-
1
-
-
77955167841
-
Signatures of RNA binding proteins globally coupled to effective microRNA target sites
-
Jacobsen A, Wen J, Marks DS, Krogh A, (2010) Signatures of RNA binding proteins globally coupled to effective microRNA target sites. Genome Research 20: 1010-1019.
-
(2010)
Genome Research
, vol.20
, pp. 1010-1019
-
-
Jacobsen, A.1
Wen, J.2
Marks, D.S.3
Krogh, A.4
-
2
-
-
79961170994
-
A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
-
Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi P, (2011) A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146: 353-358.
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.5
-
3
-
-
80054700538
-
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
-
Tay Y, Kats L, Salmena L, Weiss D, Tan S, et al. (2011) Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell 147: 344-357.
-
(2011)
Cell
, vol.147
, pp. 344-357
-
-
Tay, Y.1
Kats, L.2
Salmena, L.3
Weiss, D.4
Tan, S.5
-
4
-
-
84870038812
-
Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties
-
F F.J.C.,D Z.P
-
Wee LM, F FJC, Salomon WE, D ZP, (2012) Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties. Cell 151: 1055-1067.
-
(2012)
Cell
, vol.151
, pp. 1055-1067
-
-
Wee, L.M.1
Salomon, W.E.2
-
5
-
-
61849137222
-
Many roads to maturity: microrna biogenesis pathways and their regulation
-
Winter J, Jung S, Keller S, Gregory R, Diederichs S, (2009) Many roads to maturity: microrna biogenesis pathways and their regulation. Nature cell biology 11: 228-34.
-
(2009)
Nature Cell Biology
, vol.11
, pp. 228-234
-
-
Winter, J.1
Jung, S.2
Keller, S.3
Gregory, R.4
Diederichs, S.5
-
6
-
-
77955902024
-
The widespread regulation of microrna biogenesis, function and decay
-
Krol J, Loedige I, Filipowicz W, (2010) The widespread regulation of microrna biogenesis, function and decay. Nature Reviews Genetics 11: 597-610.
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
7
-
-
67349123973
-
Redefining microRNA targets
-
Seitz H, (2009) Redefining microRNA targets. Current Biology 19: 870-873.
-
(2009)
Current Biology
, vol.19
, pp. 870-873
-
-
Seitz, H.1
-
8
-
-
80054681545
-
In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
-
Karreth F, Tay Y, Perna D, Ala U, Tan S, et al. (2011) In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell 147: 382-395.
-
(2011)
Cell
, vol.147
, pp. 382-395
-
-
Karreth, F.1
Tay, Y.2
Perna, D.3
Ala, U.4
Tan, S.5
-
9
-
-
79955598536
-
Expression of CD44 3′-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis
-
Jeyapalan Z, Deng Z, Shatseva T, Fang L, He C, et al. (2011) Expression of CD44 3′-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis. Nucleic Acids Research 39: 3026-3041.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. 3026-3041
-
-
Jeyapalan, Z.1
Deng, Z.2
Shatseva, T.3
Fang, L.4
He, C.5
-
10
-
-
80054689794
-
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
Sumazin P, Yang X, Chiu H, Chung W, Iyer A, et al. (2011) An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell 147: 370-381.
-
(2011)
Cell
, vol.147
, pp. 370-381
-
-
Sumazin, P.1
Yang, X.2
Chiu, H.3
Chung, W.4
Iyer, A.5
-
11
-
-
34548668642
-
Quantitative Characteristics of Gene Regulation by Small RNA
-
Levine E, Zhang Z, Kuhlman T, Hwa T, (2007) Quantitative Characteristics of Gene Regulation by Small RNA. PLoS Biol 5(9): e229.
-
(2007)
PLoS Biol
, vol.5
, Issue.9
-
-
Levine, E.1
Zhang, Z.2
Kuhlman, T.3
Hwa, T.4
-
12
-
-
35248861103
-
Efficient degradation and expression prioritization with small RNAs
-
Mitarai N, Andersson AMC, Krishna S, Semsey S, Sneppen K, (2007) Efficient degradation and expression prioritization with small RNAs. Physical Biology 4: 164.
-
(2007)
Physical Biology
, vol.4
, pp. 164
-
-
Mitarai, N.1
Andersson, A.M.C.2
Krishna, S.3
Semsey, S.4
Sneppen, K.5
-
13
-
-
12244269687
-
Near-critical phenomena in intracellular metabolite pools
-
Elf J, Paulsson J, Berg O, Ehrenberg M, (2003) Near-critical phenomena in intracellular metabolite pools. Biophysical Journal 84: 154-170.
-
(2003)
Biophysical Journal
, vol.84
, pp. 154-170
-
-
Elf, J.1
Paulsson, J.2
Berg, O.3
Ehrenberg, M.4
-
14
-
-
56949098506
-
Molecular titration and ultrasensitivity in regulatory networks
-
Buchler N, Louis M, (2008) Molecular titration and ultrasensitivity in regulatory networks. Journal of Molecular Biology 384: 1106-1119.
-
(2008)
Journal of Molecular Biology
, vol.384
, pp. 1106-1119
-
-
Buchler, N.1
Louis, M.2
-
15
-
-
56949096652
-
Small RNAs establish gene expression thresholds
-
Levine E, Hwa T, (2008) Small RNAs establish gene expression thresholds. Current Opinion in Microbiology 11: 574-579.
-
(2008)
Current Opinion in Microbiology
, vol.11
, pp. 574-579
-
-
Levine, E.1
Hwa, T.2
-
16
-
-
34748871477
-
Regulation of gene expression by small non-coding RNAs: a quantitative view
-
Shimoni Y, Friedlander G, Hetzroni G, Niv G, Altuvia S, et al. (2007) Regulation of gene expression by small non-coding RNAs: a quantitative view. Mol Syst Biol 3: 138.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 138
-
-
Shimoni, Y.1
Friedlander, G.2
Hetzroni, G.3
Niv, G.4
Altuvia, S.5
-
17
-
-
80052266532
-
MicroRNAs can generate thresholds in target gene expression
-
Mukherji S, Ebert M, Zheng G, Tsang J, Sharp P, et al. (2011) MicroRNAs can generate thresholds in target gene expression. Nature Genetics 43: 854-859.
-
(2011)
Nature Genetics
, vol.43
, pp. 854-859
-
-
Mukherji, S.1
Ebert, M.2
Zheng, G.3
Tsang, J.4
Sharp, P.5
-
18
-
-
84876899530
-
Integrated transcriptional and competitive endogenous rna networks are cross-regulated in permissive molecular environments
-
doi:, doi10.1073/pnas.1222509110
-
Ala U, Karreth FA, Bosia C, Pagnani A, Taulli R, et al. (2013) Integrated transcriptional and competitive endogenous rna networks are cross-regulated in permissive molecular environments. Proceedings of the National Academy of Sciences: doi:10.1073/pnas.1222509110.
-
(2013)
Proceedings of the National Academy of Sciences
-
-
Ala, U.1
Karreth, F.A.2
Bosia, C.3
Pagnani, A.4
Taulli, R.5
-
19
-
-
19544379881
-
Stochasticity in gene expression: from theories to phenotypes
-
Kaern M, Elston T, Blake W, Collins J, (2005) Stochasticity in gene expression: from theories to phenotypes. Nat Rev Genet 6(6): 451-464.
-
(2005)
Nat Rev Genet
, vol.6
, Issue.6
, pp. 451-464
-
-
Kaern, M.1
Elston, T.2
Blake, W.3
Collins, J.4
-
20
-
-
34347260600
-
Living with noisy genes: how cells function reliably with inherent variability in gene expression
-
Maheshri N, OShea E, (2007) Living with noisy genes: how cells function reliably with inherent variability in gene expression. Annu Rev Biophys Biomol Struct 36: 413-434.
-
(2007)
Annu Rev Biophys Biomol Struct
, vol.36
, pp. 413-434
-
-
Maheshri, N.1
OShea, E.2
-
21
-
-
53549123008
-
Nature, nurture, or chance: stochastic gene expression and its consequences
-
Raj A, van Oudenaarden A, (2008) Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135: 216-226.
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
van Oudenaarden, A.2
-
22
-
-
64249144494
-
A microRNA imparts robustness against environmental uctuation during development
-
Li X, Cassidy J, Reinke C, Fischboeck S, Carthew R, (2009) A microRNA imparts robustness against environmental uctuation during development. Cell 137(2): 273-282.
-
(2009)
Cell
, vol.137
, Issue.2
, pp. 273-282
-
-
Li, X.1
Cassidy, J.2
Reinke, C.3
Fischboeck, S.4
Carthew, R.5
-
24
-
-
84860324470
-
Roles for MicroRNAs in Conferring Robustness to Biological Processes
-
Ebert M, Sharp P, (2012) Roles for MicroRNAs in Conferring Robustness to Biological Processes. Cell 149(3): 515-524.
-
(2012)
Cell
, vol.149
, Issue.3
, pp. 515-524
-
-
Ebert, M.1
Sharp, P.2
-
25
-
-
0037144546
-
A microRNA in a Multiple-Turnover RNAi Enzyme Complex
-
Hutvágner G, Zamore PD, (2002) A microRNA in a Multiple-Turnover RNAi Enzyme Complex. Science 297(5589): 2056-2060.
-
(2002)
Science
, vol.297
, Issue.5589
, pp. 2056-2060
-
-
Hutvágner, G.1
Zamore, P.D.2
-
27
-
-
28544431919
-
A role for the P-body component GW182 in microRNA function
-
Liu J, Rivas F, Wohlschlegel J, Yates J, Parker R, et al. (2005) A role for the P-body component GW182 in microRNA function. Nature cell biology 7(12): 1261-1266.
-
(2005)
Nature Cell Biology
, vol.7
, Issue.12
, pp. 1261-1266
-
-
Liu, J.1
Rivas, F.2
Wohlschlegel, J.3
Yates, J.4
Parker, R.5
-
28
-
-
24644480213
-
Inhibition of translational initiation by Let-7 MicroRNA in human cells
-
Pillai R, Bhattacharyya S, Artus C, Zoller T, Cougot N, et al. (2005) Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science 309 (5740): 1573-1576.
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1573-1576
-
-
Pillai, R.1
Bhattacharyya, S.2
Artus, C.3
Zoller, T.4
Cougot, N.5
-
29
-
-
77449131843
-
MicroRNA assassins: factors that regulate the disappearance of miR-NAs
-
Kai Z, Pasquinelli A, (2010) MicroRNA assassins: factors that regulate the disappearance of miR-NAs. Nature structural & molecular biology 17(1): 5-10.
-
(2010)
Nature Structural & Molecular Biology
, vol.17
, Issue.1
, pp. 5-10
-
-
Kai, Z.1
Pasquinelli, A.2
-
30
-
-
79952364512
-
Kinetic Analysis Reveals the Fate of a MicroRNA following Target Regulation in Mammalian Cells
-
Baccarini A, Chauhan H, Gardner TJ, Jayaprakash AD, Sachidanandam R, et al. (2011) Kinetic Analysis Reveals the Fate of a MicroRNA following Target Regulation in Mammalian Cells. Current Biology 21(5): 369-376.
-
(2011)
Current Biology
, vol.21
, Issue.5
, pp. 369-376
-
-
Baccarini, A.1
Chauhan, H.2
Gardner, T.J.3
Jayaprakash, A.D.4
Sachidanandam, R.5
-
33
-
-
84879478683
-
-
Preprint
-
Levine E, Huang M, Huang Y, Kuhlman T, Shi H, et al. (2008) On noise and silence in small RNA regulation. URL matisse.ucsd.edu/~hwa/pub/sRNA-noise.pdf. Preprint.
-
(2008)
On noise and silence in small RNA regulation
-
-
Levine, E.1
Huang, M.2
Huang, Y.3
Kuhlman, T.4
Shi, H.5
-
34
-
-
79151474604
-
Theoretical Analysis of Catalytic-sRNA-Mediated Gene Silencing
-
Hao Y, Xu Y, Shi H, (2011) Theoretical Analysis of Catalytic-sRNA-Mediated Gene Silencing. Journal of Molecular Biology 406(1): 195-204.
-
(2011)
Journal of Molecular Biology
, vol.406
, Issue.1
, pp. 195-204
-
-
Hao, Y.1
Xu, Y.2
Shi, H.3
-
35
-
-
84867216415
-
Autoregulation via intronic microRNAs and its functions
-
Bosia C, Osella M, El Baroudi M, Corá D, Caselle M, (2012) Autoregulation via intronic microRNAs and its functions. BMC Systems Biology 6: 131.
-
(2012)
BMC Systems Biology
, vol.6
, pp. 131
-
-
Bosia, C.1
Osella, M.2
El Baroudi, M.3
Corá, D.4
Caselle, M.5
-
36
-
-
79953660228
-
Network motifs: simple building blocks of complex networks
-
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, et al. (2002) Network motifs: simple building blocks of complex networks. Science 303: 1538-1542.
-
(2002)
Science
, vol.303
, pp. 1538-1542
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
-
37
-
-
70349334678
-
Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human
-
Re A, Corá D, Taverna D, Caselle M, (2009) Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human. Mol BioSyst 5: 854-867.
-
(2009)
Mol BioSyst
, vol.5
, pp. 854-867
-
-
Re, A.1
Corá, D.2
Taverna, D.3
Caselle, M.4
-
38
-
-
34547555796
-
Global and local architecture of the mammalian microRNA-transcription factor regulatory network
-
Shalgi R, Lieber D, Oren M, Pilpel Y, (2007) Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput Biol 3(7): e131.
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.7
-
-
Shalgi, R.1
Lieber, D.2
Oren, M.3
Pilpel, Y.4
-
39
-
-
34249819336
-
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
-
Tsang J, Zhu J, van Oudenaarden A, (2007) MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol Cell 26: 753-767.
-
(2007)
Mol Cell
, vol.26
, pp. 753-767
-
-
Tsang, J.1
Zhu, J.2
van Oudenaarden, A.3
-
40
-
-
56649099271
-
Analysis of regulatory network topology reveals functionally distinct classes of micrornas
-
Yu X, Iin J, Zack D, Mendell J, Qian J, (2008) Analysis of regulatory network topology reveals functionally distinct classes of micrornas. Nucleic Acids Res 36: 6494-6503.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6494-6503
-
-
Yu, X.1
Iin, J.2
Zack, D.3
Mendell, J.4
Qian, J.5
-
41
-
-
77957200347
-
A potential role for intragenic miRNAs on their hosts interactome
-
Hinske L, Galante P, Kuo W, Ohno-Machado L, (2010) A potential role for intragenic miRNAs on their hosts interactome. BMC Genomics 11: 533.
-
(2010)
BMC Genomics
, vol.11
, pp. 533
-
-
Hinske, L.1
Galante, P.2
Kuo, W.3
Ohno-Machado, L.4
-
42
-
-
77949267161
-
Isoform specific gene auto-regulation via miRNAs: a case study on miR-128b and ARPP-21
-
Megraw M, Sethupathy P, Gumireddy K, Jensen S, Huang Q, et al. (2009) Isoform specific gene auto-regulation via miRNAs: a case study on miR-128b and ARPP-21. Theor Chem Acc 125: 593-598.
-
(2009)
Theor Chem Acc
, vol.125
, pp. 593-598
-
-
Megraw, M.1
Sethupathy, P.2
Gumireddy, K.3
Jensen, S.4
Huang, Q.5
-
43
-
-
79952302623
-
The Role of Incoherent MicroRNA-Mediated Feed- forward Loops in Noise Buffering
-
Osella M, Bosia C, Corá D, Caselle M, (2011) The Role of Incoherent MicroRNA-Mediated Feed- forward Loops in Noise Buffering. PLoS Comput Biol 7: e1001101.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Osella, M.1
Bosia, C.2
Corá, D.3
Caselle, M.4
-
45
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie DT, (1976) A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics 22: 403-434.
-
(1976)
Journal of Computational Physics
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
46
-
-
84874833554
-
Micrornas as a selective channel of communication between competing rnas: a steady-state theory
-
Figliuzzi M, Marinari E, Martino AD, (2013) Micrornas as a selective channel of communication between competing rnas: a steady-state theory. Biophysical Journal 104 (5): 1203-1213.
-
(2013)
Biophysical Journal
, vol.104
, Issue.5
, pp. 1203-1213
-
-
Figliuzzi, M.1
Marinari, E.2
Martino, A.D.3
|