants, N.S.1
  • 11
    • 0030031267 scopus 로고    scopus 로고
    • Gene transfer is a major factor in bacterial evolution
    • Lan, R. and Reeves, P.R. (1996) Gene transfer is a major factor in bacterial evolution. Mol. Biol. Evol. 13, 47-55
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 47-55
    • Lan, R.1    Reeves, P.R.2
  • 12
    • 0033612136 scopus 로고    scopus 로고
    • Comparative genomics of BCG vaccines by whole-genome DNA microarray
    • Behr, M.A. et al. (1999) Comparative genomics of BCG vaccines by whole-genome DNA microarray. Science 284, 1520-1523
    • (1999) Science , vol.284 , pp. 1520-1523
    • Behr, M.A.1
  • 13
    • 0033612331 scopus 로고    scopus 로고
    • TB vaccines: Global solutions for global problems
    • Young, D.B. and Robertson, B.D. (1999) TB vaccines: global solutions for global problems. Science 284, 1479-1480
    • (1999) Science , vol.284 , pp. 1479-1480
    • Young, D.B.1    Robertson, B.D.2
  • 15
    • 0029780693 scopus 로고    scopus 로고
    • Unique chromosomal regions associated with virulence of an avian pathogenic Escherichia coli strain
    • Brown, P. and Curtiss, R. (1996) Unique chromosomal regions associated with virulence of an avian pathogenic Escherichia coli strain. Proc. Natl. Acad. Sci. U. S. A. 93, 11149-11154
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 11149-11154
    • Brown, P.1    Curtiss, R.2
  • 16
    • 0032944215 scopus 로고    scopus 로고
    • Type-specific contribution to chromosome size differences in Escherichia coli
    • Rode, C.K. et al. (1999) Type-specific contribution to chromosome size differences in Escherichia coli. Infect. Immun. 67, 230-236
    • (1999) Infect. Immun. , vol.67 , pp. 230-236
    • Rode, C.K.1
  • 17
    • 0030901705 scopus 로고    scopus 로고
    • Pathogenicity islands of virulent bacteria: Structure, function and impact on microbial evolution
    • Hacker, J. et al. (1997) Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol. Microbiol. 23, 1089-1097
    • (1997) Mol. Microbiol. , vol.23 , pp. 1089-1097
    • Hacker, J.1
  • 18
    • 0343884763 scopus 로고    scopus 로고
    • Comparative genomics of E. coli K-12, O157:H7 and related enterobacterial pathogens
    • ASM Press
    • Perna, N.T. et al. (1998) Comparative genomics of E. coli K-12, O157:H7 and related enterobacterial pathogens. In ASM Conference on Small Genomes, p. 7, ASM Press
    • (1998) ASM Conference on Small Genomes , pp. 7
    • Perna, N.T.1
  • 19
    • 0031963154 scopus 로고    scopus 로고
    • Distribution of chromosome length variation in natural isolates of Escherichia coli
    • Bergthorsson, U. and Ochman, H. (1998) Distribution of chromosome length variation in natural isolates of Escherichia coli. Mol. Biol. Evol. 15, 6-16
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 6-16
    • Bergthorsson, U.1    Ochman, H.2
  • 20
    • 0031885976 scopus 로고    scopus 로고
    • Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution
    • Boyd, E.F. and Hartl, D.L. (1998) Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. J. Bacteriol. 180, 1159-1165
    • (1998) J. Bacteriol. , vol.180 , pp. 1159-1165
    • Boyd, E.F.1    Hartl, D.L.2
  • 21
    • 0027121374 scopus 로고
    • Variation in O antigens, niche-specific selection and bacterial populations
    • Reeves, P.R. (1992) Variation in O antigens, niche-specific selection and bacterial populations. FEMS Microbiol. Lett. 100, 509-516
    • (1992) FEMS Microbiol. Lett. , vol.100 , pp. 509-516
    • Reeves, P.R.1
  • 22
    • 0342378138 scopus 로고    scopus 로고
    • The record of horizontal gene transfer in Salmonella
    • Baumler, A.J. (1997) The record of horizontal gene transfer in Salmonella. Trends Microbiol. 5, 318-322
    • (1997) Trends Microbiol. , vol.5 , pp. 318-322
    • Baumler, A.J.1
  • 23
    • 0028920524 scopus 로고
    • A 40-kb chromosomal fragment encoding Salmonella typhimurium invasion genes is absent from the corresponding region of the Escherichia coli K-12 chromosome
    • Mills, D.M. et al. (1995) A 40-kb chromosomal fragment encoding Salmonella typhimurium invasion genes is absent from the corresponding region of the Escherichia coli K-12 chromosome. Mol. Microbiol. 15, 749-759
    • (1995) Mol. Microbiol. , vol.15 , pp. 749-759
    • Mills, D.M.1
  • 24
    • 0029852315 scopus 로고    scopus 로고
    • Distribution of pathogenicity islands in Salmonella spp
    • Ochman, H. and Groisman, E.A. (1996) Distribution of pathogenicity islands in Salmonella spp. Infect. Immun. 64, 5410-5412
    • (1996) Infect. Immun. , vol.64 , pp. 5410-5412
    • Ochman, H.1    Groisman, E.A.2
  • 25
    • 0031053290 scopus 로고    scopus 로고
    • Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12
    • Hensel, M. et al. (1997) Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12. J. Bacteriol. 179, 1105-1111
    • (1997) J. Bacteriol. , vol.179 , pp. 1105-1111
    • Hensel, M.1
  • 26
    • 0032916707 scopus 로고    scopus 로고
    • The SPI-3 pathogenicity island of Salmonella enterica
    • Blanc-Potard, A.B. et al. (1999) The SPI-3 pathogenicity island of Salmonella enterica. J. Bacteriol. 181, 998-1004
    • (1999) J. Bacteriol. , vol.181 , pp. 998-1004
    • Blanc-Potard, A.B.1
  • 27
    • 0031867250 scopus 로고    scopus 로고
    • Identification and sequence analysis of a 27-kilobase chromosomal fragment containing a Salmonella pathogenicity island located at 92 minutes on the chromosome map of Salmonella enterica serovar Typhimurium LT2
    • Wong, K.K. et al. (1998) Identification and sequence analysis of a 27-kilobase chromosomal fragment containing a Salmonella pathogenicity island located at 92 minutes on the chromosome map of Salmonella enterica serovar Typhimurium LT2. Infect. Immun. 66, 3365-3371
    • (1998) Infect. Immun. , vol.66 , pp. 3365-3371
    • Wong, K.K.1
  • 28
    • 0031928971 scopus 로고    scopus 로고
    • Identification of a pathogenicity island required for Salmonella enteropathogenicity
    • Wood, M.W. et al. (1998) Identification of a pathogenicity island required for Salmonella enteropathogenicity. Mol. Microbiol. 29, 883-891
    • (1998) Mol. Microbiol. , vol.29 , pp. 883-891
    • Wood, M.W.1
  • 29
    • 0028783297 scopus 로고
    • Role of O-antigen variation in the immune response
    • Reeves, P.R. (1995) Role of O-antigen variation in the immune response. Trends Microbiol. 3, 381-386
    • (1995) Trends Microbiol. , vol.3 , pp. 381-386
    • Reeves, P.R.1
  • 30
    • 0027974102 scopus 로고
    • Molecular evolution in the gnd locus of Salmonella enterica
    • Thampapillai, G. et al. (1994) Molecular evolution in the gnd locus of Salmonella enterica. Mol. Biol. Evol. 11, 813-828
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 813-828
    • Thampapillai, G.1
  • 31
    • 0032584169 scopus 로고    scopus 로고
    • 'Black holes' and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli
    • Maurelli, A.T. et al. (1998) 'Black holes' and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 95, 3943-3948
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 3943-3948
    • Maurelli, A.T.1
  • 32
    • 0007798393 scopus 로고    scopus 로고
    • The roles of IS630 sequence in the expression of the form I antigen of Shigella sonnei: Molecular and evolutionary aspects
    • (van der Zeijst, B.A.M. et al., eds), Elsevier Science
    • Houng, H.H. et al. (1997) The roles of IS630 sequence in the expression of the form I antigen of Shigella sonnei: molecular and evolutionary aspects. In Ecology of Pathogenic Bacteria: Molecular and Evolutionary Aspects (van der Zeijst, B.A.M. et al., eds), pp. 282-283, Elsevier Science
    • (1997) Ecology of Pathogenic Bacteria: Molecular and Evolutionary Aspects , pp. 282-283
    • Houng, H.H.1
  • 33
    • 0032463022 scopus 로고    scopus 로고
    • Escherichia coli clone Sonnei (Shigella sonnei) had a chromosomal O-antigen gene cluster prior to gaining its current plasmid-borne O-antigen genes
    • Lai, V. et al. (1998) Escherichia coli clone Sonnei (Shigella sonnei) had a chromosomal O-antigen gene cluster prior to gaining its current plasmid-borne O-antigen genes. J. Bacteriol. 180, 2983-2986
    • (1998) J. Bacteriol. , vol.180 , pp. 2983-2986
    • Lai, V.1
  • 34
    • 0028810109 scopus 로고
    • Genetic organisation and evolution of Yersinia pseudotuberculosis 3,6-dideoxyhexose biosynthetic genes
    • Hobbs, M. and Reeves, P.R. (1995) Genetic organisation and evolution of Yersinia pseudotuberculosis 3,6-dideoxyhexose biosynthetic genes. Biochim. Biophys. Acta 1245, 273-277
    • (1995) Biochim. Biophys. Acta , vol.1245 , pp. 273-277
    • Hobbs, M.1    Reeves, P.R.2
  • 35
    • 0031883081 scopus 로고    scopus 로고
    • Relationships among the O-antigen gene clusters of Salmonella enterica groups B, D1, D2 and D3
    • Curd, H. et al. (1998) Relationships among the O-antigen gene clusters of Salmonella enterica groups B, D1, D2 and D3. J. Bacteriol. 180, 1002-1007
    • (1998) J. Bacteriol. , vol.180 , pp. 1002-1007
    • Curd, H.1
  • 36
    • 0032764518 scopus 로고    scopus 로고
    • Global transposon mutagenesis and a minimal Mycoplasma genome
    • Hutchison, C.A. et al. (1999) Global transposon mutagenesis and a minimal Mycoplasma genome. Science 286, 2165-2169
    • (1999) Science , vol.286 , pp. 2165-2169
    • Hutchison, C.A.1
  • 37
    • 0032726371 scopus 로고    scopus 로고
    • Identification of regions of the chromosome of Neisseria meningitidis and Neisseria gonorrhoeae which are specific to the pathogenic Neisseria species
    • Perrin, A. et al. (1999) Identification of regions of the chromosome of Neisseria meningitidis and Neisseria gonorrhoeae which are specific to the pathogenic Neisseria species. Infect. Immun. 67, 6119-6129
    • (1999) Infect. Immun. , vol.67 , pp. 6119-6129
    • Perrin, A.1
  • 38
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
    • Nelson, K.E. et al. (1999) Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399, 323-329
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1
  • 39
    • 0026029477 scopus 로고
    • Reference collection of strains of the Salmonella typhimurium complex from natural populations
    • Beltran, P. et al. (1991) Reference collection of strains of the Salmonella typhimurium complex from natural populations. J. Gen. Microbiol. 137, 601-606
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 601-606
    • Beltran, P.1
  • 40
    • 0015839829 scopus 로고
    • Molecular relationships among the Salmonellae
    • Crosa, J.H. et al. (1973) Molecular relationships among the Salmonellae. J. Bacteriol. 115, 307-315
    • (1973) J. Bacteriol. , vol.115 , pp. 307-315
    • Crosa, J.H.1
  • 41
    • 0033046314 scopus 로고    scopus 로고
    • Sample sequencing of a Salmonella typhimurium LT2 lambda library: Comparison to the Escherichia coli K12 genome
    • Wong, R.M-Y. et al. (1999) Sample sequencing of a Salmonella typhimurium LT2 lambda library: comparison to the Escherichia coli K12 genome. FEMS Microbiol. Lett. 173, 411-423
    • (1999) FEMS Microbiol. Lett. , vol.173 , pp. 411-423
    • Wong, R.M.-Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.