-
1
-
-
84946013175
-
LncRNAdb v2.0: Expanding the reference database for functional long noncoding RNAs
-
Quek X. C, et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res. 43, D168-D173 (2015).
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D168-D173
-
-
Quek, X.C.1
-
2
-
-
79961170994
-
A ceRNA hypo thesis the Rosetta Stone of a hidden RNA language?
-
Salmena L, Poliseno L, Tay Y, Kats L, & Pandolfi P. P A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?. Cell. 146, 353-358 (2011).
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
3
-
-
84901820446
-
Competitive endogenous RNAs cannot alter microRNA function in vivo
-
Broderick J. A, & Zamore P. D. Competitive endogenous RNAs cannot alter microRNA function in vivo. Mol. Cell. 54, 711-713 (2014).
-
(2014)
Mol. Cell
, vol.54
, pp. 711-713
-
-
Broderick, J.A.1
Zamore, P.D.2
-
4
-
-
84901838697
-
Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance
-
Denzler R, Agarwal V, Stefano J, Bartel D. P, & Stoffel M. Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance. Mol. Cell. 54, 766-776 (2014).
-
(2014)
Mol. Cell
, vol.54
, pp. 766-776
-
-
Denzler, R.1
Agarwal, V.2
Stefano, J.3
Bartel, D.P.4
Stoffel, M.5
-
5
-
-
84922418997
-
Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition
-
Bosson A. D, Zamudio J. R, & Sharp P. A. Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition. Mol. Cell. 56, 347-359 (2014).
-
(2014)
Mol. Cell
, vol.56
, pp. 347-359
-
-
Bosson, A.D.1
Zamudio, J.R.2
Sharp, P.A.3
-
6
-
-
84924330592
-
Competition between target sites of regulators shapes post-Transcriptional gene regulation
-
Jens M, & Rajewsky N. Competition between target sites of regulators shapes post-Transcriptional gene regulation. Nat. Rev. Genet. 16, 113-126 (2015).
-
(2015)
Nat. Rev. Genet
, vol.16
, pp. 113-126
-
-
Jens, M.1
Rajewsky, N.2
-
7
-
-
84876899530
-
Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments
-
Ala U, et al. Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments. Proc. Natl Acad. Sci. USA. 110, 7154-7159 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 7154-7159
-
-
Ala, U.1
-
8
-
-
84879486402
-
Modelling competing endogenous RNA networks
-
Bosia C, Pagnani A, & Zecchina R. Modelling competing endogenous RNA networks. PLoS ONE. 8, e66609 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e66609
-
-
Bosia, C.1
Pagnani, A.2
Zecchina, R.3
-
9
-
-
84874833554
-
MicroRNAs as a selective channel of communication between competing RNAs: A steady-state theory
-
Figliuzzi M, Marinari E, & De Martino A. MicroRNAs as a selective channel of communication between competing RNAs: a steady-state theory. Biophys. J. 104, 1203-1213 (2013).
-
(2013)
Biophys. J.
, vol.104
, pp. 1203-1213
-
-
Figliuzzi, M.1
Marinari, E.2
De Martino, A.3
-
10
-
-
84924302007
-
Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit
-
Yuan Y, et al. Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit. Proc. Natl Acad. Sci. USA. 112, 3158-3163 (2015).
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 3158-3163
-
-
Yuan, Y.1
-
11
-
-
84893698705
-
Competing endogenous RNAs (ceRNAs): New entrants to the intricacies of gene regulation
-
Kartha R. V, & Subramanian S. Competing endogenous RNAs (ceRNAs): new entrants to the intricacies of gene regulation. Front. Genet. 5, 8 (2014).
-
(2014)
Front. Genet
, vol.5
, pp. 8
-
-
Kartha, R.V.1
Subramanian, S.2
-
12
-
-
84891818924
-
StarBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li J. H, Liu S, Zhou H, Qu L. H, & Yang J. H. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res. 42, D92-D97 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D92-D97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.H.5
-
13
-
-
84876167066
-
Competing endogenous RNA database
-
Sarver A. L, & Subramanian S. Competing endogenous RNA database. Bioinformation. 8, 731-733 (2012).
-
(2012)
Bioinformation
, vol.8
, pp. 731-733
-
-
Sarver, A.L.1
Subramanian, S.2
-
14
-
-
84903136092
-
LnCeDB: Database of human long noncoding RNA acting as competing endogenous RNA
-
Das S, Ghosal S, Sen R, & Chakrabarti J. lnCeDB: database of human long noncoding RNA acting as competing endogenous RNA. PLoS ONE. 9, e98965 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e98965
-
-
Das, S.1
Ghosal, S.2
Sen, R.3
Chakrabarti, J.4
-
15
-
-
84922372948
-
Cupid: Simultaneous reconstruction of microRNA-Target and ceRNA networks
-
Chiu H. S, et al. Cupid: simultaneous reconstruction of microRNA-Target and ceRNA networks. Genome Res. 25, 257-267 (2015).
-
(2015)
Genome Res
, vol.25
, pp. 257-267
-
-
Chiu, H.S.1
-
16
-
-
84964312596
-
Systematic exploration of autonomous modules in noisy microRNA-Target networks for testing the generality of the ceRNA hypothesis
-
Yip D. K, Pang I. K, & Yip K. Y. Systematic exploration of autonomous modules in noisy microRNA-Target networks for testing the generality of the ceRNA hypothesis. BMC Genomics. 15, 1178 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 1178
-
-
Yip, D.K.1
Pang, I.K.2
Yip, K.Y.3
-
17
-
-
84943192833
-
MiRSponge: A manually curated database for experimentally supported miRNA sponges and ceRNAs
-
bav098
-
Wang P, et al. miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. Database (Oxford) 2015, bav098 (2015).
-
(2015)
Database (Oxford
, vol.2015
-
-
Wang, P.1
-
18
-
-
84925515962
-
Competing endogenous RNA interplay in cancer: Mechanism, methodology, and perspectives
-
Cheng D. L, Xiang Y. Y, Ji L. J, & Lu X. J. Competing endogenous RNA interplay in cancer: mechanism, methodology, and perspectives. Tumour Biol. 36, 479-488 (2015).
-
(2015)
Tumour Biol
, vol.36
, pp. 479-488
-
-
Cheng, D.L.1
Xiang, Y.Y.2
Ji, L.J.3
Lu, X.J.4
-
19
-
-
84907344020
-
RNA-based regulation: Dynamics and response to perturbations of competing RNAs
-
Figliuzzi M, De Martino A, & Marinari E. RNA-based regulation: dynamics and response to perturbations of competing RNAs. Biophys. J. 107, 1011-1022 (2014).
-
(2014)
Biophys. J.
, vol.107
, pp. 1011-1022
-
-
Figliuzzi, M.1
De Martino, A.2
Marinari, E.3
-
20
-
-
84930505376
-
Identification of lncRNA-Associated competing triplets reveals global patterns and prognostic markers for cancer
-
Wang P, et al. Identification of lncRNA-Associated competing triplets reveals global patterns and prognostic markers for cancer. Nucleic Acids Res. 43, 3478-3489 (2015).
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 3478-3489
-
-
Wang, P.1
-
21
-
-
84904272774
-
Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer
-
Paci P, Colombo T, & Farina L. Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer. BMC Syst. Biol. 8, 83 (2014).
-
(2014)
BMC Syst. Biol
, vol.8
, pp. 83
-
-
Paci, P.1
Colombo, T.2
Farina, L.3
-
22
-
-
84864448111
-
High-Throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries
-
Mullokandov G, et al. High-Throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. Nat. Methods. 9, 840-846 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 840-846
-
-
Mullokandov, G.1
-
23
-
-
1242318826
-
Sequence-specific inhibition of microRNA- And siRNA-induced RNA silencing
-
Meister G, Landthaler M, Dorsett Y, & Tuschl T. Sequence-specific inhibition of microRNA- And siRNA-induced RNA silencing. RNA. 10, 544-550 (2004).
-
(2004)
RNA
, vol.10
, pp. 544-550
-
-
Meister, G.1
Landthaler, M.2
Dorsett, Y.3
Tuschl, T.4
-
24
-
-
28444469246
-
Silencing of microRNAs in vivo with ?antagomirs
-
Krutzfeldt J, et al. Silencing of microRNAs in vivo with ?antagomirs. Nature. 438, 685-689 (2005).
-
(2005)
Nature
, vol.438
, pp. 685-689
-
-
Krutzfeldt, J.1
-
25
-
-
33646027887
-
LNA-modified oligonucleotides mediate specific inhibition of microRNA function
-
Orom U. A, Kauppinen S, & Lund A. H. LNA-modified oligonucleotides mediate specific inhibition of microRNA function. Gene. 372, 137-141 (2006).
-
(2006)
Gene
, vol.372
, pp. 137-141
-
-
Orom, U.A.1
Kauppinen, S.2
Lund, A.H.3
-
26
-
-
36849060584
-
Endogenous microRNA can be broadly exploited to regulate transgene expression according to tissue, lineage and differentiation state
-
Brown B. D, et al. Endogenous microRNA can be broadly exploited to regulate transgene expression according to tissue, lineage and differentiation state. Nat. Biotechnol. 25, 1457-1467 (2007).
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 1457-1467
-
-
Brown, B.D.1
-
27
-
-
34249279050
-
MicroRNA 133 controls cardiac hypertrophy
-
Care A, et al. MicroRNA 133 controls cardiac hypertrophy. Nat. Med. 13, 613-618 (2007).
-
(2007)
Nat. Med
, vol.13
, pp. 613-618
-
-
Care, A.1
-
28
-
-
34548316982
-
MicroRNA sponges: Competitive inhibitors of small RNAs in mammalian cells
-
Ebert M. S, Neilson J. R, & Sharp P. A. MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells. Nat. Methods. 4, 721-726 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 721-726
-
-
Ebert, M.S.1
Neilson, J.R.2
Sharp, P.A.3
-
29
-
-
84908395519
-
Antisense therapeutics in oncology: Current status
-
Farooqi A. A, Rehman Z. U, & Muntane J. Antisense therapeutics in oncology: current status. Onco. Targets Ther. 7, 2035-2042 (2014).
-
(2014)
Onco. Targets Ther
, vol.7
, pp. 2035-2042
-
-
Farooqi, A.A.1
Rehman, Z.U.2
Muntane, J.3
-
30
-
-
78149303249
-
MicroRNA sponges: Progress and possibilities
-
Ebert M. S, & Sharp P. A. MicroRNA sponges: progress and possibilities. RNA. 16, 2043-2050 (2010).
-
(2010)
RNA
, vol.16
, pp. 2043-2050
-
-
Ebert, M.S.1
Sharp, P.A.2
-
31
-
-
42249093319
-
LNA-mediated microRNA silencing in non-human primates
-
Elmen J, et al. LNA-mediated microRNA silencing in non-human primates. Nature. 452, 896-899 (2008).
-
(2008)
Nature
, vol.452
, pp. 896-899
-
-
Elmen, J.1
-
32
-
-
64549109671
-
Vectors expressing efficient RNA decoys achieve the long-Term suppression of specific microRNA activity in mammalian cells
-
Haraguchi T, Ozaki Y, & Iba H. Vectors expressing efficient RNA decoys achieve the long-Term suppression of specific microRNA activity in mammalian cells. Nucleic Acids Res. 37, e43 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. e43
-
-
Haraguchi, T.1
Ozaki, Y.2
Iba, H.3
-
33
-
-
84860720576
-
Polymer nanoparticle-mediated delivery of microRNA inhibition and alternative splicing
-
Cheng C. J, & Saltzman W. M. Polymer nanoparticle-mediated delivery of microRNA inhibition and alternative splicing. Mol. Pharm. 9, 1481-1488 (2012).
-
(2012)
Mol. Pharm
, vol.9
, pp. 1481-1488
-
-
Cheng, C.J.1
Saltzman, W.M.2
-
34
-
-
77957850291
-
Emerging roles for natural microRNA sponges
-
Ebert M. S, & Sharp P. A. Emerging roles for natural microRNA sponges. Curr. Biol. 20, R858-R861 (2010).
-
(2010)
Curr. Biol
, vol.20
, pp. R858-R861
-
-
Ebert, M.S.1
Sharp, P.A.2
-
35
-
-
33646715590
-
Improved targeting of miRNA with antisense oligonucleotides
-
Davis S, Lollo B, Freier S, & Esau C. Improved targeting of miRNA with antisense oligonucleotides. Nucleic Acids Res. 34, 2294-2304 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2294-2304
-
-
Davis, S.1
Lollo, B.2
Freier, S.3
Esau, C.4
-
36
-
-
84872864743
-
On measuring miRNAs after transient transfection of mimics or antisense inhibitors
-
Thomson D. W, Bracken C. P, Szubert J. M, & Goodall G. J. On measuring miRNAs after transient transfection of mimics or antisense inhibitors. PLoS ONE. 8, e55214 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e55214
-
-
Thomson, D.W.1
Bracken, C.P.2
Szubert, J.M.3
Goodall, G.J.4
-
37
-
-
84922773672
-
Modulation of lipoprotein metabolism by antisense technology: Preclinical drug discovery methodology
-
Crooke R. M, & Graham M. J. Modulation of lipoprotein metabolism by antisense technology: preclinical drug discovery methodology. Methods Mol. Biol. 1027, 309-324 (2013).
-
(2013)
Methods Mol. Biol
, vol.1027
, pp. 309-324
-
-
Crooke, R.M.1
Graham, M.J.2
-
38
-
-
37349113774
-
Inhibition of microRNA with antisense oligonucleotides
-
Esau C. C. Inhibition of microRNA with antisense oligonucleotides. Methods. 44, 55-60 (2008).
-
(2008)
Methods
, vol.44
, pp. 55-60
-
-
Esau, C.C.1
-
39
-
-
84875372911
-
Natural RNA circles function as efficient microRNA sponges
-
Hansen T. B, et al. Natural RNA circles function as efficient microRNA sponges. Nature. 495, 384-388 (2013).
-
(2013)
Nature
, vol.495
, pp. 384-388
-
-
Hansen, T.B.1
-
40
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak S, et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature. 495, 333-338 (2013).
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
-
41
-
-
84881503516
-
Pseudogene OCT4 pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for MIR 145 in hepatocellular carcinoma
-
Wang L, et al. Pseudogene OCT4 pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for miR 145 in hepatocellular carcinoma. Carcinogenesis. 34, 1773-1781 (2013).
-
(2013)
Carcinogenesis
, vol.34
, pp. 1773-1781
-
-
Wang, L.1
-
42
-
-
84868676906
-
Evidence for conserved post-Transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs
-
Marques A. C, et al. Evidence for conserved post-Transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs. Genome Biol. 13, R102 (2012).
-
(2012)
Genome Biol
, vol.13
, pp. R102
-
-
Marques, A.C.1
-
43
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno L, et al A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature. 465, 1033-1038 (2010).
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
-
44
-
-
84876177255
-
A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells
-
Johnsson P, et al A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells. Nat. Struct. Mol. Biol. 20, 440-446 (2013).
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 440-446
-
-
Johnsson, P.1
-
45
-
-
84918545890
-
Pseudogene PTENP1 functions as a competing endogenous RNA to suppress clear-cell renal cell carcinoma progression
-
Yu G, et al. Pseudogene PTENP1 functions as a competing endogenous RNA to suppress clear-cell renal cell carcinoma progression. Mol. Cancer Ther. 13, 3086-3097 (2014).
-
(2014)
Mol. Cancer Ther
, vol.13
, pp. 3086-3097
-
-
Yu, G.1
-
46
-
-
84925499111
-
The 3'UTR of the pseudogene CYP4Z2P promotes tumor angiogenesis in breast cancer by acting as a ceRNA for CYP4Z1
-
Zheng L, Li X, Gu Y, Lv X, & Xi T. The 3'UTR of the pseudogene CYP4Z2P promotes tumor angiogenesis in breast cancer by acting as a ceRNA for CYP4Z1. Breast Cancer Res. Treat. 150, 105-118 (2015).
-
(2015)
Breast Cancer Res. Treat
, vol.150
, pp. 105-118
-
-
Zheng, L.1
Li, X.2
Gu, Y.3
Lv, X.4
Xi, T.5
-
47
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla J. M, et al. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat. Genet. 39, 1033-1037 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
-
48
-
-
77956542998
-
CREB up regulates long non-coding RNA HULC expression through interaction with microRNA 372 in liver cancer
-
Wang J, et al. CREB up regulates long non-coding RNA, HULC expression through interaction with microRNA 372 in liver cancer. Nucleic Acids Res. 38, 5366-5383 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5366-5383
-
-
Wang, J.1
-
49
-
-
84877270735
-
LncRNA loc285194 is a p53 regulated tumor suppressor
-
Liu Q, et al. LncRNA loc285194 is a p53 regulated tumor suppressor. Nucleic Acids Res. 41, 4976-4987 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 4976-4987
-
-
Liu, Q.1
-
50
-
-
84876367541
-
Endogenous miRNA sponge lincRNA-RoR regulates Oct4 Nanog, and Sox2 in human embryonic stem cell self-renewal
-
Wang Y, et al. Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal. Dev. Cell. 25, 69-80 (2013).
-
(2013)
Dev. Cell
, vol.25
, pp. 69-80
-
-
Wang, Y.1
-
51
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
Cesana M, et al A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell. 147, 358-369 (2011).
-
(2011)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
-
52
-
-
84874634893
-
A long non-coding RNA, PTCSC3, as a tumor suppressor and a target of miRNAs in thyroid cancer cells
-
Fan M, et al A long non-coding RNA, PTCSC3, as a tumor suppressor and a target of miRNAs in thyroid cancer cells. Exp. Ther. Med. 5, 1143-1146 (2013).
-
(2013)
Exp. Ther. Med
, vol.5
, pp. 1143-1146
-
-
Fan, M.1
-
53
-
-
84874583945
-
Versican 3' untranslated region (3' UTR) functions as a ceRNA in inducing the development of hepatocellular carcinoma by regulating miRNA activity
-
Fang L, et al. Versican 3' untranslated region (3' UTR) functions as a ceRNA in inducing the development of hepatocellular carcinoma by regulating miRNA activity. FASEB J. 27, 907-919 (2013).
-
(2013)
FASEB J.
, vol.27
, pp. 907-919
-
-
Fang, L.1
-
54
-
-
84946486481
-
CXCR4 3'UTR functions as a ceRNA in promoting metastasis, proliferation and survival of MCF 7 cells by regulating MIR 146a activity
-
Zheng T, et al. CXCR4 3'UTR functions as a ceRNA in promoting metastasis, proliferation and survival of MCF 7 cells by regulating miR 146a activity. Eur. J. Cell Biol. 458-469 (2015).
-
(2015)
Eur. J. Cell Biol
, pp. 458-469
-
-
Zheng, T.1
-
55
-
-
77953798171
-
Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA
-
Cazalla D, Yario T, & Steitz J. A. Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA. Science. 328, 1563-1566 (2010).
-
(2010)
Science
, vol.328
, pp. 1563-1566
-
-
Cazalla, D.1
Yario, T.2
Steitz, J.A.3
-
56
-
-
84879126123
-
Selective degradation of host MicroRNAs by an intergenic HCMV noncoding RNA accelerates virus production
-
Lee S, et al. Selective degradation of host MicroRNAs by an intergenic HCMV noncoding RNA accelerates virus production. Cell Host Microbe. 13, 678-690 (2013).
-
(2013)
Cell Host Microbe
, vol.13
, pp. 678-690
-
-
Lee, S.1
-
57
-
-
84924561760
-
Hepatitis C virus RNA functionally sequesters MIR 122
-
Luna J. M, et al. Hepatitis C virus RNA functionally sequesters miR 122. Cell. 160, 1099-1110 (2015).
-
(2015)
Cell
, vol.160
, pp. 1099-1110
-
-
Luna, J.M.1
-
58
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili M. N, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927 (2011).
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
-
59
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien T, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
-
60
-
-
80053523254
-
The evolution of RNAs with multiple functions
-
Dinger M. E, Gascoigne D. K, & Mattick J. S. The evolution of RNAs with multiple functions. Biochimie. 93, 2013-2018 (2011).
-
(2011)
Biochimie
, vol.93
, pp. 2013-2018
-
-
Dinger, M.E.1
Gascoigne, D.K.2
Mattick, J.S.3
-
61
-
-
84954315702
-
IGF1 3UTR functions as a ceRNA in promoting angiogenesis by sponging MIR-29 family in osteosarcoma
-
Gao S, et al. IGF1 3UTR functions as a ceRNA in promoting angiogenesis by sponging miR-29 family in osteosarcoma. J. Mol. Histol. 47, 135-143 (2016).
-
(2016)
J. Mol. Histol
, vol.47
, pp. 135-143
-
-
Gao, S.1
-
62
-
-
79955598536
-
Expression of CD44 3' untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis
-
Jeyapalan Z, et al. Expression of CD44 3' untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis. Nucleic Acids Res. 39, 3026-3041 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3026-3041
-
-
Jeyapalan, Z.1
-
63
-
-
84863083842
-
The non-coding 3' UTR of CD44 induces metastasis by regulating extracellular matrix functions
-
Rutnam Z. J, & Yang B. B. The non-coding 3' UTR of CD44 induces metastasis by regulating extracellular matrix functions. J. Cell Sci. 125, 2075-2085 (2012).
-
(2012)
J. Cell Sci
, vol.125
, pp. 2075-2085
-
-
Rutnam, Z.J.1
Yang, B.B.2
-
64
-
-
78149442860
-
Expression of versican 3' untranslated region modulates endogenous microRNA functions
-
Lee D. Y, et al. Expression of versican 3' untranslated region modulates endogenous microRNA functions. PLoS ONE. 5, e13599 (2010).
-
(2010)
PLoS ONE
, vol.5
, pp. e13599
-
-
Lee, D.Y.1
-
65
-
-
84906271393
-
FOXO1 3UTR functions as a ceRNA in repressing the metastases of breast cancer cells via regulating miRNA activity
-
Yang J, et al. FOXO1 3UTR functions as a ceRNA in repressing the metastases of breast cancer cells via regulating miRNA activity. FEBS Lett. 588, 3218-3224 (2014).
-
(2014)
FEBS Lett
, vol.588
, pp. 3218-3224
-
-
Yang, J.1
-
66
-
-
84927145743
-
OCT4B modulates OCT4A expression as ceRNA in tumor cells
-
Li D, et al. OCT4B modulates OCT4A expression as ceRNA in tumor cells. Oncol. Rep. 33, 2622-2630 (2015).
-
(2015)
Oncol. Rep
, vol.33
, pp. 2622-2630
-
-
Li, D.1
-
67
-
-
84939252155
-
AEG 1 3' untranslated region functions as a ceRNA in inducing epithelial-mesenchymal transition of human non-small cell lung cancer by regulating MIR 30a activity
-
Liu K, et al. AEG 1 3' untranslated region functions as a ceRNA in inducing epithelial-mesenchymal transition of human non-small cell lung cancer by regulating miR 30a activity. Eur. J. Cell Biol. 94, 22-31 (2015).
-
(2015)
Eur. J. Cell Biol
, vol.94
, pp. 22-31
-
-
Liu, K.1
-
68
-
-
80054700538
-
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
-
Tay Y, et al. Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell. 147, 344-357 (2011).
-
(2011)
Cell
, vol.147
, pp. 344-357
-
-
Tay, Y.1
-
69
-
-
80054681545
-
In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
-
Karreth F. A, et al. In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell. 147, 382-395 (2011).
-
(2011)
Cell
, vol.147
, pp. 382-395
-
-
Karreth, F.A.1
-
70
-
-
80054689794
-
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
Sumazin P, et al. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell. 147, 370-381 (2011).
-
(2011)
Cell
, vol.147
, pp. 370-381
-
-
Sumazin, P.1
-
71
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis B. P, Burge C. B, & Bartel D. P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 120, 15-20 (2005).
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
72
-
-
14044251458
-
Human microRNA targets
-
John B, et al. Human microRNA targets. PLoS Biol. 2, e363 (2004).
-
(2004)
PLoS Biol
, vol.2
, pp. e363
-
-
John, B.1
-
73
-
-
84865138690
-
MiRcode: A map of putative microRNA target sites in the long non-coding transcriptome
-
Jeggari A, & Marks D. S, & Larsson E. miRcode: a map of putative microRNA target sites in the long non-coding transcriptome. Bioinformatics. 28, 2062-2063 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 2062-2063
-
-
Jeggari, A.1
Marks, D.S.2
Larsson, E.3
-
74
-
-
84876523096
-
DIANA-LncBase: Experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
-
Paraskevopoulou M. D, et al. DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Res. 41, D239-D245 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D239-D245
-
-
Paraskevopoulou, M.D.1
-
75
-
-
84961288501
-
The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo
-
Karreth F. A, et al. The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo. Cell. 161, 319-332 (2015).
-
(2015)
Cell
, vol.161
, pp. 319-332
-
-
Karreth, F.A.1
-
76
-
-
37349042903
-
Experimental validation of miRNA targets
-
Kuhn D. E, et al. Experimental validation of miRNA targets. Methods. 44, 47-54 (2008).
-
(2008)
Methods
, vol.44
, pp. 47-54
-
-
Kuhn, D.E.1
-
77
-
-
80052451056
-
Experimental strategies for microRNA target identification
-
Thomson D. W, Bracken C. P, & Goodall G. J. Experimental strategies for microRNA target identification. Nucleic Acids Res. 39, 6845-6853 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6845-6853
-
-
Thomson, D.W.1
Bracken, C.P.2
Goodall, G.J.3
-
78
-
-
77951474125
-
Target mRNA abundance dilutes microRNA and siRNA activity
-
Arvey A, Larsson E, Sander C, Leslie C. S, & Marks D. S. Target mRNA abundance dilutes microRNA and siRNA activity. Mol. Syst. Biol. 6, 363 (2010).
-
(2010)
Mol. Syst. Biol
, vol.6
, pp. 363
-
-
Arvey, A.1
Larsson, E.2
Sander, C.3
Leslie, C.S.4
Marks, D.S.5
-
79
-
-
42449152837
-
Experimental validation of the importance of seed complement frequency to siRNA specificity
-
Anderson E. M, et al. Experimental validation of the importance of seed complement frequency to siRNA specificity. RNA. 14, 853-861 (2008).
-
(2008)
RNA
, vol.14
, pp. 853-861
-
-
Anderson, E.M.1
-
80
-
-
80455154984
-
Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy 6 and other microRNAs
-
Garcia D. M, et al. Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy 6 and other microRNAs. Nat. Struct. Mol. Biol. 18, 1139-1146 (2011).
-
(2011)
Nat. Struct. Mol. Biol
, vol.18
, pp. 1139-1146
-
-
Garcia, D.M.1
-
81
-
-
84908222388
-
Genome-wide identification of MIR 200 targets reveals a regulatory network controlling cell invasion
-
Bracken C. P, et al. Genome-wide identification of miR 200 targets reveals a regulatory network controlling cell invasion. EMBO J. 33, 2040-2056 (2014).
-
(2014)
EMBO J.
, vol.33
, pp. 2040-2056
-
-
Bracken, C.P.1
-
82
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi S. W, Zang J. B, Mele A, & Darnell R. B. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature. 460, 479-486 (2009).
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
83
-
-
84865726286
-
The gencode pseudogene resource
-
Pei B, et al. The GENCODE pseudogene resource. Genome Biol. 13, R51 (2012).
-
(2012)
Genome Biol
, vol.13
, pp. R51
-
-
Pei, B.1
-
84
-
-
84923591343
-
Pseudogene-derived lncRNAs: Emerging regulators of gene expression
-
Milligan M. J, & Lipovich L. Pseudogene-derived lncRNAs: emerging regulators of gene expression. Front. Genet. 5, 476 (2014).
-
(2014)
Front. Genet
, vol.5
, pp. 476
-
-
Milligan, M.J.1
Lipovich, L.2
-
85
-
-
84901599553
-
A draft map of the human proteome
-
Kim M. S, et al A draft map of the human proteome. Nature. 509, 575-581 (2014).
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.S.1
-
86
-
-
84876580450
-
Molecular biology A circuitous route noncoding RNA
-
Wilusz J. E, & Sharp P. A. Molecular biology A circuitous route noncoding RNA. Science. 340, 440-441 (2013).
-
(2013)
Science
, vol.340
, pp. 440-441
-
-
Wilusz, J.E.1
Sharp, P.A.2
-
87
-
-
84924599473
-
The RNA binding protein quaking regulates formation of circRNAs
-
Conn S. J, et al. The RNA binding protein quaking regulates formation of circRNAs. Cell. 160, 1125-1134 (2015).
-
(2015)
Cell
, vol.160
, pp. 1125-1134
-
-
Conn, S.J.1
-
88
-
-
0027158771
-
Circular transcripts of the testis-determining gene Sry in adult mouse testis
-
Capel B, et al. Circular transcripts of the testis-determining gene Sry in adult mouse testis. Cell. 73, 1019-1030 (1993).
-
(1993)
Cell
, vol.73
, pp. 1019-1030
-
-
Capel, B.1
-
89
-
-
84964240310
-
Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed
-
Rybak-Wolf A, et al. Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed. Mol. Cell (2015).
-
(2015)
Mol. Cell
-
-
Rybak-Wolf, A.1
-
90
-
-
84911491114
-
Circular RNAs diversity of form and function
-
Lasda E, & Parker R. Circular RNAs: diversity of form and function. RNA. 20, 1829-1842 (2014).
-
(2014)
RNA
, vol.20
, pp. 1829-1842
-
-
Lasda, E.1
Parker, R.2
-
91
-
-
84956906428
-
Expanded identification and characterization of mammalian circular RNAs
-
Guo J. U, Agarwal V, Guo H, & Bartel D. P. Expanded identification and characterization of mammalian circular RNAs. Genome Biol. 15, 409 (2014).
-
(2014)
Genome Biol
, vol.15
, pp. 409
-
-
Guo, J.U.1
Agarwal, V.2
Guo, H.3
Bartel, D.P.4
-
92
-
-
84900322651
-
Detecting and characterizing circular RNAs
-
Jeck W. R, & Sharpless N. E. Detecting and characterizing circular RNAs. Nat. Biotechnol. 32, 453-461 (2014).
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 453-461
-
-
Jeck, W.R.1
Sharpless, N.E.2
-
93
-
-
84872531655
-
Circular RNAs are abundant, conserved, and associated with ALU repeats
-
Jeck W. R, et al. Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA. 19, 141-157 (2013).
-
(2013)
RNA
, vol.19
, pp. 141-157
-
-
Jeck, W.R.1
-
94
-
-
84925583141
-
Circular RNA ITCH has inhibitory effect on ESCC by suppressing the Wnt/β-catenin pathway
-
Li F, et al. Circular RNA ITCH has inhibitory effect on ESCC by suppressing the Wnt/β-catenin pathway. Oncotarget. 6, 6001-6013 (2015).
-
(2015)
Oncotarget
, vol.6
, pp. 6001-6013
-
-
Li, F.1
-
95
-
-
84901423529
-
A view of pre-mRNA splicing from RNase R resistant RNAs
-
Suzuki H, & Tsukahara T A view of pre-mRNA splicing from RNase R resistant RNAs. Int. J. Mol. Sci. 15, 9331-9342 (2014).
-
(2014)
Int. J. Mol. Sci
, vol.15
, pp. 9331-9342
-
-
Suzuki, H.1
Tsukahara, T.2
-
96
-
-
80455143733
-
MiRNA-dependent gene silencing involving Ago2 mediated cleavage of a circular antisense RNA
-
Hansen T. B, et al. miRNA-dependent gene silencing involving Ago2 mediated cleavage of a circular antisense RNA. EMBO J. 30, 4414-4422 (2011).
-
(2011)
EMBO J.
, vol.30
, pp. 4414-4422
-
-
Hansen, T.B.1
-
97
-
-
84944678160
-
RNA-mediated degradation of microRNAs: A widespread viral strategy?
-
McCaskill J, Praihirunkit P, Sharp P. M, & Buck A. H. RNA-mediated degradation of microRNAs: a widespread viral strategy?. RNA Biol. 12, 579-585 (2015).
-
(2015)
RNA Biol
, vol.12
, pp. 579-585
-
-
McCaskill, J.1
Praihirunkit, P.2
Sharp, P.M.3
Buck, A.H.4
-
98
-
-
84925240058
-
Viral noncoding RNAs: More surprises
-
Tycowski K. T, et al. Viral noncoding RNAs: more surprises. Genes Dev. 29, 567-584 (2015).
-
(2015)
Genes Dev
, vol.29
, pp. 567-584
-
-
Tycowski, K.T.1
-
99
-
-
0022749231
-
Viral-encoded small RNAs in herpes virus saimiri induced tumors
-
Murthy S, Kamine J, & Desrosiers R. C. Viral-encoded small RNAs in herpes virus saimiri induced tumors. EMBO J. 5, 1625-1632 (1986).
-
(1986)
EMBO J.
, Issue.5
, pp. 1625-1632
-
-
Murthy, S.1
Kamine, J.2
Desrosiers, R.C.3
-
100
-
-
0023724428
-
Four novel U RNAs are encoded by a herpesvirus
-
Lee S. I, Murthy S. C, Trimble J. J, Desrosiers R. C, & Steitz J. A. Four novel U RNAs are encoded by a herpesvirus. Cell. 54, 599-607 (1988).
-
(1988)
Cell
, vol.54
, pp. 599-607
-
-
Lee, S.I.1
Murthy, S.C.2
Trimble, J.J.3
Desrosiers, R.C.4
Steitz, J.A.5
-
101
-
-
84898001469
-
Alternative capture of noncoding RNAs or protein-coding genes by herpesviruses to alter host T cell function
-
Guo Y. E, Riley K. J, Iwasaki A, & Steitz J. A. Alternative capture of noncoding RNAs or protein-coding genes by herpesviruses to alter host T cell function. Mol. Cell. 54, 67-79 (2014).
-
(2014)
Mol. Cell
, vol.54
, pp. 67-79
-
-
Guo, Y.E.1
Riley, K.J.2
Iwasaki, A.3
Steitz, J.A.4
-
102
-
-
46749124698
-
Position-dependent function for a tandem microRNA MIR 122 binding site located in the hepatitis C virus RNA genome
-
Jopling C. L, Schutz S, & Sarnow P. Position-dependent function for a tandem microRNA miR 122 binding site located in the hepatitis C virus RNA genome. Cell Host Microbe. 4, 77-85 (2008).
-
(2008)
Cell Host Microbe
, vol.4
, pp. 77-85
-
-
Jopling, C.L.1
Schutz, S.2
Sarnow, P.3
-
103
-
-
79952768199
-
Masking the 5' terminal nucleotides of the hepatitis C virus genome by an unconventional microRNA-Target RNA complex
-
Machlin E. S, Sarnow P, & Sagan S. M. Masking the 5' terminal nucleotides of the hepatitis C virus genome by an unconventional microRNA-Target RNA complex. Proc. Natl Acad. Sci. USA. 108, 3193-3198 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 3193-3198
-
-
Machlin, E.S.1
Sarnow, P.2
Sagan, S.M.3
-
104
-
-
58249088751
-
MicroRNAs target recognition and regulatory functions
-
Bartel D. P. MicroRNAs: target recognition and regulatory functions. Cell. 136, 215-233 (2009).
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
105
-
-
84933034424
-
PTEN ceRNA networks in human cancer
-
Poliseno L, & Pandolfi P. P. PTEN ceRNA networks in human cancer. Methods 77-78, 41-50 (2015).
-
(2015)
Methods 77-78
, pp. 41-50
-
-
Poliseno, L.1
Pandolfi, P.P.2
-
106
-
-
84886910303
-
Emerging roles of competing endogenous RNAs in cancer: Insights from the regulation of PTEN
-
de Giorgio A, Krell J, Harding V, Stebbing J, & Castellano L. Emerging roles of competing endogenous RNAs in cancer: insights from the regulation of PTEN. Mol. Cell. Biol. 33, 3976-3982 (2013).
-
(2013)
Mol. Cell. Biol
, vol.33
, pp. 3976-3982
-
-
De Giorgio, A.1
Krell, J.2
Harding, V.3
Stebbing, J.4
Castellano, L.5
-
107
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim L. P, et al. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature. 433, 769-773 (2005).
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
-
108
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, et al. The impact of microRNAs on protein output. Nature. 455, 64-71 (2008).
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
-
109
-
-
72949115517
-
Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
-
Hendrickson D. G, et al. Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. PLoS Biol. 7, e1000238 (2009).
-
(2009)
PLoS Biol
, vol.7
, pp. e1000238
-
-
Hendrickson, D.G.1
-
110
-
-
84941087952
-
DIANA-TarBase v7.0: Indexing more than half a million experimentally supported miRNA: mRNA interactions
-
Vlachos I. S, et al. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43, D153-D159 (2015).
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D153-D159
-
-
Vlachos, I.S.1
-
111
-
-
84892573723
-
The multilayered complexity of ceRNA crosstalk and competition
-
Tay Y, Rinn J, & Pandolfi P. P. The multilayered complexity of ceRNA crosstalk and competition. Nature. 505, 344-352 (2014).
-
(2014)
Nature
, vol.505
, pp. 344-352
-
-
Tay, Y.1
Rinn, J.2
Pandolfi, P.P.3
-
112
-
-
77955475953
-
Expanding the microRNA targeting code: Functional sites with centered pairing
-
Shin C, et al. Expanding the microRNA targeting code: functional sites with centered pairing. Mol. Cell. 38, 789-802 (2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 789-802
-
-
Shin, C.1
-
114
-
-
74049088856
-
Lost in translation: An assessment and perspective for computational microRNA target identification
-
Alexiou P, Maragkakis M, Papadopoulos G. L, Reczko M, & Hatzigeorgiou A. G. Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinformatics. 25, 3049-3055 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 3049-3055
-
-
Alexiou, P.1
Maragkakis, M.2
Papadopoulos, G.L.3
Reczko, M.4
Hatzigeorgiou, A.G.5
-
115
-
-
66249106716
-
Predicting microRNA targets and functions: Traps for the unwary
-
Ritchie W, Flamant S, & Rasko J. E. Predicting microRNA targets and functions: traps for the unwary. Nat. Methods. 6, 397-398 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 397-398
-
-
Ritchie, W.1
Flamant, S.2
Rasko, J.E.3
-
116
-
-
84882643385
-
Linc2GO: A human LincRNA function annotation resource based on ceRNA hypothesis
-
Liu K, Yan Z, Li Y, & Sun Z. Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis. Bioinformatics. 29, 2221-2222 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 2221-2222
-
-
Liu, K.1
Yan, Z.2
Li, Y.3
Sun, Z.4
-
117
-
-
84906279462
-
HumanViCe: Host ceRNA network in virus infected cells in human
-
Ghosal S, Das S, Sen R, & Chakrabarti J. HumanViCe: host ceRNA network in virus infected cells in human. Front. Genet. 5, 249 (2014).
-
(2014)
Front. Genet
, vol.5
, pp. 249
-
-
Ghosal, S.1
Das, S.2
Sen, R.3
Chakrabarti, J.4
-
118
-
-
34249849395
-
Discovery of microRNA-mRNA modules via population-based probabilistic learning
-
Joung J. G, Hwang K. B, Nam J. W, Kim S. J, & Zhang B. T. Discovery of microRNA-mRNA modules via population-based probabilistic learning. Bioinformatics. 23, 1141-1147 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 1141-1147
-
-
Joung, J.G.1
Hwang, K.B.2
Nam, J.W.3
Kim, S.J.4
Zhang, B.T.5
-
119
-
-
57649228450
-
Finding microRNA regulatory modules in human genome using rule induction
-
Tran D. H, Satou K, & Ho T. B. Finding microRNA regulatory modules in human genome using rule induction. BMC Bioinformatics. 9, S5 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. S5
-
-
Tran, D.H.1
Satou, K.2
Ho, T.B.3
-
120
-
-
84861909720
-
Identification of microRNA-regulated gene networks by expression analysis of target genes
-
Gennarino V. A, et al. Identification of microRNA-regulated gene networks by expression analysis of target genes. Genome Res. 22, 1163-1172 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 1163-1172
-
-
Gennarino, V.A.1
-
121
-
-
84906241067
-
Long noncoding RNA associated-competing endogenous RNAs in gastric cancer
-
Xia T, et al. Long noncoding RNA associated-competing endogenous RNAs in gastric cancer. Sci. Rep. 4, 6088 (2014).
-
(2014)
Sci. Rep
, vol.4
, pp. 6088
-
-
Xia, T.1
-
122
-
-
84941101305
-
Assessing the gene regulatory properties of Argonaute-bound small RNAs of diverse genomic origin
-
Thomson D. W, et al. Assessing the gene regulatory properties of Argonaute-bound small RNAs of diverse genomic origin. Nucleic Acids Res. 43, 470-481(2014).
-
(2014)
Nucleic Acids Res
, vol.43
, pp. 470-481
-
-
Thomson, D.W.1
-
123
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, et al. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell. 141, 129-141 (2010).
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
-
124
-
-
84870038812
-
Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties
-
Wee L. M, Flores-Jasso C. F, Salomon W. E, & Zamore P. D. Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties. Cell. 151, 1055-1067 (2012).
-
(2012)
Cell
, vol.151
, pp. 1055-1067
-
-
Wee, L.M.1
Flores-Jasso, C.F.2
Salomon, W.E.3
Zamore, P.D.4
-
125
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
Guttman M, & Rinn J. L. Modular regulatory principles of large non-coding RNAs. Nature. 482, 339-346 (2012).
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
126
-
-
84903792862
-
Anti-miRs competitively inhibit microRNAs in Argonaute complexes
-
Hogan D. J, et al. Anti-miRs competitively inhibit microRNAs in Argonaute complexes. PLoS ONE. 9, e100951 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e100951
-
-
Hogan, D.J.1
-
127
-
-
84953351897
-
The specificity of long noncoding RNA expression
-
Gloss B. S, & Dinger M. E. The specificity of long noncoding RNA expression. Biochim. Biophys. Acta 1859, 16-22 (2015).
-
(2015)
Biochim. Biophys. Acta
, vol.1859
, pp. 16-22
-
-
Gloss, B.S.1
Dinger, M.E.2
-
128
-
-
84929657536
-
Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells
-
Tan J. Y, et al. Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells. Genome Res. 25, 655-666 (2015).
-
(2015)
Genome Res
, vol.25
, pp. 655-666
-
-
Tan, J.Y.1
-
129
-
-
84860581983
-
Genome-wide analysis of long noncoding RNA stability
-
Clark M. B, et al. Genome-wide analysis of long noncoding RNA stability. Genome Res. 22, 885-898 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 885-898
-
-
Clark, M.B.1
-
130
-
-
84896397929
-
Global analyses of the effect of different cellular contexts on microRNA targeting
-
Nam J. W, et al. Global analyses of the effect of different cellular contexts on microRNA targeting. Mol. Cell. 53, 1031-1043 (2014).
-
(2014)
Mol. Cell
, vol.53
, pp. 1031-1043
-
-
Nam, J.W.1
-
131
-
-
80052191259
-
Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage
-
Bracken C. P, et al. Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage. Nucleic Acids Res. 39, 5658-5668 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5658-5668
-
-
Bracken, C.P.1
-
132
-
-
84936744064
-
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
-
Sugimoto Y, et al. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions. Genome Biol. 13, R67 (2012).
-
(2012)
Genome Biol
, vol.13
, pp. R67
-
-
Sugimoto, Y.1
-
133
-
-
84873560641
-
Quantifying Argonaute proteins in and out of GW/P bodies: Implications in microRNA activities
-
Leung A. K, & Sharp P. A. Quantifying Argonaute proteins in and out of GW/P bodies: implications in microRNA activities. Adv. Exp. Med. Biol. 768, 165-182 (2013).
-
(2013)
Adv. Exp. Med. Biol
, vol.768
, pp. 165-182
-
-
Leung, A.K.1
Sharp, P.A.2
-
134
-
-
84902462961
-
A dosage-dependent pleiotropic role of Dicer in prostate cancer growth and metastasis
-
Zhang B, et al A dosage-dependent pleiotropic role of Dicer in prostate cancer growth and metastasis. Oncogene. 33, 3099-3108 (2014).
-
(2014)
Oncogene
, vol.33
, pp. 3099-3108
-
-
Zhang, B.1
-
136
-
-
33749077734
-
Prediction of microRNA targets
-
Rehmsmeier M. Prediction of microRNA targets. Methods Mol. Biol. 342, 87-99 (2006).
-
(2006)
Methods Mol. Biol
, vol.342
, pp. 87-99
-
-
Rehmsmeier, M.1
-
137
-
-
84949745048
-
Computational prediction of microRNA targets
-
Lagana A. Computational prediction of microRNA targets. Adv. Exp. Med. Biol. 887, 231-252 (2015).
-
(2015)
Adv. Exp. Med. Biol
, vol.887
, pp. 231-252
-
-
Lagana, A.1
-
138
-
-
79952108909
-
Computational prediction of microRNA targets
-
Wang X. Computational prediction of microRNA targets. Methods Mol. Biol. 667, 283-295 (2010).
-
(2010)
Methods Mol. Biol
, vol.667
, pp. 283-295
-
-
Wang, X.1
-
139
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis B. P, Shih I. H, Jones-Rhoades M. W, Bartel D. P, & Burge C. B. Prediction of mammalian microRNA targets. Cell. 115, 787-798 (2003).
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
140
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, & Segal E. The role of site accessibility in microRNA target recognition. Nat. Genet. 39, 1278-1284 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
141
-
-
77955963884
-
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
-
Betel D, Koppal A, Agius P, Sander C, & Leslie C. Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biol. 11, R90 (2010).
-
(2010)
Genome Biol
, vol.11
, pp. R90
-
-
Betel, D.1
Koppal, A.2
Agius, P.3
Sander, C.4
Leslie, C.5
-
142
-
-
84868137211
-
A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2
-
Oulas A, et al. A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2. RNA Biol. 9, 1196-1207 (2012).
-
(2012)
RNA Biol
, vol.9
, pp. 1196-1207
-
-
Oulas, A.1
-
143
-
-
2442672918
-
A combined computational-experimental approach predicts human microRNA targets
-
Kiriakidou M, et al A combined computational-experimental approach predicts human microRNA targets. Genes Dev. 18, 1165-1178 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 1165-1178
-
-
Kiriakidou, M.1
-
144
-
-
84903200695
-
3'UTR shortening identifies high-risk cancers with targeted dysregulation of the ceRNA network
-
Li L, et al. 3'UTR shortening identifies high-risk cancers with targeted dysregulation of the ceRNA network. Sci. Rep. 4, 5406 (2014).
-
(2014)
Sci. Rep
, vol.4
, pp. 5406
-
-
Li, L.1
-
145
-
-
84937605789
-
RNA-binding protein HuR sequesters microRNA 21 to prevent translation repression of proinflammatory tumor suppressor gene programmed cell death 4
-
Poria D. K, Guha A, Nandi I, & Ray P. S. RNA-binding protein HuR sequesters microRNA 21 to prevent translation repression of proinflammatory tumor suppressor gene programmed cell death 4. Oncogene http://dx.doi.org/10.1038/onc.2015.235 (2015).
-
(2015)
Oncogene
, vol.2015
, pp. 235
-
-
Poria, D.K.1
Guha, A.2
Nandi, I.3
Ray, P.S.4
-
146
-
-
84951284507
-
Get in LINE: Competition for newly minted retrotransposon proteins at the ribosome
-
Floor S. N, & Doudna J. A. Get in LINE: Competition for newly minted retrotransposon proteins at the ribosome. Mol. Cell. 60, 712-714 (2015).
-
(2015)
Mol. Cell
, vol.60
, pp. 712-714
-
-
Floor, S.N.1
Doudna, J.A.2
|