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Volumn 8, Issue 1, 2016, Pages

The healthy human microbiome

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; BOVINE MILK OLIGOSACCHARIDE; DNA; GLYCOSAMINOGLYCAN; HUMAN MILK OLIGOSACCHARIDE; OLIGOSACCHARIDE; RNA 16S; SHORT CHAIN FATTY ACID; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 84964478793     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/s13073-016-0307-y     Document Type: Review
Times cited : (1240)

References (133)
  • 1
    • 84902660778 scopus 로고    scopus 로고
    • Defining dysbiosis and its influence on host immunity and disease
    • Petersen C, Round JL. Defining dysbiosis and its influence on host immunity and disease. Cell Microbiol. 2014;16:1024-33.
    • (2014) Cell Microbiol , vol.16 , pp. 1024-1033
    • Petersen, C.1    Round, J.L.2
  • 2
    • 84869188027 scopus 로고    scopus 로고
    • Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications
    • Backhed F, Fraser CM, Ringel Y, Sanders ME, Sartor RB, Sherman PM, et al. Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications. Cell Host Microbe. 2012;12:611-22.
    • (2012) Cell Host Microbe , vol.12 , pp. 611-622
    • Backhed, F.1    Fraser, C.M.2    Ringel, Y.3    Sanders, M.E.4    Sartor, R.B.5    Sherman, P.M.6
  • 3
    • 84893704050 scopus 로고    scopus 로고
    • Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis
    • Trompette A, Gollwitzer ES, Yadava K, Sichelstiel AK, Sprenger N, Ngom-Bru C, et al. Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis. Nat Med. 2014;20:159-66.
    • (2014) Nat Med , vol.20 , pp. 159-166
    • Trompette, A.1    Gollwitzer, E.S.2    Yadava, K.3    Sichelstiel, A.K.4    Sprenger, N.5    Ngom-Bru, C.6
  • 4
    • 84894118144 scopus 로고    scopus 로고
    • Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders
    • Hsiao EY, McBride SW, Hsien S, Sharon G, Hyde ER, McCue T, et al. Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders. Cell. 2013;155:1451-63.
    • (2013) Cell , vol.155 , pp. 1451-1463
    • Hsiao, E.Y.1    McBride, S.W.2    Hsien, S.3    Sharon, G.4    Hyde, E.R.5    McCue, T.6
  • 5
    • 85044695622 scopus 로고    scopus 로고
    • Cancer and the microbiota
    • Garrett WS. Cancer and the microbiota. Science. 2015;348:80-6.
    • (2015) Science , vol.348 , pp. 80-86
    • Garrett, W.S.1
  • 6
    • 84899957349 scopus 로고    scopus 로고
    • Functional and phylogenetic assembly of microbial communities in the human microbiome
    • Shafquat A, Joice R, Simmons SL, Huttenhower C. Functional and phylogenetic assembly of microbial communities in the human microbiome. Trends Microbiol. 2014;22:261-6.
    • (2014) Trends Microbiol , vol.22 , pp. 261-266
    • Shafquat, A.1    Joice, R.2    Simmons, S.L.3    Huttenhower, C.4
  • 7
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • The Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207-14.
    • (2012) Nature , vol.486 , pp. 207-214
  • 9
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010;464:59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5    Manichanh, C.6
  • 10
    • 84874612821 scopus 로고    scopus 로고
    • The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters
    • Aagaard K, Petrosino J, Keitel W, Watson M, Katancik J, Garcia N, et al. The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters. FASEB J. 2013;27:1012-22.
    • (2013) FASEB J , vol.27 , pp. 1012-1022
    • Aagaard, K.1    Petrosino, J.2    Keitel, W.3    Watson, M.4    Katancik, J.5    Garcia, N.6
  • 13
    • 80053273721 scopus 로고    scopus 로고
    • Toward understanding, managing, and protecting microbial ecosystems
    • Bodelier PL. Toward understanding, managing, and protecting microbial ecosystems. Front Microbiol. 2011;2:80.
    • (2011) Front Microbiol , vol.2 , pp. 80
    • Bodelier, P.L.1
  • 15
    • 84927692256 scopus 로고    scopus 로고
    • The first 1000 cultured species of the human gastrointestinal microbiota
    • Rajilic-Stojanovic M, de Vos WM. The first 1000 cultured species of the human gastrointestinal microbiota. FEMS Microbiol Rev. 2014;38:996-1047.
    • (2014) FEMS Microbiol Rev , vol.38 , pp. 996-1047
    • Rajilic-Stojanovic, M.1    Vos, W.M.2
  • 16
    • 0016167941 scopus 로고
    • Human fecal flora: the normal flora of 20 Japanese-Hawaiians
    • Moore WE, Holdeman LV. Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl Microbiol. 1974;27:961-79.
    • (1974) Appl Microbiol , vol.27 , pp. 961-979
    • Moore, W.E.1    Holdeman, L.V.2
  • 17
    • 0017404727 scopus 로고
    • Role of gut bacterial flora in nutrition and health: a review of recent advances in bacteriological techniques, metabolism, and factors affecting flora composition
    • Brown JP. Role of gut bacterial flora in nutrition and health: a review of recent advances in bacteriological techniques, metabolism, and factors affecting flora composition. CRC Crit Rev Food Sci Nutr. 1977;8:229-336.
    • (1977) CRC Crit Rev Food Sci Nutr , vol.8 , pp. 229-336
    • Brown, J.P.1
  • 19
    • 0031692488 scopus 로고    scopus 로고
    • Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
    • Franks AH, Harmsen HJ, Raangs GC, Jansen GJ, Schut F, Welling GW. Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol. 1998;64:3336-45.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3336-3345
    • Franks, A.H.1    Harmsen, H.J.2    Raangs, G.C.3    Jansen, G.J.4    Schut, F.5    Welling, G.W.6
  • 20
    • 0036181778 scopus 로고    scopus 로고
    • Exploring prokaryotic diversity in the genomic era
    • Reviews0003
    • Hugenholtz P. Exploring prokaryotic diversity in the genomic era. Genome Biol. 2002;3:Reviews0003.
    • (2002) Genome Biol , vol.3
    • Hugenholtz, P.1
  • 21
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau A, Bonnet R, Sutren M, Godon JJ, Gibson GR, Collins MD, Dore J. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol. 1999;65:4799-807.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.J.4    Gibson, G.R.5    Collins, M.D.6    Dore, J.7
  • 22
    • 0036185771 scopus 로고    scopus 로고
    • Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis
    • Hold GL, Pryde SE, Russell VJ, Furrie E, Flint HJ. Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis. FEMS Microbiol Ecol. 2002;39:33-9.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 33-39
    • Hold, G.L.1    Pryde, S.E.2    Russell, V.J.3    Furrie, E.4    Flint, H.J.5
  • 25
    • 84910125156 scopus 로고    scopus 로고
    • Determining microbial products and identifying molecular targets in the human microbiome
    • Joice R, Yasuda K, Shafquat A, Morgan XC, Huttenhower C. Determining microbial products and identifying molecular targets in the human microbiome. Cell Metab. 2014;20:731-41.
    • (2014) Cell Metab , vol.20 , pp. 731-741
    • Joice, R.1    Yasuda, K.2    Shafquat, A.3    Morgan, X.C.4    Huttenhower, C.5
  • 27
    • 69949111703 scopus 로고    scopus 로고
    • The core gut microbiome, energy balance and obesity
    • Turnbaugh PJ, Gordon JI. The core gut microbiome, energy balance and obesity. J Physiol. 2009;587:4153-8.
    • (2009) J Physiol , vol.587 , pp. 4153-4158
    • Turnbaugh, P.J.1    Gordon, J.I.2
  • 28
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature. 2012;490:55-60.
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1    Li, Y.2    Cai, Z.3    Li, S.4    Zhu, J.5    Zhang, F.6
  • 29
    • 84905730165 scopus 로고    scopus 로고
    • An integrated catalog of reference genes in the human gut microbiome
    • Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, et al. An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol. 2014;32:834-41.
    • (2014) Nat Biotechnol , vol.32 , pp. 834-841
    • Li, J.1    Jia, H.2    Cai, X.3    Zhong, H.4    Feng, Q.5    Sunagawa, S.6
  • 30
  • 31
    • 84870322666 scopus 로고    scopus 로고
    • Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease
    • Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, et al. Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. PLoS One. 2012;7, e49138.
    • (2012) PLoS One , vol.7
    • Erickson, A.R.1    Cantarel, B.L.2    Lamendella, R.3    Darzi, Y.4    Mongodin, E.F.5    Pan, C.6
  • 32
    • 84974635271 scopus 로고    scopus 로고
    • Revised estimates for the number of human and bacteria cells in the body.
    • Sender R, Fuchs S, Milo R. Revised estimates for the number of human and bacteria cells in the body. bioRxiv. 2016. http://dx.doi.org/10.1101/036103.
    • (2016) bioRxiv.
    • Sender, R.1    Fuchs, S.2    Milo, R.3
  • 33
    • 84873708523 scopus 로고    scopus 로고
    • The oral microbiome in health and disease
    • Wade WG. The oral microbiome in health and disease. Pharmacol Res. 2013;69:137-43.
    • (2013) Pharmacol Res , vol.69 , pp. 137-143
    • Wade, W.G.1
  • 37
  • 41
    • 79959247053 scopus 로고    scopus 로고
    • Characterization of the diversity and temporal stability of bacterial communities in human milk
    • Hunt KM, Foster JA, Forney LJ, Schutte UM, Beck DL, Abdo Z, et al. Characterization of the diversity and temporal stability of bacterial communities in human milk. PLoS One. 2011;6, e21313.
    • (2011) PLoS One , vol.6
    • Hunt, K.M.1    Foster, J.A.2    Forney, L.J.3    Schutte, U.M.4    Beck, D.L.5    Abdo, Z.6
  • 42
    • 84907287922 scopus 로고    scopus 로고
    • Comment on "the placenta harbors a unique microbiome"
    • Kliman HJ. Comment on "the placenta harbors a unique microbiome". Sci Transl Med. 2014;6:254le254.
    • (2014) Sci Transl Med , vol.6 , pp. 254le254
    • Kliman, H.J.1
  • 43
    • 84958211659 scopus 로고    scopus 로고
    • Comprehensive description of blood microbiome from healthy donors assessed by 16S targeted metagenomic sequencing
    • Paisse S, Valle C, Servant F, Courtney M, Burcelin R, Amar J, Lelouvier B. Comprehensive description of blood microbiome from healthy donors assessed by 16S targeted metagenomic sequencing. Transfusion. 2016. doi: 10.1111/trf.13477.
    • (2016) Transfusion
    • Paisse, S.1    Valle, C.2    Servant, F.3    Courtney, M.4    Burcelin, R.5    Amar, J.6    Lelouvier, B.7
  • 46
    • 84920644670 scopus 로고    scopus 로고
    • Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
    • Salter SJ, Cox MJ, Turek EM, Calus ST, Cookson WO, Moffatt MF, et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 2014;12:87.
    • (2014) BMC Biol , vol.12 , pp. 87
    • Salter, S.J.1    Cox, M.J.2    Turek, E.M.3    Calus, S.T.4    Cookson, W.O.5    Moffatt, M.F.6
  • 47
    • 84930959073 scopus 로고    scopus 로고
    • Archaeal lineages within the human microbiome: absent, rare or elusive?
    • Horz HP. Archaeal lineages within the human microbiome: absent, rare or elusive? Life (Basel). 2015;5:1333-45.
    • (2015) Life (Basel) , vol.5 , pp. 1333-1345
    • Horz, H.P.1
  • 48
    • 79958292341 scopus 로고    scopus 로고
    • Diversity and quantitative analysis of Archaea in aggressive periodontitis and periodontally healthy subjects
    • Matarazzo F, Ribeiro AC, Feres M, Faveri M, Mayer MP. Diversity and quantitative analysis of Archaea in aggressive periodontitis and periodontally healthy subjects. J Clin Periodontol. 2011;38:621-7.
    • (2011) J Clin Periodontol , vol.38 , pp. 621-627
    • Matarazzo, F.1    Ribeiro, A.C.2    Feres, M.3    Faveri, M.4    Mayer, M.P.5
  • 50
    • 84897127283 scopus 로고    scopus 로고
    • The virome in mammalian physiology and disease
    • Virgin HW. The virome in mammalian physiology and disease. Cell. 2014;157:142-50.
    • (2014) Cell , vol.157 , pp. 142-150
    • Virgin, H.W.1
  • 53
    • 85027930100 scopus 로고    scopus 로고
    • Phage-bacteria interaction network in human oral microbiome
    • Wang J, Gao Y, Zhao F. Phage-bacteria interaction network in human oral microbiome. Environ Microbiol. 2015. doi: 10.1111/1462-2920.
    • (2015) Environ Microbiol
    • Wang, J.1    Gao, Y.2    Zhao, F.3
  • 54
    • 84897128562 scopus 로고    scopus 로고
    • Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities
    • Norman JM, Handley SA, Virgin HW. Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities. Gastroenterology. 2014;146:1459-69.
    • (2014) Gastroenterology , vol.146 , pp. 1459-1469
    • Norman, J.M.1    Handley, S.A.2    Virgin, H.W.3
  • 55
    • 84879786685 scopus 로고    scopus 로고
    • The emerging world of the fungal microbiome
    • Huffnagle GB, Noverr MC. The emerging world of the fungal microbiome. Trends Microbiol. 2013;21:334-41.
    • (2013) Trends Microbiol , vol.21 , pp. 334-341
    • Huffnagle, G.B.1    Noverr, M.C.2
  • 57
    • 84901296354 scopus 로고    scopus 로고
    • The mycobiota: interactions between commensal fungi and the host immune system
    • Underhill DM, Iliev ID. The mycobiota: interactions between commensal fungi and the host immune system. Nat Rev Immunol. 2014;14:405-16.
    • (2014) Nat Rev Immunol , vol.14 , pp. 405-416
    • Underhill, D.M.1    Iliev, I.D.2
  • 58
    • 84904890500 scopus 로고    scopus 로고
    • Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
    • Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, et al. Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity. Front Microbiol. 2014;5:298.
    • (2014) Front Microbiol , vol.5 , pp. 298
    • Parfrey, L.W.1    Walters, W.A.2    Lauber, C.L.3    Clemente, J.C.4    Berg-Lyons, D.5    Teiling, C.6
  • 59
    • 84879414990 scopus 로고    scopus 로고
    • Topographic diversity of fungal and bacterial communities in human skin
    • Findley K, Oh J, Yang J, Conlan S, Deming C, Meyer JA, et al. Topographic diversity of fungal and bacterial communities in human skin. Nature. 2013;498:367-70.
    • (2013) Nature , vol.498 , pp. 367-370
    • Findley, K.1    Oh, J.2    Yang, J.3    Conlan, S.4    Deming, C.5    Meyer, J.A.6
  • 60
    • 84886536182 scopus 로고    scopus 로고
    • Lactobacillus crispatus modulates epithelial cell defense against Candida albicans through Toll-like receptors 2 and 4, interleukin 8 and human beta-defensins 2 and 3
    • Rizzo A, Losacco A, Carratelli CR. Lactobacillus crispatus modulates epithelial cell defense against Candida albicans through Toll-like receptors 2 and 4, interleukin 8 and human beta-defensins 2 and 3. Immunol Lett. 2013;156:102-9.
    • (2013) Immunol Lett , vol.156 , pp. 102-109
    • Rizzo, A.1    Losacco, A.2    Carratelli, C.R.3
  • 61
    • 84875903218 scopus 로고    scopus 로고
    • Antimicrobial and probiotic properties of yeasts: from fundamental to novel applications
    • Hatoum R, Labrie S, Fliss I. Antimicrobial and probiotic properties of yeasts: from fundamental to novel applications. Front Microbiol. 2012;3:421.
    • (2012) Front Microbiol , vol.3 , pp. 421
    • Hatoum, R.1    Labrie, S.2    Fliss, I.3
  • 64
    • 84929659920 scopus 로고    scopus 로고
    • Helminths and the microbiota: parts of the hygiene hypothesis
    • Loke P, Lim YA. Helminths and the microbiota: parts of the hygiene hypothesis. Parasite Immunol. 2015;37:314-23.
    • (2015) Parasite Immunol , vol.37 , pp. 314-323
    • Loke, P.1    Lim, Y.A.2
  • 65
    • 84929115079 scopus 로고    scopus 로고
    • Commensal-pathogen interactions in the intestinal tract: lactobacilli promote infection with, and are promoted by, helminth parasites
    • Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, et al. Commensal-pathogen interactions in the intestinal tract: lactobacilli promote infection with, and are promoted by, helminth parasites. Gut Microbes. 2014;5:522-32.
    • (2014) Gut Microbes , vol.5 , pp. 522-532
    • Reynolds, L.A.1    Smith, K.A.2    Filbey, K.J.3    Harcus, Y.4    Hewitson, J.P.5    Redpath, S.A.6
  • 67
    • 77957075815 scopus 로고    scopus 로고
    • Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
    • De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A. 2010;107:14691-6.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 14691-14696
    • Filippo, C.1    Cavalieri, D.2    Paola, M.3    Ramazzotti, M.4    Poullet, J.B.5    Massart, S.6
  • 68
    • 84938764374 scopus 로고    scopus 로고
    • Distinct composition of the oral indigenous microbiota in South Korean and Japanese adults
    • Takeshita T, Matsuo K, Furuta M, Shibata Y, Fukami K, Shimazaki Y, et al. Distinct composition of the oral indigenous microbiota in South Korean and Japanese adults. Sci Rep. 2014;4:6990.
    • (2014) Sci Rep , vol.4 , pp. 6990
    • Takeshita, T.1    Matsuo, K.2    Furuta, M.3    Shibata, Y.4    Fukami, K.5    Shimazaki, Y.6
  • 70
    • 84939571535 scopus 로고    scopus 로고
    • A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
    • Zhang J, Guo Z, Xue Z, Sun Z, Zhang M, Wang L, et al. A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities. ISME J. 2015;9:1979-90.
    • (2015) ISME J , vol.9 , pp. 1979-1990
    • Zhang, J.1    Guo, Z.2    Xue, Z.3    Sun, Z.4    Zhang, M.5    Wang, L.6
  • 72
  • 75
    • 84880831180 scopus 로고    scopus 로고
    • Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
    • Hu Y, Yang X, Qin J, Lu N, Cheng G, Wu N, et al. Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota. Nat Commun. 2013;4:2151.
    • (2013) Nat Commun , vol.4 , pp. 2151
    • Hu, Y.1    Yang, X.2    Qin, J.3    Lu, N.4    Cheng, G.5    Wu, N.6
  • 77
    • 80053410384 scopus 로고    scopus 로고
    • The human microbiota as a marker for migrations of individuals and populations
    • Dominguez-Bello MG, Blaser MJ. The human microbiota as a marker for migrations of individuals and populations. Annu Rev Anthropol. 2011;40:451-74.
    • (2011) Annu Rev Anthropol , vol.40 , pp. 451-474
    • Dominguez-Bello, M.G.1    Blaser, M.J.2
  • 79
    • 0032956143 scopus 로고    scopus 로고
    • Developmental microbial ecology of the neonatal gastrointestinal tract
    • Mackie RI, Sghir A, Gaskins HR. Developmental microbial ecology of the neonatal gastrointestinal tract. Am J Clin Nutr. 1999;69:1035s-45s.
    • (1999) Am J Clin Nutr , vol.69 , pp. 1035s-1045s
    • Mackie, R.I.1    Sghir, A.2    Gaskins, H.R.3
  • 81
    • 84941183248 scopus 로고    scopus 로고
    • The role of short chain fatty acids in appetite regulation and energy homeostasis
    • Byrne CS, Chambers ES, Morrison DJ, Frost G. The role of short chain fatty acids in appetite regulation and energy homeostasis. Int J Obes (Lond). 2015;39:1331-8.
    • (2015) Int J Obes (Lond) , vol.39 , pp. 1331-1338
    • Byrne, C.S.1    Chambers, E.S.2    Morrison, D.J.3    Frost, G.4
  • 82
    • 84881068658 scopus 로고    scopus 로고
    • The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis
    • Smith PM, Howitt MR, Panikov N, Michaud M, Gallini CA, Bohlooly YM, et al. The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis. Science. 2013;341:569-73.
    • (2013) Science , vol.341 , pp. 569-573
    • Smith, P.M.1    Howitt, M.R.2    Panikov, N.3    Michaud, M.4    Gallini, C.A.5    Bohlooly, Y.M.6
  • 83
    • 78650618692 scopus 로고    scopus 로고
    • G-protein-coupled receptor for short-chain fatty acids suppresses colon cancer
    • Tang Y, Chen Y, Jiang H, Robbins GT, Nie D. G-protein-coupled receptor for short-chain fatty acids suppresses colon cancer. Int J Cancer. 2011;128:847-56.
    • (2011) Int J Cancer , vol.128 , pp. 847-856
    • Tang, Y.1    Chen, Y.2    Jiang, H.3    Robbins, G.T.4    Nie, D.5
  • 84
    • 84893859801 scopus 로고    scopus 로고
    • The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition
    • Chang PV, Hao L, Offermanns S, Medzhitov R. The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition. Proc Natl Acad Sci U S A. 2014;111:2247-52.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 2247-2252
    • Chang, P.V.1    Hao, L.2    Offermanns, S.3    Medzhitov, R.4
  • 85
    • 79956311926 scopus 로고    scopus 로고
    • The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota
    • Round JL, Lee SM, Li J, Tran G, Jabri B, Chatila TA, Mazmanian SK. The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota. Science. 2011;332:974-7.
    • (2011) Science , vol.332 , pp. 974-977
    • Round, J.L.1    Lee, S.M.2    Li, J.3    Tran, G.4    Jabri, B.5    Chatila, T.A.6    Mazmanian, S.K.7
  • 86
    • 79956315886 scopus 로고    scopus 로고
    • Intestinal bacterial colonization induces mutualistic regulatory T cell responses
    • Geuking MB, Cahenzli J, Lawson MA, Ng DC, Slack E, Hapfelmeier S, et al. Intestinal bacterial colonization induces mutualistic regulatory T cell responses. Immunity. 2011;34:794-806.
    • (2011) Immunity , vol.34 , pp. 794-806
    • Geuking, M.B.1    Cahenzli, J.2    Lawson, M.A.3    Ng, D.C.4    Slack, E.5    Hapfelmeier, S.6
  • 87
    • 55949124035 scopus 로고    scopus 로고
    • Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
    • Sokol H, Pigneur B, Watterlot L, Lakhdari O, Bermudez-Humaran LG, Gratadoux JJ, et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci U S A. 2008;105:16731-6.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 16731-16736
    • Sokol, H.1    Pigneur, B.2    Watterlot, L.3    Lakhdari, O.4    Bermudez-Humaran, L.G.5    Gratadoux, J.J.6
  • 89
    • 84881477044 scopus 로고    scopus 로고
    • Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
    • Atarashi K, Tanoue T, Oshima K, Suda W, Nagano Y, Nishikawa H, et al. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota. Nature. 2013;500:232-6.
    • (2013) Nature , vol.500 , pp. 232-236
    • Atarashi, K.1    Tanoue, T.2    Oshima, K.3    Suda, W.4    Nagano, Y.5    Nishikawa, H.6
  • 91
    • 79952742717 scopus 로고    scopus 로고
    • Human milk glycobiome and its impact on the infant gastrointestinal microbiota
    • Zivkovic AM, German JB, Lebrilla CB, Mills DA. Human milk glycobiome and its impact on the infant gastrointestinal microbiota. Proc Natl Acad Sci U S A. 2011;108(1):4653-8.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.1 , pp. 4653-4658
    • Zivkovic, A.M.1    German, J.B.2    Lebrilla, C.B.3    Mills, D.A.4
  • 92
    • 84959476433 scopus 로고    scopus 로고
    • Sialylated milk oligosaccharides promote microbiota-dependent growth in models of infant undernutrition
    • Charbonneau MR, O'Donnell D, Blanton LV, Totten SM, Davis JC, Barratt MJ, et al. Sialylated milk oligosaccharides promote microbiota-dependent growth in models of infant undernutrition. Cell. 2016;164:859-71.
    • (2016) Cell , vol.164 , pp. 859-871
    • Charbonneau, M.R.1    O'Donnell, D.2    Blanton, L.V.3    Totten, S.M.4    Davis, J.C.5    Barratt, M.J.6
  • 93
    • 80053119364 scopus 로고    scopus 로고
    • Bovine milk as a source of functional oligosaccharides for improving human health
    • Zivkovic AM, Barile D. Bovine milk as a source of functional oligosaccharides for improving human health. Adv Nutr. 2011;2:284-9.
    • (2011) Adv Nutr , vol.2 , pp. 284-289
    • Zivkovic, A.M.1    Barile, D.2
  • 94
    • 49849093168 scopus 로고    scopus 로고
    • Infant formula oligosaccharides opening the gates (for speculation): commentary on the article by Barrat et al. on page 34
    • Ninonuevo MR, Bode L. Infant formula oligosaccharides opening the gates (for speculation): commentary on the article by Barrat et al. on page 34. Pediatr Res. 2008;64:8-10.
    • (2008) Pediatr Res , vol.64 , pp. 8-10
    • Ninonuevo, M.R.1    Bode, L.2
  • 95
    • 77956389414 scopus 로고    scopus 로고
    • The risks of not breastfeeding for mothers and infants
    • Stuebe A. The risks of not breastfeeding for mothers and infants. Rev Obstet Gynecol. 2009;2:222-31.
    • (2009) Rev Obstet Gynecol , vol.2 , pp. 222-231
    • Stuebe, A.1
  • 96
    • 84961291157 scopus 로고    scopus 로고
    • Which is more important for classifying microbial communities: who's there or what they can do?
    • Xu Z, Malmer D, Langille MG, Way SF, Knight R. Which is more important for classifying microbial communities: who's there or what they can do? ISME J. 2014;8:2357-9.
    • (2014) ISME J , vol.8 , pp. 2357-2359
    • Xu, Z.1    Malmer, D.2    Langille, M.G.3    Way, S.F.4    Knight, R.5
  • 97
    • 84947460926 scopus 로고    scopus 로고
    • Microbiomes in light of traits: a phylogenetic perspective
    • aac9323
    • Martiny JB, Jones SE, Lennon JT, Martiny AC. Microbiomes in light of traits: a phylogenetic perspective. Science. 2015;350:aac9323.
    • (2015) Science , vol.350
    • Martiny, J.B.1    Jones, S.E.2    Lennon, J.T.3    Martiny, A.C.4
  • 101
    • 84861992014 scopus 로고    scopus 로고
    • The application of ecological theory toward an understanding of the human microbiome
    • Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA. The application of ecological theory toward an understanding of the human microbiome. Science. 2012;336:1255-62.
    • (2012) Science , vol.336 , pp. 1255-1262
    • Costello, E.K.1    Stagaman, K.2    Dethlefsen, L.3    Bohannan, B.J.4    Relman, D.A.5
  • 104
    • 84902657697 scopus 로고    scopus 로고
    • Inflammatory bowel disease as a model for translating the microbiome
    • Huttenhower C, Kostic AD, Xavier RJ. Inflammatory bowel disease as a model for translating the microbiome. Immunity. 2014;40:843-54.
    • (2014) Immunity , vol.40 , pp. 843-854
    • Huttenhower, C.1    Kostic, A.D.2    Xavier, R.J.3
  • 105
    • 84860560056 scopus 로고    scopus 로고
    • Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis
    • Kong HH, Oh J, Deming C, Conlan S, Grice EA, Beatson MA, et al. Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis. Genome Res. 2012;22:850-9.
    • (2012) Genome Res , vol.22 , pp. 850-859
    • Kong, H.H.1    Oh, J.2    Deming, C.3    Conlan, S.4    Grice, E.A.5    Beatson, M.A.6
  • 107
    • 79952756960 scopus 로고    scopus 로고
    • Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
    • Dethlefsen L, Relman DA. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A. 2011;108(1):4554-61.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.1 , pp. 4554-4561
    • Dethlefsen, L.1    Relman, D.A.2
  • 108
    • 27644443333 scopus 로고    scopus 로고
    • Molecular identification of bacteria associated with bacterial vaginosis
    • Fredricks DN, Fiedler TL, Marrazzo JM. Molecular identification of bacteria associated with bacterial vaginosis. New Engl J Med. 2005;353:1899-911.
    • (2005) New Engl J Med , vol.353 , pp. 1899-1911
    • Fredricks, D.N.1    Fiedler, T.L.2    Marrazzo, J.M.3
  • 109
    • 84947555858 scopus 로고    scopus 로고
    • Cervical intraepithelial neoplasia disease progression is associated with increased vaginal microbiome diversity
    • Mitra A, MacIntyre DA, Lee YS, Smith A, Marchesi JR, Lehne B, et al. Cervical intraepithelial neoplasia disease progression is associated with increased vaginal microbiome diversity. Sci Rep. 2015;5:16865.
    • (2015) Sci Rep , vol.5 , pp. 16865
    • Mitra, A.1    MacIntyre, D.A.2    Lee, Y.S.3    Smith, A.4    Marchesi, J.R.5    Lehne, B.6
  • 110
    • 84929688630 scopus 로고    scopus 로고
    • Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract
    • Anahtar MN, Byrne EH, Doherty KE, Bowman BA, Yamamoto HS, Soumillon M, et al. Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract. Immunity. 2015;42:965-76.
    • (2015) Immunity , vol.42 , pp. 965-976
    • Anahtar, M.N.1    Byrne, E.H.2    Doherty, K.E.3    Bowman, B.A.4    Yamamoto, H.S.5    Soumillon, M.6
  • 111
    • 70449703996 scopus 로고    scopus 로고
    • What are the consequences of the disappearing human microbiota?
    • Blaser MJ, Falkow S. What are the consequences of the disappearing human microbiota? Nat Rev Microbiol. 2009;7:887-94.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 887-894
    • Blaser, M.J.1    Falkow, S.2
  • 115
    • 0024417450 scopus 로고
    • Hay fever, hygiene, and household size
    • Strachan DP. Hay fever, hygiene, and household size. BMJ. 1989;299:1259-60.
    • (1989) BMJ , vol.299 , pp. 1259-1260
    • Strachan, D.P.1
  • 116
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol. 2008;6(11), e280.
    • (2008) PLoS Biol , vol.6 , Issue.11
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 117
    • 84867303343 scopus 로고    scopus 로고
    • A dynamical-systems view of stem cell biology
    • Furusawa C, Kaneko K. A dynamical-systems view of stem cell biology. Science. 2012;338:215-7.
    • (2012) Science , vol.338 , pp. 215-217
    • Furusawa, C.1    Kaneko, K.2
  • 118
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • The Human Microbiome Project Consortium. A framework for human microbiome research. Nature. 2012;486:215-21.
    • (2012) Nature , vol.486 , pp. 215-221
  • 120
    • 0021316404 scopus 로고
    • The Framingham Heart Study: review of epidemiological design and data, limitations and prospects
    • Higgins MW. The Framingham Heart Study: review of epidemiological design and data, limitations and prospects. Prog Clin Biol Res. 1984;147:51-64.
    • (1984) Prog Clin Biol Res , vol.147 , pp. 51-64
    • Higgins, M.W.1
  • 122
    • 84907686349 scopus 로고    scopus 로고
    • The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease
    • The Integrative Human Microbiome Project Research Network Consortium. The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease. Cell Host Microbe. 2014;16:276-89.
    • (2014) Cell Host Microbe , vol.16 , pp. 276-289
  • 124
    • 84861539347 scopus 로고    scopus 로고
    • Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation
    • Jenq RR, Ubeda C, Taur Y, Menezes CC, Khanin R, Dudakov JA, et al. Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation. J Exp Med. 2012;209:903-11.
    • (2012) J Exp Med , vol.209 , pp. 903-911
    • Jenq, R.R.1    Ubeda, C.2    Taur, Y.3    Menezes, C.C.4    Khanin, R.5    Dudakov, J.A.6
  • 126
    • 53849104729 scopus 로고    scopus 로고
    • The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
    • Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, et al. The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol. 2008;190:6881-93.
    • (2008) J Bacteriol , vol.190 , pp. 6881-6893
    • Rasko, D.A.1    Rosovitz, M.J.2    Myers, G.S.3    Mongodin, E.F.4    Fricke, W.F.5    Gajer, P.6
  • 127
    • 84921508958 scopus 로고    scopus 로고
    • Using comparative genomics to drive new discoveries in microbiology
    • Haft DH. Using comparative genomics to drive new discoveries in microbiology. Curr Opin Microbiol. 2015;23:189-96.
    • (2015) Curr Opin Microbiol , vol.23 , pp. 189-196
    • Haft, D.H.1
  • 128
    • 84876515907 scopus 로고    scopus 로고
    • STRING v9.1: protein-protein interaction networks, with increased coverage and integration
    • Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013;41(Database issue):D808-15.
    • (2013) Nucleic Acids Res , vol.41 , Issue.Database issue , pp. D808-D815
    • Franceschini, A.1    Szklarczyk, D.2    Frankild, S.3    Kuhn, M.4    Simonovic, M.5    Roth, A.6
  • 132
    • 84875905994 scopus 로고    scopus 로고
    • Diagnostic applications of high-throughput DNA sequencing
    • Boyd SD. Diagnostic applications of high-throughput DNA sequencing. Annu Rev Pathol. 2013;8:381-410.
    • (2013) Annu Rev Pathol , vol.8 , pp. 381-410
    • Boyd, S.D.1


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