메뉴 건너뛰기




Volumn 9, Issue , 2009, Pages

Comparative genomics of lactic acid bacteria reveals a niche-specific gene set

Author keywords

[No Author keywords available]

Indexed keywords

BILE SALT; PROBIOTIC AGENT; RESTRICTION ENDONUCLEASE; SUGAR; BACTERIAL DNA;

EID: 63049115214     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-50     Document Type: Article
Times cited : (111)

References (49)
  • 3
    • 33947106036 scopus 로고    scopus 로고
    • Influence of the Dairy Environment on Gene Expression and Substrate Utilization in Lactic Acid Bacteria
    • 17311971
    • Influence of the Dairy Environment on Gene Expression and Substrate Utilization in Lactic Acid Bacteria. TR Klaenhammer MA Azcarate-Peril E Altermann R Barrangou, J Nutr 2007 137 748S 750 17311971
    • (2007) J Nutr , vol.137
    • Klaenhammer, T.R.1    Azcarate-Peril, M.A.2    Altermann, E.3    Barrangou, R.4
  • 6
    • 33846075967 scopus 로고    scopus 로고
    • Evolutionary Genomics of Lactic Acid Bacteria
    • 17085562. 10.1128/JB.01351-06
    • Evolutionary Genomics of Lactic Acid Bacteria. KS Makarova EV Koonin, J Bacteriol 2007 189 1199 1208 17085562 10.1128/JB.01351-06
    • (2007) J Bacteriol , vol.189 , pp. 1199-1208
    • Makarova, K.S.1    Koonin, E.V.2
  • 7
    • 36248986753 scopus 로고    scopus 로고
    • The genomics of lactic acid bacteria
    • 10.1016/j.tim.2007.09.010. 18024129
    • The genomics of lactic acid bacteria. EA Pfeiler TR Klaenhammer, Trends in Microbiology 2007 15 546 553 10.1016/j.tim.2007.09.010 18024129
    • (2007) Trends in Microbiology , vol.15 , pp. 546-553
    • Pfeiler, E.A.1    Klaenhammer, T.R.2
  • 10
    • 34250622074 scopus 로고    scopus 로고
    • From the Cover: Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118
    • 10.1073/pnas.0700440104. 17456596
    • From the Cover: Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118. SC Corr Y Li CU Riedel PW O'Toole C Hill CGM Gahan, Proc Natl Acad Sci U S A 2007 104 18 7617 21 10.1073/pnas.0700440104 17456596
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.18 , pp. 7617-21
    • Corr, S.C.1    Li, Y.2    Riedel, C.U.3    O'Toole, P.W.4    Hill, C.5    Gahan, C.G.M.6
  • 11
    • 33846931503 scopus 로고    scopus 로고
    • Similarity and Differences in the Lactobacillus acidophilus Group Identified by Polyphasic Analysis and Comparative Genomics
    • 17142402. 10.1128/JB.01393-06
    • Similarity and Differences in the Lactobacillus acidophilus Group Identified by Polyphasic Analysis and Comparative Genomics. B Berger RD Pridmore C Barretto F Delmas-Julien K Schreiber F Arigoni H Brussow, J Bacteriol 2007 189 1311 1321 17142402 10.1128/JB.01393-06
    • (2007) J Bacteriol , vol.189 , pp. 1311-1321
    • Berger, B.1    Pridmore, R.D.2    Barretto, C.3    Delmas-Julien, F.4    Schreiber, K.5    Arigoni, F.6    Brussow, H.7
  • 12
    • 9144222162 scopus 로고    scopus 로고
    • The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content
    • 10.1099/mic.0.27392-0. 15528649
    • The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. J Boekhorst RJ Siezen M-C Zwahlen D Vilanova RD Pridmore A Mercenier M Kleerebezem WM de Vos H Brussow F Desiere, Microbiology 2004 150 3601 3611 10.1099/mic.0.27392-0 15528649
    • (2004) Microbiology , vol.150 , pp. 3601-3611
    • Boekhorst, J.1    Siezen, R.J.2    Zwahlen, M.-C.3    Vilanova, D.4    Pridmore, R.D.5    Mercenier, A.6    Kleerebezem, M.7    De Vos, W.M.8    Brussow, H.9    Desiere, F.10
  • 14
    • 33750950813 scopus 로고    scopus 로고
    • Diversity of the genus Lactobacillus revealed by comparative genomics of five species
    • 10.1099/mic.0.29140-0. 17074890
    • Diversity of the genus Lactobacillus revealed by comparative genomics of five species. C Canchaya MJ Claesson GF Fitzgerald D van Sinderen PW O'Toole, Microbiology 2006 152 3185 3196 10.1099/mic.0.29140-0 17074890
    • (2006) Microbiology , vol.152 , pp. 3185-3196
    • Canchaya, C.1    Claesson, M.J.2    Fitzgerald, G.F.3    Van Sinderen, D.4    O'Toole, P.W.5
  • 15
    • 33847673288 scopus 로고    scopus 로고
    • The genus Lactobacillus - A genomic basis for understanding its diversity
    • 10.1111/j.1574-6968.2006.00596.x. 17343688
    • The genus Lactobacillus - a genomic basis for understanding its diversity. MJ Claesson D van Sinderen PW O'Toole, FEMS Microbiology Letters 2007 269 22 28 10.1111/j.1574-6968.2006.00596.x 17343688
    • (2007) FEMS Microbiology Letters , vol.269 , pp. 22-28
    • Claesson, M.J.1    Van Sinderen, D.2    O'Toole, P.W.3
  • 17
    • 27144493223 scopus 로고    scopus 로고
    • GENOME TREES and the NATURE of GENOME EVOLUTION
    • 10.1146/annurev.micro.59.030804.121233. 16153168
    • GENOME TREES AND THE NATURE OF GENOME EVOLUTION. B Snel MA Huynen BE Dutilh, Annual Review of Microbiology 2005 59 191 209 10.1146/annurev.micro.59. 030804.121233 16153168
    • (2005) Annual Review of Microbiology , vol.59 , pp. 191-209
    • Snel, B.1    Huynen, M.A.2    Dutilh, B.E.3
  • 19
    • 1842714417 scopus 로고    scopus 로고
    • Post-genomics of lactic acid bacteria and other food-grade bacteria to discover gut functionality
    • 10.1016/j.copbio.2004.02.006. 15081044
    • Post-genomics of lactic acid bacteria and other food-grade bacteria to discover gut functionality. WM de Vos PA Bron M Kleerebezem, Current Opinion in Biotechnology 2004 15 86 93 10.1016/j.copbio.2004.02.006 15081044
    • (2004) Current Opinion in Biotechnology , vol.15 , pp. 86-93
    • De Vos, W.M.1    Bron, P.A.2    Kleerebezem, M.3
  • 21
    • 0036010638 scopus 로고    scopus 로고
    • Beta-Glucose 1-phosphate-interconverting enzymes in maltose- and trehalose-fermenting lactic acid bacteria
    • 10.1046/j.1462-2920.2002.00268.x. 11972617
    • Beta-Glucose 1-phosphate-interconverting enzymes in maltose- and trehalose-fermenting lactic acid bacteria. U Andersson P Radstrom, Environmental Microbiology 2002 4 81 88 10.1046/j.1462-2920.2002.00268.x 11972617
    • (2002) Environmental Microbiology , vol.4 , pp. 81-88
    • Andersson, U.1    Radstrom, P.2
  • 22
    • 0034894511 scopus 로고    scopus 로고
    • Metabolic and functional properties of lactic acid bacteria in the gastro-intestinal ecosystem: A comparative in vitro study between bacteria of intestinal and fermented food origin
    • 10.1078/0723-2020-00023. 11518324
    • Metabolic and functional properties of lactic acid bacteria in the gastro-intestinal ecosystem: a comparative in vitro study between bacteria of intestinal and fermented food origin. D Haller H Colbus M Gänzle P Scherenbacher C Bode W Hammes, Syst Appl Microbiol 2001 24 2 218 26 10.1078/0723-2020-00023 11518324
    • (2001) Syst Appl Microbiol , vol.24 , Issue.2 , pp. 218-26
    • Haller, D.1    Colbus, H.2    Gänzle, M.3    Scherenbacher, P.4    Bode, C.5    Hammes, W.6
  • 23
    • 0024374964 scopus 로고
    • Lactobacilli and bile salt hydrolase in the murine intestinal tract
    • 2527484
    • Lactobacilli and bile salt hydrolase in the murine intestinal tract. GW Tannock MP Dashkevicz SD Feighner, Appl Environ Microbiol 1989 55 1848 1851 2527484
    • (1989) Appl Environ Microbiol , vol.55 , pp. 1848-1851
    • Tannock, G.W.1    Dashkevicz, M.P.2    Feighner, S.D.3
  • 24
    • 0035430951 scopus 로고    scopus 로고
    • Bile Salt Hydrolase Activity and Resistance to Toxicity of Conjugated Bile Salts Are Unrelated Properties in Lactobacilli
    • 11472922. 10.1128/AEM.67.8.3476-3480.2001
    • Bile Salt Hydrolase Activity and Resistance to Toxicity of Conjugated Bile Salts Are Unrelated Properties in Lactobacilli. SA Moser DC Savage, Appl Environ Microbiol 2001 67 3476 3480 11472922 10.1128/AEM.67.8.3476-3480.2001
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3476-3480
    • Moser, S.A.1    Savage, D.C.2
  • 26
    • 51649086648 scopus 로고    scopus 로고
    • Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome
    • 10.1073/pnas.0804437105. 18757757
    • Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome. BV Jones Mi Begley C Hill CGM Gahan JR Marchesi, Proc Natl Acad Sci U S A 2008 105 36 13580 5 10.1073/pnas.0804437105 18757757
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.36 , pp. 13580-5
    • Jones, B.V.1    Begley, M.2    Hill, C.3    Gahan, C.G.M.4    Marchesi, J.R.5
  • 27
    • 42549156731 scopus 로고    scopus 로고
    • Identification of Genes Associated with the Long-Gut-Persistence Phenotype of the Probiotic Lactobacillus johnsonii Strain NCC533 Using a Combination of Genomics and Transcriptome Analysis
    • 18223069. 10.1128/JB.01637-07
    • Identification of Genes Associated with the Long-Gut-Persistence Phenotype of the Probiotic Lactobacillus johnsonii Strain NCC533 Using a Combination of Genomics and Transcriptome Analysis. E Denou RD Pridmore B Berger J-M Panoff F Arigoni H Brussow, J Bacteriol 2008 190 3161 3168 18223069 10.1128/JB.01637-07
    • (2008) J Bacteriol , vol.190 , pp. 3161-3168
    • Denou, E.1    Pridmore, R.D.2    Berger, B.3    Panoff, J.-M.4    Arigoni, F.5    Brussow, H.6
  • 28
    • 34347374317 scopus 로고    scopus 로고
    • Characterization of a Novel Bile-Inducible Operon Encoding a Two-Component Regulatory System in Lactobacillus acidophilus
    • 17449631. 10.1128/JB.00337-07
    • Characterization of a Novel Bile-Inducible Operon Encoding a Two-Component Regulatory System in Lactobacillus acidophilus. EA Pfeiler MA Azcarate-Peril TR Klaenhammer, J Bacteriol 2007 189 4624 4634 17449631 10.1128/JB.00337-07
    • (2007) J Bacteriol , vol.189 , pp. 4624-4634
    • Pfeiler, E.A.1    Azcarate-Peril, M.A.2    Klaenhammer, T.R.3
  • 29
    • 0025051064 scopus 로고
    • Genetics of the proteolytic system of lactic acid bacteria
    • 2271222
    • Genetics of the proteolytic system of lactic acid bacteria. J Kok, FEMS Microbiol Rev 1990 7 1-2 15 42 2271222
    • (1990) FEMS Microbiol Rev , vol.7 , Issue.1-2 , pp. 15-42
    • Kok, J.1
  • 30
    • 33745945472 scopus 로고    scopus 로고
    • Proteolytic systems of lactic acid bacteria
    • 10.1007/s00253-006-0427-1. 16628446
    • Proteolytic systems of lactic acid bacteria. K Savijoki H Ingmer P Varmanen, Appl Microbiol Biotechnol 2006 71 4 394 406 10.1007/s00253-006-0427-1 16628446
    • (2006) Appl Microbiol Biotechnol , vol.71 , Issue.4 , pp. 394-406
    • Savijoki, K.1    Ingmer, H.2    Varmanen, P.3
  • 31
    • 20444430768 scopus 로고    scopus 로고
    • Identification of Endopeptidase Genes from the Genomic Sequence of Lactobacillus helveticus CNRZ32 and the Role of These Genes in Hydrolysis of Model Bitter Peptides
    • 15932998. 10.1128/AEM.71.6.3025-3032.2005
    • Identification of Endopeptidase Genes from the Genomic Sequence of Lactobacillus helveticus CNRZ32 and the Role of These Genes in Hydrolysis of Model Bitter Peptides. VR Sridhar JE Hughes DL Welker JR Broadbent JL Steele, Appl Environ Microbiol 2005 71 3025 3032 15932998 10.1128/AEM.71.6.3025-3032. 2005
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3025-3032
    • Sridhar, V.R.1    Hughes, J.E.2    Welker, D.L.3    Broadbent, J.R.4    Steele, J.L.5
  • 32
    • 1642269096 scopus 로고    scopus 로고
    • Controlled Autolysis and Enzyme Release in a Recombinant Lactococcal Strain Expressing the Metalloendopeptidase Enterolysin A
    • 15006800. 10.1128/AEM.70.3.1744-1748.2004
    • Controlled Autolysis and Enzyme Release in a Recombinant Lactococcal Strain Expressing the Metalloendopeptidase Enterolysin A. RM Hickey RP Ross C Hill, Appl Environ Microbiol 2004 70 1744 1748 15006800 10.1128/AEM.70.3.1744- 1748.2004
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1744-1748
    • Hickey, R.M.1    Ross, R.P.2    Hill, C.3
  • 33
    • 0036780428 scopus 로고    scopus 로고
    • Overexpression of Peptidases in Lactococcus and Evaluation of Their Release from Leaky Cells
    • 12416795
    • Overexpression of Peptidases in Lactococcus and Evaluation of Their Release from Leaky Cells. TR Tuler MJ Callanan TR Klaenhammer, J Dairy Sci 2002 85 2438 2450 12416795
    • (2002) J Dairy Sci , vol.85 , pp. 2438-2450
    • Tuler, T.R.1    Callanan, M.J.2    Klaenhammer, T.R.3
  • 34
    • 0035985105 scopus 로고    scopus 로고
    • Latent bioactive peptides in milk proteins: Proteolytic activation and significance in dairy processing
    • 10.1080/10408690290825538. 12058981
    • Latent bioactive peptides in milk proteins: proteolytic activation and significance in dairy processing. M Gobbetti L Stepaniak M De Angelis A Corsetti R Di Cagno, Crit Rev Food Sci Nutr 2002 42 3 223 39 10.1080/10408690290825538 12058981
    • (2002) Crit Rev Food Sci Nutr , vol.42 , Issue.3 , pp. 223-39
    • Gobbetti, M.1    Stepaniak, L.2    De Angelis, M.3    Corsetti, A.4    Di Cagno, R.5
  • 35
    • 0033565680 scopus 로고    scopus 로고
    • PepS from Streptococcus thermophilus. A new member of the aminopeptidase T family of thermophilic bacteria
    • 10.1046/j.1432-1327.1999.00528.x. 10406960
    • PepS from Streptococcus thermophilus. A new member of the aminopeptidase T family of thermophilic bacteria. MD Fernandez-Espla F Rul, European Journal of Biochemistry 1999 263 502 510 10.1046/j.1432-1327.1999.00528.x 10406960
    • (1999) European Journal of Biochemistry , vol.263 , pp. 502-510
    • Fernandez-Espla, M.D.1    Rul, F.2
  • 38
    • 33750963625 scopus 로고    scopus 로고
    • The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment
    • 10.1099/mic.0.29217-0. 17074889
    • The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment. J Boekhorst M Wels M Kleerebezem RJ Siezen, Microbiology 2006 152 3175 3183 10.1099/mic.0.29217-0 17074889
    • (2006) Microbiology , vol.152 , pp. 3175-3183
    • Boekhorst, J.1    Wels, M.2    Kleerebezem, M.3    Siezen, R.J.4
  • 41
    • 56049119880 scopus 로고    scopus 로고
    • Comparative Genome Analysis of Lactobacillus reuteri and Lactobacillus fermentum Reveal a Genomic Island for Reuterin and Cobalamin Production
    • 10.1093/dnares/dsn009. 18487258
    • Comparative Genome Analysis of Lactobacillus reuteri and Lactobacillus fermentum Reveal a Genomic Island for Reuterin and Cobalamin Production. H Morita H Toh S Fukuda H Horikawa K Oshima T Suzuki M Murakami S Hisamatsu Y Kato T Takizawa, DNA Res 2008 15 151 161 10.1093/dnares/dsn009 18487258
    • (2008) DNA Res , vol.15 , pp. 151-161
    • Morita, H.1    Toh, H.2    Fukuda, S.3    Horikawa, H.4    Oshima, K.5    Suzuki, T.6    Murakami, M.7    Hisamatsu, S.8    Kato, Y.9    Takizawa, T.10
  • 43
    • 0038636966 scopus 로고    scopus 로고
    • GAMOLA: A new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes
    • 10.1089/153623103322246557. 14506845
    • GAMOLA: a new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes. E Altermann TR Klaenhammer, Omics 2003 7 161 9 10.1089/153623103322246557 14506845
    • (2003) Omics , vol.7 , pp. 161-9
    • Altermann, E.1    Klaenhammer, T.R.2
  • 44
    • 0023989064 scopus 로고
    • Improved Tools for Biological Sequence Comparison
    • 3162770. 10.1073/pnas.85.8.2444
    • Improved Tools for Biological Sequence Comparison. W Pearson D Lipman, Proc Natl Acad Sci USA 1988 85 2444 2448 3162770 10.1073/pnas.85.8.2444
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.1    Lipman, D.2
  • 47
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417. 10.1093/nar/22.22.4673
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucl Acids Res 1994 22 4673 4680 7984417 10.1093/nar/22.22.4673
    • (1994) Nucl Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 48
    • 0000122573 scopus 로고
    • Phylip; Phylogeny Inference Package Version 3.2
    • Phylip; Phylogeny Inference Package Version 3.2. J Felsentein, Cladistics 1989 5 164 166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsentein, J.1
  • 49
    • 13844250623 scopus 로고    scopus 로고
    • Clann: Investigating phylogenetic information through supertree analyses
    • 10.1093/bioinformatics/bti020. 15374874
    • Clann: investigating phylogenetic information through supertree analyses. CJ Creevey JO McInerney, Bioinformatics 2005 21 390 392 10.1093/bioinformatics/ bti020 15374874
    • (2005) Bioinformatics , vol.21 , pp. 390-392
    • Creevey, C.J.1    McInerney, J.O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.